Wall clock time and date at job start Fri Apr 10 2020 14:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86807 * 119.99620 * 2 1 4 4 H 1.48499 * 109.47079 * 245.00091 * 3 2 1 5 5 H 1.48494 * 109.47201 * 5.00353 * 3 2 1 6 6 H 1.48502 * 109.46688 * 125.00226 * 3 2 1 7 7 C 1.39042 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00231 * 158.80702 * 7 2 1 9 9 N 1.36872 * 119.99872 * 338.80426 * 7 2 1 10 10 C 1.46504 * 119.99857 * 134.89461 * 9 7 2 11 11 C 1.52992 * 109.47246 * 283.24663 * 10 9 7 12 12 C 1.50710 * 109.47113 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99766 * 0.02562 * 12 11 10 14 14 O 1.34226 * 119.99869 * 179.97438 * 12 11 10 15 15 C 1.34771 * 120.00450 * 314.90001 * 9 7 2 16 16 O 1.21595 * 119.99839 * 6.52325 * 15 9 7 17 17 C 1.47739 * 120.00512 * 186.52755 * 15 9 7 18 18 C 1.39676 * 120.12055 * 323.96155 * 17 15 9 19 19 C 1.37945 * 119.96161 * 180.02562 * 18 17 15 20 20 C 1.38302 * 120.20896 * 359.74815 * 19 18 17 21 21 C 1.38836 * 120.25206 * 0.50535 * 20 19 18 22 22 O 1.35905 * 119.97713 * 179.76620 * 21 20 19 23 23 C 1.38462 * 120.03583 * 359.49505 * 21 20 19 24 24 H 0.96997 * 120.00139 * 5.04106 * 1 2 3 25 25 H 1.08998 * 109.46759 * 43.24696 * 10 9 7 26 26 H 1.09001 * 109.47190 * 163.24109 * 10 9 7 27 27 H 1.08998 * 109.47268 * 299.99721 * 11 10 9 28 28 H 1.08994 * 109.47651 * 59.99994 * 11 10 9 29 29 H 0.96701 * 116.99782 * 180.02562 * 14 12 11 30 30 H 1.08006 * 120.02334 * 0.02562 * 18 17 15 31 31 H 1.08002 * 119.89458 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.87568 * 180.26066 * 20 19 18 33 33 H 0.96703 * 114.00566 * 269.72279 * 22 21 20 34 34 H 1.07999 * 120.10752 * 180.22538 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6179 0.0000 4 1 3.0075 1.7507 -1.2689 5 1 1.2872 2.7438 0.1221 6 1 3.1906 1.6450 1.1469 7 6 2.0089 -1.2041 0.0005 8 1 3.0341 -1.2359 -0.3375 9 7 1.3940 -2.3492 0.4296 10 6 1.5328 -3.5878 -0.3404 11 6 0.6281 -3.5264 -1.5726 12 6 0.7714 -4.8003 -2.3650 13 8 1.5200 -5.6684 -1.9829 14 8 0.0667 -4.9710 -3.4946 15 6 0.6608 -2.3373 1.5603 16 8 0.4467 -1.2874 2.1351 17 6 0.1171 -3.5999 2.1016 18 6 -0.3259 -4.6011 1.2343 19 6 -0.8334 -5.7785 1.7433 20 6 -0.9006 -5.9737 3.1108 21 6 -0.4677 -4.9822 3.9810 22 8 -0.5407 -5.1780 5.3239 23 6 0.0436 -3.7964 3.4813 24 1 -0.4850 0.8368 -0.0738 25 1 2.5694 -3.7050 -0.6561 26 1 1.2441 -4.4359 0.2805 27 1 -0.4085 -3.4092 -1.2568 28 1 0.9169 -2.6784 -2.1935 29 1 0.1917 -5.8047 -3.9683 30 1 -0.2710 -4.4537 0.1658 31 1 -1.1752 -6.5522 1.0717 32 1 -1.2951 -6.8993 3.5034 33 1 -1.3719 -4.8823 5.7200 34 1 0.3841 -3.0259 4.1571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:57 Heat of formation + Delta-G solvation = -136.500484 kcal Electronic energy + Delta-G solvation = -21976.478834 eV Core-core repulsion = 18453.963720 eV Total energy + Delta-G solvation = -3522.515114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61418 -40.91402 -39.70074 -37.45374 -37.18552 -36.51187 -34.29739 -32.10391 -31.79018 -30.75399 -27.22916 -25.88413 -24.09729 -23.50532 -22.06666 -21.32939 -19.63532 -19.15597 -18.30068 -17.94411 -17.59869 -17.02711 -16.75470 -16.67692 -16.52276 -15.80794 -15.62474 -15.18256 -14.86700 -14.32060 -14.28912 -14.01246 -13.47215 -13.34637 -13.14992 -12.89380 -12.75774 -12.69635 -12.51164 -12.37428 -12.19627 -11.85277 -11.63166 -11.56378 -10.83688 -10.26020 -9.92193 -9.54671 -9.26037 -8.25957 -6.03979 0.03585 0.28218 1.22469 1.38550 1.47376 1.51009 1.99305 2.28300 2.34382 2.84391 2.96717 3.24033 3.37781 3.88900 3.91377 3.98910 4.03424 4.12442 4.29496 4.52533 4.53351 4.62128 4.82084 4.84904 4.95629 5.08420 5.35496 5.37524 5.44597 5.47968 5.63985 5.81389 6.16848 6.83605 6.93264 7.05318 7.09562 7.54369 8.20035 8.82191 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.008155 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.161623 B = 3432.631907 C = 5411.195462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.033 3.967 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.449 5.449 10 C 0.096 3.904 11 C -0.120 4.120 12 C 0.500 3.500 13 O -0.539 6.539 14 O -0.509 6.509 15 C 0.495 3.505 16 O -0.580 6.580 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.098 4.098 20 C -0.128 4.128 21 C 0.103 3.897 22 O -0.504 6.504 23 C -0.126 4.126 24 H 0.263 0.737 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.429 0.571 30 H 0.140 0.860 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.410 0.590 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -13.258 -1.768 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.178 1.178 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.505 4.505 8 H 0.103 0.897 9 N -0.169 5.169 10 C -0.027 4.027 11 C -0.159 4.159 12 C 0.343 3.657 13 O -0.429 6.429 14 O -0.323 6.323 15 C 0.285 3.715 16 O -0.462 6.462 17 C -0.112 4.112 18 C -0.149 4.149 19 C -0.116 4.116 20 C -0.146 4.146 21 C 0.059 3.941 22 O -0.317 6.317 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.291 0.709 30 H 0.158 0.842 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.269 0.731 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.682 -12.695 -1.208 13.273 hybrid contribution 0.046 1.091 -0.179 1.107 sum -3.636 -11.604 -1.387 12.239 Atomic orbital electron populations 1.69891 1.08025 1.28148 1.42718 1.26046 0.95439 1.02472 0.93584 0.85394 0.78186 0.78074 0.78958 1.17792 1.21279 1.20878 1.19266 0.96683 0.85867 1.48665 0.89695 1.43269 1.46174 1.08800 1.18634 1.21995 0.99520 0.88954 0.92236 1.21607 1.03379 0.93980 0.96891 1.23146 0.75671 0.87964 0.78928 1.90699 1.37720 1.44831 1.69697 1.84534 1.64188 1.46950 1.36658 1.18663 0.83109 0.88145 0.81605 1.90577 1.60405 1.33968 1.61272 1.20143 1.01431 0.95093 0.94488 1.21973 0.98618 0.93793 1.00526 1.21348 0.97756 0.96883 0.95584 1.21802 0.99880 0.99950 0.92999 1.18311 0.99356 0.92383 0.84082 1.84756 1.44589 1.85335 1.17009 1.21408 1.01368 0.97730 0.94092 0.92729 0.91467 0.87759 0.87906 0.87435 0.70950 0.84218 0.81723 0.81752 0.73062 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.14 11.83 21.68 0.26 -49.88 16 2 C 0.03 1.86 4.29 84.96 0.36 2.22 16 3 Si 0.97 44.77 29.61 68.60 2.03 46.80 16 4 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.38 -20.60 9.04 84.10 0.76 -19.84 16 8 H 0.09 4.44 7.92 -2.91 -0.02 4.41 16 9 N -0.45 -22.62 2.53 -638.95 -1.62 -24.24 16 10 C 0.10 3.82 4.15 86.38 0.36 4.17 16 11 C -0.12 -4.13 5.11 29.85 0.15 -3.98 16 12 C 0.50 14.12 8.30 71.24 0.59 14.71 16 13 O -0.54 -17.21 16.74 21.96 0.37 -16.84 16 14 O -0.51 -10.82 13.42 -51.38 -0.69 -11.51 16 15 C 0.49 26.27 6.83 86.76 0.59 26.86 16 16 O -0.58 -36.05 14.46 -4.02 -0.06 -36.11 16 17 C -0.11 -4.58 5.45 -20.10 -0.11 -4.69 16 18 C -0.13 -4.45 7.38 22.55 0.17 -4.28 16 19 C -0.10 -2.50 10.03 22.22 0.22 -2.28 16 20 C -0.13 -3.10 9.98 22.43 0.22 -2.88 16 21 C 0.10 3.08 6.70 22.47 0.15 3.23 16 22 O -0.50 -12.56 13.50 -92.49 -1.25 -13.81 16 23 C -0.13 -4.88 9.55 22.64 0.22 -4.66 16 24 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 26 H 0.10 3.88 3.97 -2.39 -0.01 3.87 16 27 H 0.10 3.61 6.98 -2.39 -0.02 3.59 16 28 H 0.11 4.00 8.07 -2.39 -0.02 3.99 16 29 H 0.43 4.57 9.10 -74.06 -0.67 3.90 16 30 H 0.14 4.66 3.37 -2.91 -0.01 4.65 16 31 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.41 6.02 9.06 -74.06 -0.67 5.35 16 34 H 0.11 4.64 8.01 -2.91 -0.02 4.62 16 Total: -1.00 -77.95 299.22 2.57 -75.39 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.16 Total: 21.63 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 3.69 Total: 8.58 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.36 Total: -74.11 kcal Atomic # 8 Polarization: -76.65 SS G_CDS: -1.63 Total: -78.28 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.95 2.57 -75.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.115 kcal (2) G-P(sol) polarization free energy of solvation -77.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds