Wall clock time and date at job start Fri Apr 10 2020 13:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47544 * 270.00613 * 3 2 1 5 5 H 1.48506 * 109.47224 * 30.00506 * 3 2 1 6 6 H 1.48503 * 109.47089 * 150.00338 * 3 2 1 7 7 C 1.37878 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99507 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47393 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99594 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00254 * 180.02562 * 11 10 9 14 14 C 1.40139 * 120.00102 * 184.47985 * 13 11 10 15 15 C 1.38618 * 120.01827 * 325.30271 * 14 13 11 16 16 C 1.38473 * 120.33434 * 180.02562 * 15 14 13 17 17 C 1.37794 * 120.36606 * 359.97438 * 16 15 14 18 18 C 1.39828 * 120.03152 * 0.02562 * 17 16 15 19 19 C 1.47411 * 120.16418 * 179.97438 * 18 17 16 20 20 O 1.21512 * 120.00065 * 179.97438 * 19 18 17 21 21 O 1.34750 * 120.00126 * 359.72945 * 19 18 17 22 22 C 1.39289 * 120.01602 * 145.55876 * 14 13 11 23 23 O 1.35706 * 120.18330 * 0.02562 * 22 14 13 24 24 H 0.97008 * 119.99793 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47753 * 60.00132 * 9 7 2 26 26 H 1.09000 * 109.47196 * 300.00143 * 9 7 2 27 27 H 1.09000 * 109.47159 * 60.00087 * 10 9 7 28 28 H 1.09000 * 109.47317 * 300.00174 * 10 9 7 29 29 H 0.97008 * 119.99879 * 4.47619 * 13 11 10 30 30 H 1.07997 * 119.83423 * 359.97438 * 15 14 13 31 31 H 1.07993 * 119.81860 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.98682 * 180.02562 * 17 16 15 33 33 H 0.96702 * 117.00199 * 179.97438 * 21 19 18 34 34 H 0.96707 * 113.99625 * 270.22693 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 8 0.2789 -4.9671 -0.0015 13 7 2.1656 -6.1343 -0.0031 14 6 1.4681 -7.3460 -0.0985 15 6 0.2235 -7.4785 0.4972 16 6 -0.4712 -8.6730 0.4075 17 6 0.0669 -9.7422 -0.2751 18 6 1.3213 -9.6255 -0.8818 19 6 1.9000 -10.7676 -1.6123 20 8 2.9901 -10.6627 -2.1387 21 8 1.2223 -11.9296 -1.6920 22 6 2.0275 -8.4197 -0.7874 23 8 3.2482 -8.2967 -1.3673 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 3.1335 -6.1356 0.0624 30 1 -0.2062 -6.6462 1.0347 31 1 -1.4401 -8.7672 0.8751 32 1 -0.4804 -10.6709 -0.3416 33 1 1.6421 -12.6499 -2.1819 34 1 3.2197 -7.9785 -2.2801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:38 Heat of formation + Delta-G solvation = -148.720061 kcal Electronic energy + Delta-G solvation = -20719.138966 eV Core-core repulsion = 17196.093971 eV Total energy + Delta-G solvation = -3523.044995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02526 -40.00899 -38.61320 -36.89967 -36.12123 -34.63652 -33.57732 -31.42350 -30.71110 -29.27701 -25.85256 -24.95807 -23.03538 -22.00305 -21.23036 -19.78377 -18.69039 -18.40292 -17.54125 -17.14395 -16.11686 -16.07021 -15.81272 -15.60483 -15.39943 -14.85848 -14.48928 -14.40563 -13.74708 -13.39511 -12.86388 -12.55524 -12.31518 -12.25839 -12.08910 -11.77716 -11.30642 -11.23542 -10.98325 -10.70288 -10.65284 -10.34702 -10.06725 -9.77510 -9.35676 -9.16324 -9.03314 -8.39079 -8.20133 -6.02452 -4.07238 0.44137 0.98480 2.34143 2.65856 2.94655 3.24236 3.29997 3.36691 3.39214 3.46623 3.94202 4.42527 4.65487 4.79059 4.94123 5.08639 5.25044 5.32950 5.44671 5.60691 5.85723 5.98720 6.07388 6.12240 6.16638 6.20853 6.34091 6.71193 6.74342 7.41746 7.53636 7.66327 7.66643 7.74875 7.98154 8.27817 8.45686 9.00440 9.56937 11.08392 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.040824 B = 0.003161 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.711573 B = 8856.094630 C = 9371.531866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.511 3.489 12 O -0.514 6.514 13 N -0.680 5.680 14 C 0.122 3.878 15 C -0.073 4.073 16 C -0.123 4.123 17 C -0.070 4.070 18 C -0.146 4.146 19 C 0.528 3.472 20 O -0.501 6.501 21 O -0.515 6.515 22 C 0.140 3.860 23 O -0.476 6.476 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.415 0.585 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.413 0.587 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -21.979 -1.381 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.301 3.699 12 O -0.388 6.388 13 N -0.327 5.327 14 C 0.026 3.974 15 C -0.094 4.094 16 C -0.141 4.141 17 C -0.089 4.089 18 C -0.148 4.148 19 C 0.372 3.628 20 O -0.389 6.389 21 O -0.327 6.327 22 C 0.092 3.908 23 O -0.286 6.286 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.252 0.748 30 H 0.172 0.828 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.271 0.729 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.747 -21.591 -0.786 21.676 hybrid contribution 1.085 0.574 -0.816 1.474 sum 2.833 -21.018 -1.602 21.268 Atomic orbital electron populations 1.69992 1.06069 1.26706 1.49992 1.25021 0.94841 0.99293 0.95174 0.86576 0.79780 0.83389 0.78114 1.20638 1.21185 1.19844 1.21189 0.92978 0.90888 1.51698 0.92508 1.18924 0.93107 0.89289 0.98747 1.21929 1.00880 0.90927 1.03085 1.21936 0.88836 0.85359 0.73778 1.90663 1.14338 1.87116 1.46652 1.43893 1.11173 1.03556 1.74046 1.18059 0.94124 0.86038 0.99159 1.21685 0.93357 0.98438 0.95890 1.21109 1.00732 0.92201 1.00070 1.21324 0.93035 0.99499 0.95011 1.19147 0.96912 0.92547 1.06236 1.20626 0.82455 0.82151 0.77550 1.90924 1.20627 1.83102 1.44271 1.84561 1.52607 1.23441 1.72096 1.18119 0.85851 0.91112 0.95757 1.84739 1.23229 1.88673 1.32003 0.92875 0.95720 0.95671 0.89640 0.89666 0.74846 0.82827 0.84460 0.84171 0.72874 0.74676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.13 -2.42 5.64 -27.88 -0.16 -2.58 16 11 C 0.51 9.06 7.67 -10.99 -0.08 8.97 16 12 O -0.51 -10.90 13.39 5.55 0.07 -10.83 16 13 N -0.68 -9.38 5.19 -9.77 -0.05 -9.43 16 14 C 0.12 1.67 6.32 -83.53 -0.53 1.14 16 15 C -0.07 -0.98 8.69 -39.35 -0.34 -1.33 16 16 C -0.12 -1.29 10.02 -39.66 -0.40 -1.69 16 17 C -0.07 -0.69 9.61 -39.15 -0.38 -1.07 16 18 C -0.15 -1.70 5.88 -104.89 -0.62 -2.32 16 19 C 0.53 5.90 8.26 34.47 0.28 6.19 16 20 O -0.50 -6.85 15.94 -26.61 -0.42 -7.27 16 21 O -0.51 -3.97 12.68 -40.63 -0.51 -4.49 16 22 C 0.14 1.77 6.74 -38.51 -0.26 1.51 16 23 O -0.48 -5.66 11.13 -40.73 -0.45 -6.12 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.41 4.69 8.56 -40.82 -0.35 4.34 16 30 H 0.15 2.33 6.18 -52.49 -0.32 2.01 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.14 1.08 7.61 -52.48 -0.40 0.68 16 33 H 0.41 1.33 9.11 45.56 0.42 1.74 16 34 H 0.40 3.50 9.06 45.56 0.41 3.91 16 LS Contribution 307.25 15.07 4.63 4.63 Total: -1.00 -35.39 307.25 -5.92 -41.31 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -1.90 Total: 5.65 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.01 Total: -3.66 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.69 Total: -35.47 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.32 Total: -28.71 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.39 -5.92 -41.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.407 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds