Wall clock time and date at job start Fri Apr 10 2020 13:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47544 * 270.00613 * 3 2 1 5 5 H 1.48506 * 109.47224 * 30.00506 * 3 2 1 6 6 H 1.48503 * 109.47089 * 150.00338 * 3 2 1 7 7 C 1.37878 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99507 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47393 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99594 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00254 * 180.02562 * 11 10 9 14 14 C 1.40139 * 120.00102 * 184.47985 * 13 11 10 15 15 C 1.38618 * 120.01827 * 325.30271 * 14 13 11 16 16 C 1.38473 * 120.33434 * 180.02562 * 15 14 13 17 17 C 1.37794 * 120.36606 * 359.97438 * 16 15 14 18 18 C 1.39828 * 120.03152 * 0.02562 * 17 16 15 19 19 C 1.47411 * 120.16418 * 179.97438 * 18 17 16 20 20 O 1.21512 * 120.00065 * 179.97438 * 19 18 17 21 21 O 1.34750 * 120.00126 * 359.72945 * 19 18 17 22 22 C 1.39289 * 120.01602 * 145.55876 * 14 13 11 23 23 O 1.35706 * 120.18330 * 0.02562 * 22 14 13 24 24 H 0.97008 * 119.99793 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47753 * 60.00132 * 9 7 2 26 26 H 1.09000 * 109.47196 * 300.00143 * 9 7 2 27 27 H 1.09000 * 109.47159 * 60.00087 * 10 9 7 28 28 H 1.09000 * 109.47317 * 300.00174 * 10 9 7 29 29 H 0.97008 * 119.99879 * 4.47619 * 13 11 10 30 30 H 1.07997 * 119.83423 * 359.97438 * 15 14 13 31 31 H 1.07993 * 119.81860 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.98682 * 180.02562 * 17 16 15 33 33 H 0.96702 * 117.00199 * 179.97438 * 21 19 18 34 34 H 0.96707 * 113.99625 * 270.22693 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 8 0.2789 -4.9671 -0.0015 13 7 2.1656 -6.1343 -0.0031 14 6 1.4681 -7.3460 -0.0985 15 6 0.2235 -7.4785 0.4972 16 6 -0.4712 -8.6730 0.4075 17 6 0.0669 -9.7422 -0.2751 18 6 1.3213 -9.6255 -0.8818 19 6 1.9000 -10.7676 -1.6123 20 8 2.9901 -10.6627 -2.1387 21 8 1.2223 -11.9296 -1.6920 22 6 2.0275 -8.4197 -0.7874 23 8 3.2482 -8.2967 -1.3673 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 3.1335 -6.1356 0.0624 30 1 -0.2062 -6.6462 1.0347 31 1 -1.4401 -8.7672 0.8751 32 1 -0.4804 -10.6709 -0.3416 33 1 1.6421 -12.6499 -2.1819 34 1 3.2197 -7.9785 -2.2801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:37 Heat of formation + Delta-G solvation = -175.854162 kcal Electronic energy + Delta-G solvation = -20720.315589 eV Core-core repulsion = 17196.093971 eV Total energy + Delta-G solvation = -3524.221618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.02169 -41.06176 -39.70783 -37.80428 -36.90361 -35.89613 -35.54819 -33.16175 -31.79412 -30.39443 -27.70517 -25.87068 -24.47956 -23.05675 -22.54008 -21.12459 -19.66875 -19.28025 -18.84804 -18.40692 -17.70960 -17.06227 -16.82072 -16.74074 -16.44134 -16.40617 -16.06210 -15.36591 -15.10461 -14.43162 -14.35802 -14.20117 -13.50260 -13.42860 -13.22029 -13.02843 -12.82362 -12.55111 -12.49162 -12.18150 -11.93722 -11.69050 -11.65754 -11.43103 -11.29629 -10.74820 -10.56258 -10.00293 -9.24264 -8.18437 -6.31792 -0.46938 0.04762 1.39987 1.42981 1.44865 1.55720 1.61803 1.83049 2.18987 2.43708 2.55108 3.04282 3.15183 3.78854 3.84928 3.97192 4.13279 4.24720 4.42289 4.50610 4.52123 4.70695 5.01096 5.03616 5.09170 5.26335 5.36996 5.50247 5.56902 5.62481 5.71131 5.84954 6.17037 6.35863 6.59080 6.86082 6.98406 7.11983 7.38423 8.93946 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.040824 B = 0.003161 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.711573 B = 8856.094630 C = 9371.531866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.117 4.117 11 C 0.516 3.484 12 O -0.558 6.558 13 N -0.659 5.659 14 C 0.097 3.903 15 C -0.090 4.090 16 C -0.118 4.118 17 C -0.051 4.051 18 C -0.157 4.157 19 C 0.535 3.465 20 O -0.531 6.531 21 O -0.502 6.502 22 C 0.141 3.859 23 O -0.483 6.483 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.013 1.013 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.428 0.572 30 H 0.130 0.870 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.434 0.566 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 -23.497 -1.581 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.306 3.694 12 O -0.435 6.435 13 N -0.307 5.307 14 C 0.002 3.998 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.070 4.070 18 C -0.160 4.160 19 C 0.380 3.620 20 O -0.422 6.422 21 O -0.316 6.316 22 C 0.093 3.907 23 O -0.295 6.295 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.267 0.733 30 H 0.148 0.852 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.296 0.704 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.162 -23.179 -0.998 23.415 hybrid contribution 0.603 0.870 -0.768 1.308 sum 3.765 -22.309 -1.766 22.693 Atomic orbital electron populations 1.70163 1.08184 1.27788 1.51445 1.26086 0.95706 1.03787 0.94692 0.85363 0.78710 0.77968 0.78463 1.19821 1.21233 1.18013 1.21704 0.94020 0.91628 1.50778 0.90656 1.18699 0.93653 0.92101 0.95091 1.21673 0.99456 0.89195 1.05368 1.21585 0.88090 0.86128 0.73590 1.90656 1.16056 1.87752 1.49043 1.43460 1.11631 1.02771 1.72806 1.18171 0.94682 0.86047 1.00883 1.21665 0.93763 0.99058 0.96571 1.21378 1.01442 0.91107 0.99663 1.21647 0.92192 1.00188 0.92927 1.19364 0.97516 0.92538 1.06551 1.20481 0.81942 0.82741 0.76822 1.90918 1.21940 1.83763 1.45598 1.84501 1.52053 1.23043 1.72044 1.18132 0.85947 0.91126 0.95510 1.84702 1.23041 1.88779 1.32985 0.92855 0.99609 0.99422 0.87264 0.87325 0.73303 0.85224 0.81823 0.81097 0.70369 0.73277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.04 2.25 4.26 29.85 0.13 2.38 16 10 C -0.12 -4.43 5.64 29.85 0.17 -4.26 16 11 C 0.52 18.69 7.67 87.66 0.67 19.36 16 12 O -0.56 -24.92 13.39 -3.07 -0.04 -24.96 16 13 N -0.66 -18.04 5.19 -303.21 -1.57 -19.61 16 14 C 0.10 2.63 6.32 38.16 0.24 2.87 16 15 C -0.09 -2.43 8.69 22.42 0.19 -2.23 16 16 C -0.12 -2.28 10.02 22.22 0.22 -2.06 16 17 C -0.05 -0.87 9.61 22.55 0.22 -0.65 16 18 C -0.16 -3.33 5.88 -20.04 -0.12 -3.45 16 19 C 0.54 10.69 8.26 70.24 0.58 11.27 16 20 O -0.53 -13.64 15.94 26.80 0.43 -13.21 16 21 O -0.50 -6.05 12.68 -56.60 -0.72 -6.77 16 22 C 0.14 3.40 6.74 22.96 0.15 3.55 16 23 O -0.48 -10.93 11.13 -69.32 -0.77 -11.70 16 24 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 25 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 26 H -0.01 -0.76 8.10 -2.39 -0.02 -0.78 16 27 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 28 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 29 H 0.43 9.19 8.56 -92.70 -0.79 8.39 16 30 H 0.13 4.16 6.18 -2.91 -0.02 4.14 16 31 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.17 1.87 7.61 -2.91 -0.02 1.85 16 33 H 0.43 1.33 9.11 -74.06 -0.67 0.65 16 34 H 0.41 6.79 9.06 -74.05 -0.67 6.12 16 Total: -1.00 -79.35 307.25 1.84 -77.51 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.95 Total: 13.94 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 3.16 Total: -2.93 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -1.29 Total: -77.53 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -1.10 Total: -56.65 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -79.35 1.84 -77.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.341 kcal (2) G-P(sol) polarization free energy of solvation -79.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds