Wall clock time and date at job start Fri Apr 10 2020 13:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86806 * 119.99697 * 2 1 4 4 H 1.48496 * 109.47221 * 240.00416 * 3 2 1 5 5 H 1.48500 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46906 * 119.99916 * 3 2 1 7 7 C 1.38624 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99813 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.35783 * 117.00019 * 174.96258 * 9 7 2 11 11 C 1.38905 * 119.99907 * 5.34004 * 10 9 7 12 12 C 1.38014 * 119.99685 * 180.02562 * 11 10 9 13 13 C 1.38909 * 119.99933 * 359.97438 * 12 11 10 14 14 N 1.40028 * 119.99920 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99922 * 144.91617 * 14 13 12 16 16 O 1.21520 * 120.00214 * 4.24855 * 15 14 13 17 17 O 1.34652 * 120.00240 * 184.24624 * 15 14 13 18 18 C 1.45200 * 117.00181 * 180.02562 * 17 15 14 19 19 C 1.54040 * 113.81563 * 248.50567 * 18 17 15 20 20 O 1.44446 * 85.42663 * 223.23594 * 19 18 17 21 21 C 1.44180 * 93.37773 * 24.08766 * 20 19 18 22 22 C 1.38907 * 119.99942 * 0.27509 * 13 12 11 23 23 C 1.38015 * 119.99813 * 359.44525 * 22 13 12 24 24 H 0.97002 * 120.00707 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00042 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.99888 * 179.97438 * 12 11 10 27 27 H 0.96998 * 120.00019 * 324.64436 * 14 13 12 28 28 H 1.08997 * 112.99771 * 20.33142 * 18 17 15 29 29 H 1.08999 * 113.86374 * 337.34532 * 19 18 17 30 30 H 1.08996 * 113.86232 * 109.04715 * 19 18 17 31 31 H 1.08996 * 113.86395 * 221.76620 * 21 20 19 32 32 H 1.09002 * 113.98173 * 90.07339 * 21 20 19 33 33 H 1.08000 * 120.00290 * 179.70463 * 22 13 12 34 34 H 1.08006 * 119.99915 * 180.25372 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0706 -3.5045 -0.1052 11 6 3.4579 -3.4371 -0.0952 12 6 4.2056 -4.5922 -0.2032 13 6 3.5707 -5.8220 -0.3212 14 7 4.3293 -6.9940 -0.4302 15 6 3.8898 -8.1361 0.1344 16 8 2.8001 -8.1684 0.6712 17 8 4.6581 -9.2415 0.1036 18 6 4.1206 -10.4356 0.7310 19 6 4.8680 -10.8561 2.0106 20 8 4.7724 -12.1987 1.4865 21 6 4.6476 -11.7488 0.1224 22 6 2.1833 -5.8888 -0.3364 23 6 1.4357 -4.7343 -0.2226 24 1 -0.4851 0.8400 0.0004 25 1 3.9515 -2.4809 -0.0038 26 1 5.2843 -4.5398 -0.1958 27 1 5.1691 -6.9847 -0.9154 28 1 3.0369 -10.4064 0.8437 29 1 5.8884 -10.4774 2.0699 30 1 4.2986 -10.6971 2.9262 31 1 3.9037 -12.2964 -0.4562 32 1 5.5994 -11.6429 -0.3980 33 1 1.6897 -6.8445 -0.4330 34 1 0.3569 -4.7866 -0.2303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334747348.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:51 Heat of formation + Delta-G solvation = -77.550228 kcal Electronic energy + Delta-G solvation = -20559.937200 eV Core-core repulsion = 17039.978361 eV Total energy + Delta-G solvation = -3519.958839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18293 -40.12394 -38.92200 -37.20675 -35.86497 -34.16805 -32.23876 -30.29579 -29.53363 -27.85643 -27.03572 -25.42535 -22.96742 -22.23549 -21.02678 -20.70647 -19.13039 -18.07368 -17.49344 -17.07627 -16.82906 -16.52286 -16.20728 -15.61843 -14.85519 -14.61254 -14.38002 -13.76564 -13.60693 -13.27783 -12.89653 -12.84854 -12.62570 -12.46192 -12.04692 -11.89687 -11.62827 -11.59435 -11.07352 -10.87315 -10.74357 -10.55097 -10.32714 -10.16206 -9.73462 -9.36305 -8.77985 -8.28190 -7.03841 -6.48742 -4.07233 1.90909 2.11090 2.19800 2.86198 3.10906 3.12327 3.14382 3.14887 3.79471 3.93227 4.11781 4.49896 4.55107 4.73389 4.88333 5.05446 5.07868 5.22522 5.27688 5.44818 5.49470 5.56373 5.69856 5.98112 6.12259 6.16919 6.24036 6.73670 6.76601 6.88178 7.08393 7.15829 7.34037 7.55249 7.69602 7.95173 8.34853 8.96172 9.65279 10.68869 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.056879 B = 0.002883 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.150597 B = 9709.058747 C = 9933.960850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.150 3.850 11 C -0.220 4.220 12 C -0.083 4.083 13 C 0.039 3.961 14 N -0.634 5.634 15 C 0.639 3.361 16 O -0.557 6.557 17 O -0.362 6.362 18 C 0.037 3.963 19 C 0.028 3.972 20 O -0.370 6.370 21 C 0.044 3.956 22 C -0.065 4.065 23 C -0.178 4.178 24 H 0.271 0.729 25 H 0.134 0.866 26 H 0.113 0.887 27 H 0.409 0.591 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -16.303 -1.028 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.095 3.905 11 C -0.240 4.240 12 C -0.103 4.103 13 C -0.052 4.052 14 N -0.285 5.285 15 C 0.392 3.608 16 O -0.445 6.445 17 O -0.276 6.276 18 C -0.019 4.019 19 C -0.049 4.049 20 O -0.289 6.289 21 C -0.033 4.033 22 C -0.085 4.085 23 C -0.198 4.198 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.131 0.869 27 H 0.244 0.756 28 H 0.144 0.856 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.148 0.852 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.007 -16.446 -0.578 19.259 hybrid contribution 0.890 0.976 -0.226 1.340 sum 10.896 -15.469 -0.804 18.939 Atomic orbital electron populations 1.70033 1.05986 1.27906 1.45579 1.25300 0.95849 0.98884 0.96448 0.85772 0.78709 0.79713 0.79192 1.19468 1.20257 1.19467 1.21284 0.91795 0.80816 1.53063 0.89022 1.83993 1.34267 1.11413 1.77980 1.19433 0.90245 0.88134 0.92639 1.20970 0.93648 0.98395 1.10979 1.20450 0.98613 0.90783 1.00453 1.17027 0.90382 0.83235 1.14530 1.41752 1.25820 1.05888 1.55044 1.18200 0.82838 0.81238 0.78485 1.91000 1.20963 1.83901 1.48625 1.86378 1.47610 1.19249 1.74404 1.26574 1.01941 0.80791 0.92619 1.24627 1.01465 0.80930 0.97891 1.89805 1.94961 1.25004 1.19140 1.24360 1.02034 0.90394 0.86498 1.20752 0.91722 0.98066 0.97947 1.20140 0.99814 0.89706 1.10178 0.91870 0.84884 0.86880 0.75583 0.85587 0.88810 0.87855 0.87775 0.88713 0.85229 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.92 13.67 55.48 0.76 -24.17 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.74 9.48 30.87 0.29 -10.45 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.87 9.76 -0.02 0.00 -4.87 16 10 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 11 C -0.22 -4.57 9.16 -39.42 -0.36 -4.93 16 12 C -0.08 -1.44 9.96 -39.41 -0.39 -1.83 16 13 C 0.04 0.69 6.30 -83.62 -0.53 0.16 16 14 N -0.63 -8.80 5.34 -14.23 -0.08 -8.88 16 15 C 0.64 9.34 8.59 54.05 0.46 9.81 16 16 O -0.56 -9.86 13.04 -19.29 -0.25 -10.12 16 17 O -0.36 -4.19 10.31 -40.36 -0.42 -4.61 16 18 C 0.04 0.37 4.47 -25.65 -0.11 0.25 16 19 C 0.03 0.24 9.08 37.64 0.34 0.59 16 20 O -0.37 -3.69 12.46 -35.23 -0.44 -4.13 16 21 C 0.04 0.34 9.06 37.64 0.34 0.68 16 22 C -0.06 -1.25 8.68 -39.42 -0.34 -1.59 16 23 C -0.18 -3.83 9.98 -39.42 -0.39 -4.23 16 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.13 2.72 5.63 -52.49 -0.30 2.42 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.41 4.26 8.93 -40.82 -0.36 3.89 16 28 H 0.13 1.36 7.12 -51.93 -0.37 0.99 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.13 2.43 6.25 -52.49 -0.33 2.10 16 34 H 0.12 2.55 8.06 -52.48 -0.42 2.12 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -32.25 302.48 -5.24 -37.48 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -3.30 Total: 6.96 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.05 Total: -7.26 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.68 Total: -33.04 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -1.11 Total: -23.73 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.25 -5.24 -37.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334747348.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.066 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds