Wall clock time and date at job start Fri Apr 10 2020 14:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86806 * 120.00187 * 2 1 4 4 H 1.48497 * 109.46933 * 239.99648 * 3 2 1 5 5 H 1.48506 * 109.46745 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47137 * 119.99625 * 3 2 1 7 7 C 1.40050 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99609 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00076 * 0.02562 * 9 7 2 11 11 N 1.34770 * 119.99925 * 179.97438 * 9 7 2 12 12 C 1.46498 * 120.00150 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47416 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47252 * 305.00212 * 13 12 11 15 15 O 1.42901 * 109.46715 * 65.00230 * 13 12 11 16 16 C 1.35905 * 116.99817 * 204.49009 * 15 13 12 17 17 C 1.38728 * 120.05231 * 354.61806 * 16 15 13 18 18 C 1.38144 * 119.94489 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05285 * 0.02562 * 18 17 16 20 20 C 1.38266 * 120.10984 * 0.26724 * 19 18 17 21 21 C 1.38140 * 120.05892 * 359.45509 * 20 19 18 22 22 C 1.50706 * 109.46957 * 185.00093 * 13 12 11 23 23 O 1.20827 * 119.99476 * 245.00080 * 22 13 12 24 24 O 1.34219 * 120.00122 * 65.00512 * 22 13 12 25 25 H 0.97006 * 119.99912 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00371 * 0.02562 * 11 9 7 27 27 H 1.09006 * 109.46956 * 60.00445 * 12 11 9 28 28 H 1.09003 * 109.47333 * 300.00274 * 12 11 9 29 29 H 1.08003 * 120.03081 * 359.96127 * 17 16 15 30 30 H 1.08000 * 119.97620 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.94696 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.96905 * 179.70405 * 20 19 18 33 33 H 1.07998 * 120.03677 * 180.27373 * 21 20 19 34 34 H 0.96696 * 117.00249 * 180.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6477 0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.2107 -6.0794 0.0007 14 1 2.8955 -5.9725 -0.8405 15 8 2.9520 -6.0714 1.2224 16 6 4.1754 -6.6629 1.2056 17 6 4.6062 -7.3359 0.0716 18 6 5.8504 -7.9359 0.0567 19 6 6.6660 -7.8665 1.1710 20 6 6.2365 -7.2014 2.3046 21 6 4.9955 -6.5949 2.3225 22 6 1.4613 -7.3810 -0.1237 23 8 1.4799 -8.1779 0.7843 24 8 0.7734 -7.6549 -1.2431 25 1 -0.4850 0.8401 -0.0004 26 1 2.9189 -3.6477 0.0009 27 1 0.5902 -4.9740 -0.8904 28 1 0.5894 -4.9744 0.8897 29 1 3.9692 -7.3910 -0.7989 30 1 6.1864 -8.4597 -0.8260 31 1 7.6383 -8.3365 1.1577 32 1 6.8735 -7.1527 3.1754 33 1 4.6622 -6.0717 3.2066 34 1 0.3083 -8.5020 -1.2764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:35 Heat of formation + Delta-G solvation = -136.000727 kcal Electronic energy + Delta-G solvation = -21192.772204 eV Core-core repulsion = 17670.278761 eV Total energy + Delta-G solvation = -3522.493443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05477 -39.59699 -37.80021 -37.07328 -36.13535 -33.72642 -32.39005 -31.20011 -30.40115 -29.27828 -26.49399 -24.04896 -23.12340 -22.52761 -20.91401 -19.82382 -18.64571 -18.30252 -17.43927 -17.05750 -16.12490 -15.82829 -15.66413 -15.27364 -14.59930 -14.46580 -14.19515 -13.97565 -13.68450 -13.55089 -13.20146 -12.84745 -12.35091 -11.89358 -11.86266 -11.74818 -11.52635 -11.42411 -11.21131 -10.97735 -10.78939 -10.59525 -10.45439 -10.25943 -9.11090 -8.86904 -8.31664 -7.69681 -7.65082 -6.21706 -4.67336 1.22737 1.34294 1.96574 2.53750 3.13995 3.15663 3.20626 3.22659 3.71520 4.08494 4.49420 4.55308 4.63862 4.73676 4.80114 4.89837 5.01198 5.16753 5.25685 5.33640 5.49848 5.70681 5.88670 6.10828 6.14209 6.23136 6.28295 6.29695 6.41494 6.64374 7.23627 7.41208 7.72091 7.81410 7.95382 8.27159 8.99567 9.43062 10.55115 10.73007 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.004612 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.068574 B = 6069.542336 C = 7254.628256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.762 5.762 12 C 0.147 3.853 13 C 0.089 3.911 14 H 0.116 0.884 15 O -0.272 6.272 16 C 0.133 3.867 17 C -0.210 4.210 18 C -0.079 4.079 19 C -0.161 4.161 20 C -0.080 4.080 21 C -0.144 4.144 22 C 0.461 3.539 23 O -0.495 6.495 24 O -0.507 6.507 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.713 -14.800 -1.025 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.462 6.462 11 N -0.420 5.420 12 C 0.021 3.979 13 C 0.030 3.970 14 H 0.133 0.867 15 O -0.184 6.184 16 C 0.088 3.912 17 C -0.229 4.229 18 C -0.097 4.097 19 C -0.179 4.179 20 C -0.099 4.099 21 C -0.163 4.163 22 C 0.301 3.699 23 O -0.381 6.381 24 O -0.319 6.319 25 H 0.080 0.920 26 H 0.215 0.785 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 9.711 -14.441 -0.587 17.413 hybrid contribution 0.607 -0.038 -0.214 0.645 sum 10.318 -14.479 -0.801 17.797 Atomic orbital electron populations 1.70004 1.07076 1.27486 1.34997 1.25702 0.94630 1.00304 0.92576 0.86411 0.79803 0.80922 0.79484 1.19258 1.20538 1.19237 1.20813 0.93611 0.89136 1.54411 0.91330 1.18231 0.87208 0.82131 0.76368 1.90613 1.14010 1.86613 1.54930 1.46094 1.08685 1.03943 1.83253 1.20899 0.91934 0.81811 1.03232 1.22313 0.94667 0.91236 0.88777 0.86670 1.86373 1.26661 1.72079 1.33293 1.19125 0.84766 0.92629 0.94665 1.21198 0.99197 1.04285 0.98231 1.20893 0.93076 0.97463 0.98292 1.21046 1.00412 1.02602 0.93875 1.20975 0.94875 0.95815 0.98186 1.20489 0.94128 1.03910 0.97761 1.23918 0.77315 0.88957 0.79721 1.90754 1.59072 1.48647 1.39672 1.84554 1.61992 1.44592 1.40779 0.91970 0.78460 0.89605 0.91408 0.86101 0.85854 0.85971 0.85301 0.84816 0.72891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.80 11.83 55.55 0.66 -22.14 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.93 29.56 -169.99 -5.02 14.91 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.14 9.54 -35.63 -0.34 -15.48 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.60 7.75 -12.99 -0.10 15.50 16 10 O -0.58 -18.50 15.02 5.20 0.08 -18.42 16 11 N -0.76 -16.69 5.50 -61.72 -0.34 -17.03 16 12 C 0.15 2.75 5.32 -4.04 -0.02 2.73 16 13 C 0.09 1.33 2.19 -27.88 -0.06 1.27 16 14 H 0.12 1.47 6.34 -51.93 -0.33 1.14 16 15 O -0.27 -4.45 9.33 -39.35 -0.37 -4.82 16 16 C 0.13 1.94 6.45 -39.22 -0.25 1.69 16 17 C -0.21 -2.66 8.70 -39.44 -0.34 -3.01 16 18 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 19 C -0.16 -1.63 10.04 -39.56 -0.40 -2.02 16 20 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 21 C -0.14 -1.89 9.99 -39.43 -0.39 -2.28 16 22 C 0.46 6.55 6.70 36.01 0.24 6.79 16 23 O -0.50 -8.33 17.13 -25.46 -0.44 -8.77 16 24 O -0.51 -5.56 13.39 -39.23 -0.53 -6.08 16 25 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 26 H 0.38 7.46 8.45 -40.82 -0.35 7.12 16 27 H 0.09 1.60 8.12 -51.93 -0.42 1.18 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.12 1.39 5.68 -52.48 -0.30 1.09 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.41 2.56 9.10 45.56 0.41 2.97 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -36.74 309.54 -6.49 -43.23 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.64 Total: 9.45 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.56 Total: 5.01 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.32 Total: -39.17 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.25 Total: -38.09 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.74 -6.49 -43.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.768 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds