Wall clock time and date at job start Fri Apr 10 2020 13:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86794 * 119.99912 * 2 1 4 4 H 1.48505 * 109.47009 * 274.97708 * 3 2 1 5 5 H 1.48502 * 109.47572 * 34.97646 * 3 2 1 6 6 H 1.48499 * 109.47417 * 154.98100 * 3 2 1 7 7 C 1.40135 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00013 * 173.72901 * 7 2 1 9 9 C 1.41769 * 120.00227 * 353.72768 * 7 2 1 10 10 O 1.21776 * 120.00164 * 6.25151 * 9 7 2 11 11 N 1.34776 * 120.00112 * 186.24976 * 9 7 2 12 12 C 1.39517 * 120.00134 * 185.13300 * 11 9 7 13 13 C 1.39101 * 120.02565 * 33.22087 * 12 11 9 14 14 C 1.37969 * 119.96560 * 180.29695 * 13 12 11 15 15 C 1.38858 * 120.03249 * 359.47353 * 14 13 12 16 16 O 1.35902 * 119.97597 * 180.22890 * 15 14 13 17 17 C 1.42906 * 117.00037 * 0.27796 * 16 15 14 18 18 C 1.52990 * 109.47477 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47357 * 180.02562 * 18 17 16 20 20 O 1.20824 * 119.99879 * 359.97438 * 19 18 17 21 21 O 1.34229 * 120.00149 * 180.02562 * 19 18 17 22 22 C 1.38866 * 120.05781 * 0.50755 * 15 14 13 23 23 C 1.37968 * 120.02795 * 359.76730 * 22 15 14 24 24 H 0.97000 * 120.00223 * 0.02562 * 1 2 3 25 25 H 0.97004 * 119.99868 * 5.13561 * 11 9 7 26 26 H 1.07996 * 120.01741 * 0.03190 * 13 12 11 27 27 H 1.07999 * 119.98198 * 179.70102 * 14 13 12 28 28 H 1.09001 * 109.46782 * 300.00223 * 17 16 15 29 29 H 1.09007 * 109.46846 * 59.99689 * 17 16 15 30 30 H 1.09001 * 109.47636 * 300.00115 * 18 17 16 31 31 H 1.09007 * 109.46997 * 60.00197 * 18 17 16 32 32 H 0.96706 * 116.99966 * 180.02562 * 21 19 18 33 33 H 1.07995 * 119.98988 * 179.74349 * 22 15 14 34 34 H 1.07996 * 120.01894 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3825 2.1071 -1.3948 5 1 1.4943 2.6201 0.8026 6 1 3.5865 1.4121 0.5921 7 6 2.0069 -1.2136 0.0005 8 1 3.0822 -1.2165 -0.1016 9 6 1.3045 -2.4377 0.1352 10 8 0.0867 -2.4440 0.1360 11 7 1.9844 -3.5944 0.2624 12 6 1.2973 -4.8084 0.2872 13 6 0.1320 -4.9640 -0.4563 14 6 -0.5498 -6.1630 -0.4260 15 6 -0.0674 -7.2177 0.3376 16 8 -0.7375 -8.3998 0.3629 17 6 -1.9268 -8.4884 -0.4245 18 6 -2.5374 -9.8828 -0.2710 19 6 -3.7912 -9.9764 -1.1018 20 8 -4.1589 -9.0253 -1.7499 21 8 -4.5000 -11.1161 -1.1211 22 6 1.0959 -7.0638 1.0800 23 6 1.7767 -5.8640 1.0560 24 1 -0.4850 0.8400 -0.0004 25 1 2.9515 -3.5828 0.3367 26 1 -0.2411 -4.1452 -1.0536 27 1 -1.4572 -6.2825 -0.9994 28 1 -2.6425 -7.7387 -0.0872 29 1 -1.6828 -8.3123 -1.4722 30 1 -1.8215 -10.6322 -0.6085 31 1 -2.7813 -10.0592 0.7767 32 1 -5.2967 -11.1284 -1.6691 33 1 1.4679 -7.8835 1.6768 34 1 2.6812 -5.7444 1.6338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:42 Heat of formation + Delta-G solvation = -170.215731 kcal Electronic energy + Delta-G solvation = -20376.750514 eV Core-core repulsion = 16852.773397 eV Total energy + Delta-G solvation = -3523.977117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48455 -41.06999 -39.94289 -38.00562 -37.18630 -35.13322 -34.41183 -33.18545 -31.86509 -30.03482 -28.10910 -26.24990 -24.04542 -23.23985 -21.81016 -21.61162 -19.52000 -19.43452 -18.89705 -17.83222 -17.64816 -17.62236 -17.13735 -16.63520 -16.42601 -15.83039 -15.37042 -14.99621 -14.67795 -14.51954 -14.23303 -14.14343 -14.02942 -13.51509 -13.14357 -13.03058 -12.77720 -12.74337 -12.67250 -12.59857 -12.04167 -11.94560 -11.77337 -11.71909 -11.00650 -10.47068 -10.01301 -9.75542 -8.41817 -8.39528 -7.00436 0.43844 0.55642 1.13211 1.39188 1.40011 1.57181 1.62700 2.21037 2.36185 2.68131 2.88699 3.05424 3.57637 3.65177 3.87098 3.96736 3.99562 4.26293 4.38993 4.47937 4.53939 4.64311 4.71403 4.76265 5.07874 5.17886 5.22481 5.46391 5.55030 5.56984 5.69702 5.89943 6.20071 6.29951 6.53933 6.73904 6.92790 7.43516 8.39446 8.57544 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.032917 B = 0.003063 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.430639 B = 9138.039265 C = 9886.462365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.030 3.970 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.529 3.471 10 O -0.618 6.618 11 N -0.695 5.695 12 C 0.128 3.872 13 C -0.121 4.121 14 C -0.187 4.187 15 C 0.087 3.913 16 O -0.311 6.311 17 C 0.065 3.935 18 C -0.104 4.104 19 C 0.494 3.506 20 O -0.557 6.557 21 O -0.506 6.506 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.278 0.722 25 H 0.407 0.593 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.431 0.569 33 H 0.165 0.835 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -19.582 0.725 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.168 1.168 7 C -0.602 4.602 8 H 0.110 0.890 9 C 0.339 3.661 10 O -0.505 6.505 11 N -0.341 5.341 12 C 0.031 3.969 13 C -0.142 4.142 14 C -0.207 4.207 15 C 0.041 3.959 16 O -0.225 6.225 17 C -0.011 4.011 18 C -0.141 4.141 19 C 0.338 3.662 20 O -0.449 6.449 21 O -0.320 6.320 22 C -0.136 4.136 23 C -0.146 4.146 24 H 0.089 0.911 25 H 0.242 0.758 26 H 0.113 0.887 27 H 0.146 0.854 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.293 0.707 33 H 0.182 0.818 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.230 -19.349 0.870 19.408 hybrid contribution -0.409 1.294 -0.801 1.576 sum -1.639 -18.055 0.069 18.130 Atomic orbital electron populations 1.70177 1.09804 1.29461 1.33699 1.27065 0.95470 1.05290 0.90941 0.84939 0.79026 0.74628 0.79325 1.18627 1.19642 1.16830 1.20591 0.96093 0.90849 1.52622 0.89000 1.17429 0.87207 0.83852 0.77653 1.90612 1.15678 1.86879 1.57344 1.43646 1.10044 1.03845 1.76517 1.18199 0.94843 0.87485 0.96359 1.20942 0.96918 0.96686 0.99672 1.21139 1.02066 0.93405 1.04053 1.18872 0.93956 0.84674 0.98390 1.85861 1.38318 1.31528 1.66833 1.22439 0.85432 0.97748 0.95494 1.21028 0.92523 0.97527 1.02999 1.23211 0.84826 0.79476 0.78718 1.90792 1.70525 1.39839 1.43718 1.84461 1.41944 1.37635 1.67955 1.20435 0.93526 0.98518 1.01124 1.21008 1.02582 0.92061 0.98977 0.91143 0.75783 0.88658 0.85428 0.92459 0.91803 0.83941 0.84278 0.70660 0.81787 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.46 11.76 21.85 0.26 -48.20 16 2 C 0.03 1.66 5.49 85.33 0.47 2.13 16 3 Si 1.00 39.81 29.56 68.60 2.03 41.83 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.57 -31.57 9.31 23.60 0.22 -31.35 16 8 H 0.09 4.52 7.86 -2.91 -0.02 4.50 16 9 C 0.53 30.83 7.30 85.11 0.62 31.45 16 10 O -0.62 -41.32 12.57 -4.59 -0.06 -41.38 16 11 N -0.70 -32.37 5.31 -311.32 -1.65 -34.02 16 12 C 0.13 5.55 6.28 38.34 0.24 5.79 16 13 C -0.12 -5.61 8.65 22.41 0.19 -5.42 16 14 C -0.19 -7.15 9.03 22.35 0.20 -6.95 16 15 C 0.09 2.78 6.69 22.57 0.15 2.93 16 16 O -0.31 -8.12 10.13 -92.45 -0.94 -9.06 16 17 C 0.06 1.46 4.03 71.98 0.29 1.75 16 18 C -0.10 -1.45 6.18 29.84 0.18 -1.26 16 19 C 0.49 8.31 8.33 71.24 0.59 8.90 16 20 O -0.56 -14.40 16.74 21.97 0.37 -14.03 16 21 O -0.51 -5.40 13.42 -51.41 -0.69 -6.09 16 22 C -0.12 -3.41 9.98 22.36 0.22 -3.19 16 23 C -0.13 -4.12 9.96 22.42 0.22 -3.89 16 24 H 0.28 15.12 8.29 -92.71 -0.77 14.36 16 25 H 0.41 15.69 8.77 -92.71 -0.81 14.88 16 26 H 0.10 5.25 6.39 -2.91 -0.02 5.24 16 27 H 0.13 4.54 6.29 -2.91 -0.02 4.52 16 28 H 0.06 1.47 7.60 -2.39 -0.02 1.45 16 29 H 0.06 1.54 7.63 -2.38 -0.02 1.52 16 30 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.43 1.32 9.10 -74.05 -0.67 0.64 16 33 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -82.58 306.38 2.61 -79.97 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.32 Total: 30.10 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 3.61 Total: 0.89 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.40 Total: -82.23 kcal Atomic # 8 Polarization: -69.25 SS G_CDS: -1.32 Total: -70.57 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Total: -82.58 2.61 -79.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.247 kcal (2) G-P(sol) polarization free energy of solvation -82.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds