Wall clock time and date at job start Fri Apr 10 2020 14:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86807 * 119.99620 * 2 1 4 4 H 1.48499 * 109.47079 * 245.00091 * 3 2 1 5 5 H 1.48494 * 109.47201 * 5.00353 * 3 2 1 6 6 H 1.48502 * 109.46688 * 125.00226 * 3 2 1 7 7 C 1.39042 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00231 * 158.80702 * 7 2 1 9 9 N 1.36872 * 119.99872 * 338.80426 * 7 2 1 10 10 C 1.46504 * 119.99857 * 134.89461 * 9 7 2 11 11 C 1.52992 * 109.47246 * 283.24663 * 10 9 7 12 12 C 1.50710 * 109.47113 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99766 * 0.02562 * 12 11 10 14 14 O 1.34226 * 119.99869 * 179.97438 * 12 11 10 15 15 C 1.34771 * 120.00450 * 314.90001 * 9 7 2 16 16 O 1.21595 * 119.99839 * 6.52325 * 15 9 7 17 17 C 1.47739 * 120.00512 * 186.52755 * 15 9 7 18 18 C 1.39676 * 120.12055 * 323.96155 * 17 15 9 19 19 C 1.37945 * 119.96161 * 180.02562 * 18 17 15 20 20 C 1.38302 * 120.20896 * 359.74815 * 19 18 17 21 21 C 1.38836 * 120.25206 * 0.50535 * 20 19 18 22 22 O 1.35905 * 119.97713 * 179.76620 * 21 20 19 23 23 C 1.38462 * 120.03583 * 359.49505 * 21 20 19 24 24 H 0.96997 * 120.00139 * 5.04106 * 1 2 3 25 25 H 1.08998 * 109.46759 * 43.24696 * 10 9 7 26 26 H 1.09001 * 109.47190 * 163.24109 * 10 9 7 27 27 H 1.08998 * 109.47268 * 299.99721 * 11 10 9 28 28 H 1.08994 * 109.47651 * 59.99994 * 11 10 9 29 29 H 0.96701 * 116.99782 * 180.02562 * 14 12 11 30 30 H 1.08006 * 120.02334 * 0.02562 * 18 17 15 31 31 H 1.08002 * 119.89458 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.87568 * 180.26066 * 20 19 18 33 33 H 0.96703 * 114.00566 * 269.72279 * 22 21 20 34 34 H 1.07999 * 120.10752 * 180.22538 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6179 0.0000 4 1 3.0075 1.7507 -1.2689 5 1 1.2872 2.7438 0.1221 6 1 3.1906 1.6450 1.1469 7 6 2.0089 -1.2041 0.0005 8 1 3.0341 -1.2359 -0.3375 9 7 1.3940 -2.3492 0.4296 10 6 1.5328 -3.5878 -0.3404 11 6 0.6281 -3.5264 -1.5726 12 6 0.7714 -4.8003 -2.3650 13 8 1.5200 -5.6684 -1.9829 14 8 0.0667 -4.9710 -3.4946 15 6 0.6608 -2.3373 1.5603 16 8 0.4467 -1.2874 2.1351 17 6 0.1171 -3.5999 2.1016 18 6 -0.3259 -4.6011 1.2343 19 6 -0.8334 -5.7785 1.7433 20 6 -0.9006 -5.9737 3.1108 21 6 -0.4677 -4.9822 3.9810 22 8 -0.5407 -5.1780 5.3239 23 6 0.0436 -3.7964 3.4813 24 1 -0.4850 0.8368 -0.0738 25 1 2.5694 -3.7050 -0.6561 26 1 1.2441 -4.4359 0.2805 27 1 -0.4085 -3.4092 -1.2568 28 1 0.9169 -2.6784 -2.1935 29 1 0.1917 -5.8047 -3.9683 30 1 -0.2710 -4.4537 0.1658 31 1 -1.1752 -6.5522 1.0717 32 1 -1.2951 -6.8993 3.5034 33 1 -1.3719 -4.8823 5.7200 34 1 0.3841 -3.0259 4.1571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:58 Heat of formation + Delta-G solvation = -110.291952 kcal Electronic energy + Delta-G solvation = -21975.342347 eV Core-core repulsion = 18453.963720 eV Total energy + Delta-G solvation = -3521.378627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23461 -39.59361 -38.17158 -36.11551 -36.00542 -34.75003 -32.42761 -30.63664 -30.16301 -29.42659 -25.38774 -24.35677 -22.56358 -22.20673 -20.71892 -19.70896 -18.19000 -17.91782 -16.67381 -16.59961 -16.22746 -15.50279 -15.34943 -15.26566 -14.91095 -14.23111 -14.05769 -13.57581 -13.38920 -12.96469 -12.75073 -12.53573 -11.98902 -11.81421 -11.61573 -11.39236 -11.21421 -11.08737 -10.87489 -10.66299 -10.47330 -10.38955 -10.36322 -10.14842 -8.86798 -8.62230 -8.36204 -8.13054 -7.29684 -6.24102 -3.98319 1.38940 1.58858 2.44674 3.23846 3.26556 3.34321 3.39211 3.68590 4.18954 4.41000 4.51556 4.84759 5.14968 5.18738 5.25750 5.36139 5.43843 5.53098 5.68068 5.82640 5.86064 6.05519 6.12961 6.25145 6.35975 6.51746 6.64457 6.66832 6.74470 6.82409 7.03575 7.53072 7.82461 8.09335 8.16875 8.89395 9.01014 9.48942 10.11529 10.83833 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.008155 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.161623 B = 3432.631907 C = 5411.195462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.360 4.360 8 H 0.083 0.917 9 N -0.438 5.438 10 C 0.094 3.906 11 C -0.128 4.128 12 C 0.480 3.520 13 O -0.521 6.521 14 O -0.519 6.519 15 C 0.506 3.494 16 O -0.523 6.523 17 C -0.078 4.078 18 C -0.124 4.124 19 C -0.112 4.112 20 C -0.146 4.146 21 C 0.093 3.907 22 O -0.501 6.501 23 C -0.105 4.105 24 H 0.268 0.732 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.402 0.598 30 H 0.140 0.860 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.386 0.614 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -10.366 -1.210 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.101 0.899 9 N -0.159 5.159 10 C -0.030 4.030 11 C -0.166 4.166 12 C 0.323 3.677 13 O -0.410 6.410 14 O -0.331 6.331 15 C 0.294 3.706 16 O -0.401 6.401 17 C -0.082 4.082 18 C -0.143 4.143 19 C -0.130 4.130 20 C -0.165 4.165 21 C 0.049 3.951 22 O -0.310 6.310 23 C -0.124 4.124 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.260 0.740 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.241 0.759 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.967 -9.757 -0.600 10.216 hybrid contribution -0.132 0.365 -0.418 0.570 sum -3.099 -9.392 -1.018 9.942 Atomic orbital electron populations 1.69794 1.06734 1.27988 1.40841 1.25293 0.94781 0.99566 0.93846 0.86251 0.79487 0.81661 0.78535 1.20339 1.21099 1.19742 1.18989 0.96300 0.84596 1.48717 0.89928 1.43089 1.46750 1.07933 1.18120 1.21933 0.98968 0.90569 0.91529 1.21927 1.04295 0.92786 0.97618 1.23964 0.75861 0.89377 0.78489 1.90694 1.36850 1.44507 1.68946 1.84619 1.65390 1.45114 1.37946 1.17907 0.83709 0.87063 0.81918 1.90643 1.58147 1.31526 1.59761 1.20467 0.98469 0.95924 0.93331 1.21938 0.98155 0.93341 1.00849 1.20925 0.99843 0.97612 0.94618 1.21367 1.02201 0.99448 0.93521 1.18312 1.00538 0.93380 0.82867 1.84815 1.42560 1.85517 1.18129 1.21431 0.99651 0.96434 0.94904 0.92230 0.91342 0.89048 0.87584 0.86088 0.73998 0.84291 0.85803 0.85860 0.75879 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.09 11.83 55.50 0.66 -22.44 16 2 C 0.08 2.09 4.29 -17.45 -0.07 2.01 16 3 Si 0.91 21.19 29.61 -169.99 -5.03 16.16 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.36 -9.45 9.04 -15.00 -0.14 -9.59 16 8 H 0.08 2.09 7.92 -52.49 -0.42 1.67 16 9 N -0.44 -10.63 2.53 -115.93 -0.29 -10.92 16 10 C 0.09 1.85 4.15 -4.04 -0.02 1.83 16 11 C -0.13 -2.21 5.11 -27.88 -0.14 -2.35 16 12 C 0.48 7.27 8.30 36.01 0.30 7.57 16 13 O -0.52 -8.92 16.74 -18.75 -0.31 -9.24 16 14 O -0.52 -6.30 13.42 -39.25 -0.53 -6.83 16 15 C 0.51 12.81 6.83 -12.38 -0.08 12.72 16 16 O -0.52 -15.29 14.46 5.28 0.08 -15.22 16 17 C -0.08 -1.62 5.45 -104.99 -0.57 -2.20 16 18 C -0.12 -2.20 7.38 -39.15 -0.29 -2.49 16 19 C -0.11 -1.66 10.03 -39.67 -0.40 -2.06 16 20 C -0.15 -2.11 9.98 -39.34 -0.39 -2.51 16 21 C 0.09 1.50 6.70 -39.28 -0.26 1.23 16 22 O -0.50 -6.93 13.50 -19.44 -0.26 -7.19 16 23 C -0.10 -1.99 9.55 -39.01 -0.37 -2.37 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 26 H 0.09 1.72 3.97 -51.93 -0.21 1.51 16 27 H 0.11 1.86 6.98 -51.93 -0.36 1.50 16 28 H 0.12 2.22 8.07 -51.93 -0.42 1.80 16 29 H 0.40 2.92 9.10 45.56 0.41 3.33 16 30 H 0.14 2.40 3.37 -52.48 -0.18 2.22 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.39 3.41 9.06 45.56 0.41 3.82 16 34 H 0.13 2.60 8.01 -52.49 -0.42 2.18 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -34.23 299.22 -5.20 -39.43 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -1.57 Total: 9.93 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.44 Total: 1.81 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.36 Total: -33.36 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.03 Total: -38.48 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.23 -5.20 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.860 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds