Wall clock time and date at job start Fri Apr 10 2020 14:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86806 * 120.00187 * 2 1 4 4 H 1.48497 * 109.46933 * 239.99648 * 3 2 1 5 5 H 1.48506 * 109.46745 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47137 * 119.99625 * 3 2 1 7 7 C 1.40050 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99609 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00076 * 0.02562 * 9 7 2 11 11 N 1.34770 * 119.99925 * 179.97438 * 9 7 2 12 12 C 1.46498 * 120.00150 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47416 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47252 * 305.00212 * 13 12 11 15 15 O 1.42901 * 109.46715 * 65.00230 * 13 12 11 16 16 C 1.35905 * 116.99817 * 204.49009 * 15 13 12 17 17 C 1.38728 * 120.05231 * 354.61806 * 16 15 13 18 18 C 1.38144 * 119.94489 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05285 * 0.02562 * 18 17 16 20 20 C 1.38266 * 120.10984 * 0.26724 * 19 18 17 21 21 C 1.38140 * 120.05892 * 359.45509 * 20 19 18 22 22 C 1.50706 * 109.46957 * 185.00093 * 13 12 11 23 23 O 1.20827 * 119.99476 * 245.00080 * 22 13 12 24 24 O 1.34219 * 120.00122 * 65.00512 * 22 13 12 25 25 H 0.97006 * 119.99912 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00371 * 0.02562 * 11 9 7 27 27 H 1.09006 * 109.46956 * 60.00445 * 12 11 9 28 28 H 1.09003 * 109.47333 * 300.00274 * 12 11 9 29 29 H 1.08003 * 120.03081 * 359.96127 * 17 16 15 30 30 H 1.08000 * 119.97620 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.94696 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.96905 * 179.70405 * 20 19 18 33 33 H 1.07998 * 120.03677 * 180.27373 * 21 20 19 34 34 H 0.96696 * 117.00249 * 180.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6477 0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.2107 -6.0794 0.0007 14 1 2.8955 -5.9725 -0.8405 15 8 2.9520 -6.0714 1.2224 16 6 4.1754 -6.6629 1.2056 17 6 4.6062 -7.3359 0.0716 18 6 5.8504 -7.9359 0.0567 19 6 6.6660 -7.8665 1.1710 20 6 6.2365 -7.2014 2.3046 21 6 4.9955 -6.5949 2.3225 22 6 1.4613 -7.3810 -0.1237 23 8 1.4799 -8.1779 0.7843 24 8 0.7734 -7.6549 -1.2431 25 1 -0.4850 0.8401 -0.0004 26 1 2.9189 -3.6477 0.0009 27 1 0.5902 -4.9740 -0.8904 28 1 0.5894 -4.9744 0.8897 29 1 3.9692 -7.3910 -0.7989 30 1 6.1864 -8.4597 -0.8260 31 1 7.6383 -8.3365 1.1577 32 1 6.8735 -7.1527 3.1754 33 1 4.6622 -6.0717 3.2066 34 1 0.3083 -8.5020 -1.2764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:35 Heat of formation + Delta-G solvation = -163.717836 kcal Electronic energy + Delta-G solvation = -21193.974108 eV Core-core repulsion = 17670.278761 eV Total energy + Delta-G solvation = -3523.695347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17871 -40.61446 -39.46474 -38.45127 -37.23366 -35.50533 -34.49519 -32.25505 -31.63339 -30.39986 -28.47245 -25.59773 -24.09969 -23.47322 -22.01076 -21.79992 -19.80108 -19.52886 -19.04777 -18.30188 -17.50643 -17.03553 -16.99070 -16.67360 -15.97743 -15.85998 -15.63203 -15.34756 -15.15798 -14.53312 -14.38926 -14.15340 -14.03868 -13.56137 -13.11685 -12.91793 -12.82300 -12.70528 -12.65824 -12.59617 -12.50058 -12.05084 -11.80654 -11.71319 -10.91152 -9.98387 -9.92710 -9.60904 -9.26951 -8.29564 -6.86167 0.35524 0.43676 0.80844 1.42263 1.45568 1.48579 1.57525 2.02109 2.26877 2.46509 2.83040 3.00372 3.39979 3.51963 3.61068 3.87613 3.90635 4.04960 4.25653 4.33391 4.47540 4.54105 4.59465 4.69946 5.05372 5.28994 5.32577 5.34360 5.44309 5.57016 5.78438 5.84013 6.06107 6.22055 6.25550 6.76656 6.86640 7.45457 8.44891 8.65740 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.004612 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.068574 B = 6069.542336 C = 7254.628256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.998 3.002 4 H -0.252 1.252 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.540 3.460 10 O -0.629 6.629 11 N -0.749 5.749 12 C 0.150 3.850 13 C 0.097 3.903 14 H 0.140 0.860 15 O -0.298 6.298 16 C 0.101 3.899 17 C -0.221 4.221 18 C -0.082 4.082 19 C -0.156 4.156 20 C -0.080 4.080 21 C -0.167 4.167 22 C 0.472 3.528 23 O -0.523 6.523 24 O -0.497 6.497 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.557 -15.209 -1.761 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.176 1.176 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.607 4.607 8 H 0.107 0.893 9 C 0.345 3.655 10 O -0.516 6.516 11 N -0.404 5.404 12 C 0.025 3.975 13 C 0.039 3.961 14 H 0.157 0.843 15 O -0.211 6.211 16 C 0.057 3.943 17 C -0.240 4.240 18 C -0.099 4.099 19 C -0.174 4.174 20 C -0.097 4.097 21 C -0.185 4.185 22 C 0.313 3.687 23 O -0.412 6.412 24 O -0.311 6.311 25 H 0.085 0.915 26 H 0.231 0.769 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.146 0.854 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.146 0.854 34 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 12.593 -14.915 -1.344 19.567 hybrid contribution -0.238 -0.047 0.004 0.242 sum 12.355 -14.962 -1.340 19.450 Atomic orbital electron populations 1.70171 1.09521 1.29116 1.36142 1.26959 0.95515 1.04902 0.91145 0.85067 0.78206 0.74696 0.80306 1.17622 1.19910 1.18020 1.21372 0.94801 0.89824 1.54715 0.89316 1.18596 0.86840 0.83996 0.76089 1.90567 1.16059 1.87759 1.57229 1.45674 1.09299 1.03833 1.81636 1.20835 0.92612 0.81937 1.02098 1.22062 0.94296 0.90134 0.89613 0.84252 1.86302 1.27955 1.73119 1.33732 1.19440 0.84396 0.94318 0.96170 1.21386 1.00301 1.04451 0.97851 1.21308 0.92231 0.96765 0.99641 1.21495 1.01472 1.01403 0.93064 1.21343 0.94042 0.94781 0.99576 1.20718 0.95316 1.05004 0.97511 1.23598 0.76961 0.88241 0.79879 1.90745 1.60124 1.49520 1.40833 1.84502 1.61386 1.46237 1.38984 0.91468 0.76907 0.89524 0.93867 0.85440 0.83018 0.82731 0.82594 0.85391 0.70214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.95 11.83 21.84 0.26 -49.70 16 2 C 0.03 1.67 5.50 85.31 0.47 2.14 16 3 Si 1.00 40.52 29.56 68.60 2.03 42.55 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.57 -32.12 9.54 24.83 0.24 -31.88 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.43 16 9 C 0.54 31.20 7.75 86.36 0.67 31.87 16 10 O -0.63 -41.93 15.02 -4.31 -0.06 -42.00 16 11 N -0.75 -33.51 5.50 -467.40 -2.57 -36.08 16 12 C 0.15 5.81 5.32 86.38 0.46 6.27 16 13 C 0.10 2.93 2.19 29.85 0.07 3.00 16 14 H 0.14 3.44 6.34 -2.39 -0.02 3.42 16 15 O -0.30 -9.96 9.33 -73.45 -0.69 -10.65 16 16 C 0.10 2.92 6.45 22.51 0.15 3.07 16 17 C -0.22 -5.29 8.70 22.36 0.19 -5.09 16 18 C -0.08 -1.52 10.04 22.25 0.22 -1.30 16 19 C -0.16 -2.64 10.04 22.28 0.22 -2.42 16 20 C -0.08 -1.53 10.04 22.25 0.22 -1.31 16 21 C -0.17 -4.32 9.99 22.36 0.22 -4.10 16 22 C 0.47 13.22 6.70 71.24 0.48 13.70 16 23 O -0.52 -17.60 17.13 28.38 0.49 -17.12 16 24 O -0.50 -10.19 13.39 -51.31 -0.69 -10.88 16 25 H 0.28 15.20 8.29 -92.70 -0.77 14.43 16 26 H 0.40 15.54 8.45 -92.71 -0.78 14.76 16 27 H 0.09 3.33 8.12 -2.38 -0.02 3.31 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.13 2.73 5.68 -2.91 -0.02 2.71 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 32 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 34 H 0.43 4.58 9.10 -74.06 -0.67 3.91 16 Total: -1.00 -82.49 309.54 2.08 -80.40 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.29 Total: 29.52 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 3.61 Total: 13.94 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.31 Total: -85.77 kcal Atomic # 8 Polarization: -79.69 SS G_CDS: -0.95 Total: -80.64 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -82.49 2.08 -80.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.314 kcal (2) G-P(sol) polarization free energy of solvation -82.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds