Wall clock time and date at job start Fri Apr 10 2020 14:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48504 * 109.47451 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.47153 * 120.00342 * 3 2 1 6 6 H 1.48494 * 109.47523 * 240.00211 * 3 2 1 7 7 C 1.37868 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00462 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00145 * 359.97438 * 7 2 1 10 10 O 1.42897 * 112.94251 * 50.32665 * 9 7 2 11 11 C 1.53951 * 113.74010 * 278.74317 * 9 7 2 12 12 N 1.47813 * 86.03534 * 222.08254 * 11 9 7 13 13 C 1.34773 * 134.45406 * 204.64507 * 12 11 9 14 14 O 1.21588 * 120.00225 * 174.53541 * 13 12 11 15 15 C 1.47548 * 120.00075 * 354.54092 * 13 12 11 16 16 C 1.39797 * 120.16516 * 335.27069 * 15 13 12 17 17 C 1.37751 * 120.00186 * 179.73880 * 16 15 13 18 18 C 1.38540 * 120.34217 * 0.52136 * 17 16 15 19 19 C 1.38427 * 120.33593 * 359.76235 * 18 17 16 20 20 O 1.36004 * 120.00441 * 180.02562 * 19 18 17 21 21 C 1.39174 * 119.99064 * 359.97328 * 19 18 17 22 22 O 1.35741 * 120.16956 * 179.97438 * 21 19 18 23 23 C 1.47578 * 91.05199 * 24.54823 * 12 11 9 24 24 H 0.97003 * 120.00165 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00369 * 309.67556 * 10 9 7 26 26 H 1.09005 * 113.76607 * 336.34771 * 11 9 7 27 27 H 1.08999 * 113.76977 * 107.74263 * 11 9 7 28 28 H 1.08003 * 119.99939 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.82861 * 180.23260 * 17 16 15 30 30 H 1.08001 * 119.83322 * 179.73607 * 18 17 16 31 31 H 0.96703 * 113.99584 * 269.96946 * 20 19 18 32 32 H 0.96702 * 114.00181 * 270.02202 * 22 21 19 33 33 H 1.09002 * 113.77196 * 221.15496 * 23 12 11 34 34 H 1.09000 * 113.87047 * 89.76775 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1027 1.6966 -1.2124 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.2447 -2.5613 -1.0130 11 6 0.7563 -2.9291 1.3924 12 7 1.1922 -4.2899 1.0142 13 6 0.8430 -5.5337 1.3982 14 8 1.3150 -6.5001 0.8310 15 6 -0.1121 -5.7228 2.5068 16 6 -0.2652 -4.7301 3.4791 17 6 -1.1618 -4.9077 4.5097 18 6 -1.9077 -6.0720 4.5955 19 6 -1.7631 -7.0667 3.6436 20 8 -2.4992 -8.2068 3.7341 21 6 -0.8653 -6.8994 2.5935 22 8 -0.7203 -7.8727 1.6584 23 6 2.1610 -3.7400 0.0462 24 1 -0.4850 0.8401 0.0004 25 1 -0.3474 -1.7969 -1.0266 26 1 1.3276 -2.4973 2.2142 27 1 -0.3213 -2.8326 1.5250 28 1 0.3168 -3.8222 3.4202 29 1 -1.2806 -4.1374 5.2573 30 1 -2.6052 -6.2045 5.4093 31 1 -2.0750 -8.9091 4.2459 32 1 -0.0411 -8.5266 1.8734 33 1 2.2028 -4.2898 -0.8941 34 1 3.1465 -3.5465 0.4699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321511119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:33 Heat of formation + Delta-G solvation = -125.777073 kcal Electronic energy + Delta-G solvation = -21754.483032 eV Core-core repulsion = 18232.432920 eV Total energy + Delta-G solvation = -3522.050112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.76423 -40.67914 -38.99629 -37.80830 -37.49279 -35.82711 -34.15827 -32.18353 -30.34830 -29.98486 -27.25582 -27.09924 -24.66757 -23.47962 -21.93125 -20.63756 -19.57837 -19.23502 -18.92359 -17.71184 -17.69086 -17.11961 -16.87640 -16.50327 -16.14210 -15.93660 -15.60568 -15.31720 -14.96671 -14.42496 -14.09253 -13.84860 -13.54011 -13.43458 -13.30645 -13.02814 -12.85653 -12.74804 -12.32282 -12.25403 -12.21292 -11.69240 -11.27860 -10.91580 -10.63769 -10.26336 -10.03753 -9.66956 -9.56288 -8.25513 -6.43411 -0.30459 0.08072 1.49526 1.51967 1.58976 1.70703 1.86247 2.41739 2.57296 2.96075 3.00813 3.14410 3.40940 3.71866 3.94713 4.08450 4.12692 4.28079 4.40391 4.53291 4.58474 4.71823 4.74571 4.86898 4.94518 5.11193 5.15897 5.22241 5.28160 5.63658 5.72653 5.92391 6.54200 6.62490 6.75091 6.87429 7.06007 7.30178 7.42846 8.80569 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.004708 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.851875 B = 5946.350925 C = 6488.474061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.035 3.965 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.217 3.783 10 O -0.590 6.590 11 C 0.095 3.905 12 N -0.630 5.630 13 C 0.565 3.435 14 O -0.585 6.585 15 C -0.165 4.165 16 C -0.086 4.086 17 C -0.109 4.109 18 C -0.096 4.096 19 C 0.070 3.930 20 O -0.494 6.494 21 C 0.114 3.886 22 O -0.494 6.494 23 C 0.112 3.888 24 H 0.276 0.724 25 H 0.387 0.613 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.173 0.827 30 H 0.173 0.827 31 H 0.409 0.591 32 H 0.404 0.596 33 H 0.056 0.944 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -7.535 13.788 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.166 4.166 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.189 1.189 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.093 0.907 9 C 0.176 3.824 10 O -0.401 6.401 11 C -0.027 4.027 12 N -0.363 5.363 13 C 0.357 3.643 14 O -0.468 6.468 15 C -0.169 4.169 16 C -0.104 4.104 17 C -0.127 4.127 18 C -0.114 4.114 19 C 0.024 3.976 20 O -0.306 6.306 21 C 0.067 3.933 22 O -0.306 6.306 23 C -0.010 4.010 24 H 0.086 0.914 25 H 0.242 0.758 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.190 0.810 30 H 0.191 0.809 31 H 0.268 0.732 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.637 -8.082 12.783 15.352 hybrid contribution 0.834 0.639 0.029 1.051 sum -1.803 -7.443 12.812 14.926 Atomic orbital electron populations 1.69468 1.07186 1.29031 1.49975 1.25739 0.95711 1.02563 0.92559 0.85436 0.78253 0.77960 0.78948 1.20893 1.18915 1.20223 1.21678 0.94202 0.90535 1.53068 0.90722 1.20171 0.85834 0.91918 0.84462 1.86066 1.47611 1.49764 1.56699 1.24227 0.99883 0.76955 1.01655 1.50131 1.39947 1.04924 1.41297 1.18256 0.81587 0.81440 0.83029 1.90655 1.58332 1.39997 1.57788 1.20314 1.00668 0.97952 0.97956 1.21690 0.98245 0.97286 0.93198 1.21409 0.94632 0.98347 0.98290 1.21878 0.98798 0.92523 0.98187 1.18684 0.94402 0.90612 0.93852 1.84886 1.44746 1.23689 1.77307 1.19106 0.95013 0.89176 0.90040 1.84734 1.61446 1.39570 1.44859 1.23507 0.94159 0.91870 0.91442 0.91429 0.75848 0.87947 0.91709 0.84404 0.80971 0.80948 0.73171 0.73685 0.92549 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.58 11.20 21.44 0.24 -45.34 16 2 C 0.04 1.69 5.39 84.65 0.46 2.15 16 3 Si 0.97 38.40 29.54 68.60 2.03 40.43 16 4 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.56 -27.26 8.61 25.60 0.22 -27.04 16 8 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.22 10.46 1.40 -10.88 -0.02 10.44 16 10 O -0.59 -31.58 13.48 -148.98 -2.01 -33.59 16 11 C 0.09 3.99 5.68 86.44 0.49 4.48 16 12 N -0.63 -27.44 3.58 -843.37 -3.02 -30.46 16 13 C 0.57 24.62 7.76 86.70 0.67 25.30 16 14 O -0.58 -28.28 16.28 15.40 0.25 -28.03 16 15 C -0.17 -5.85 5.83 -20.02 -0.12 -5.97 16 16 C -0.09 -2.42 8.82 22.53 0.20 -2.22 16 17 C -0.11 -2.20 10.02 22.23 0.22 -1.98 16 18 C -0.10 -1.81 9.97 22.39 0.22 -1.59 16 19 C 0.07 1.72 6.71 22.54 0.15 1.87 16 20 O -0.49 -10.24 13.29 -79.70 -1.06 -11.30 16 21 C 0.11 3.66 6.71 22.92 0.15 3.82 16 22 O -0.49 -16.80 11.65 -64.06 -0.75 -17.55 16 23 C 0.11 4.98 8.23 86.49 0.71 5.69 16 24 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 25 H 0.39 20.80 6.60 -74.06 -0.49 20.31 16 26 H 0.10 3.87 7.70 -2.38 -0.02 3.85 16 27 H 0.06 2.79 7.86 -2.39 -0.02 2.78 16 28 H 0.14 3.88 5.54 -2.91 -0.02 3.87 16 29 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.41 3.84 9.06 -74.05 -0.67 3.17 16 32 H 0.40 10.32 9.05 -74.06 -0.67 9.65 16 33 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.11 4.30 8.09 -2.39 -0.02 4.28 16 Total: -1.00 -68.94 299.76 -1.59 -70.53 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.64 Total: 40.36 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 3.37 Total: 14.95 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.78 Total: -75.80 kcal Atomic # 8 Polarization: -86.90 SS G_CDS: -3.56 Total: -90.46 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -68.94 -1.59 -70.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321511119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.250 kcal (2) G-P(sol) polarization free energy of solvation -68.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds