Wall clock time and date at job start Fri Apr 10 2020 14:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47315 * 269.99457 * 3 2 1 5 5 H 1.48495 * 109.47316 * 29.99971 * 3 2 1 6 6 H 1.48505 * 109.47143 * 149.99889 * 3 2 1 7 7 C 1.37873 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47114 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99857 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.35222 * 126.41920 * 270.00281 * 13 12 11 15 15 Cl 1.73593 * 125.70049 * 359.97438 * 14 13 12 16 16 N 1.33548 * 108.60310 * 179.97438 * 14 13 12 17 17 C 1.32597 * 109.17230 * 359.97438 * 16 14 13 18 18 C 1.40913 * 132.30618 * 180.02562 * 17 16 14 19 19 C 1.36038 * 119.33172 * 179.97438 * 18 17 16 20 20 C 1.40465 * 119.68689 * 359.97438 * 19 18 17 21 21 C 1.34960 * 120.29377 * 359.97395 * 20 19 18 22 22 N 1.36464 * 120.61465 * 0.04383 * 21 20 19 23 23 H 0.96996 * 119.99368 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46696 * 60.00307 * 9 7 2 25 25 H 1.08999 * 109.47201 * 300.00192 * 9 7 2 26 26 H 1.08995 * 109.47550 * 60.00283 * 10 9 7 27 27 H 1.09003 * 109.47443 * 300.00158 * 10 9 7 28 28 H 1.00891 * 110.99988 * 303.94993 * 11 10 9 29 29 H 1.08995 * 109.47647 * 59.99895 * 12 11 10 30 30 H 1.09000 * 109.46922 * 299.99640 * 12 11 10 31 31 H 1.08002 * 120.33467 * 359.97438 * 18 17 16 32 32 H 1.07996 * 120.15916 * 180.25151 * 19 18 17 33 33 H 1.08003 * 119.85049 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.69520 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5106 -4.9343 0.0033 12 6 2.4351 -6.0759 0.0049 13 6 1.6471 -7.3604 0.0047 14 6 1.2261 -8.0441 1.0928 15 17 1.5035 -7.5892 2.7449 16 7 0.5612 -9.1278 0.6840 17 6 0.5455 -9.1548 -0.6416 18 6 -0.0112 -10.0618 -1.5652 19 6 0.1325 -9.8284 -2.8977 20 6 0.8309 -8.6901 -3.3332 21 6 1.3575 -7.8300 -2.4364 22 7 1.2210 -8.0525 -1.0970 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8718 -3.6037 0.8926 27 1 2.8719 -3.6052 -0.8873 28 1 0.8741 -4.9839 0.7844 29 1 3.0625 -6.0343 0.8952 30 1 3.0637 -6.0357 -0.8847 31 1 -0.5465 -10.9335 -1.2188 32 1 -0.2922 -10.5126 -3.6173 33 1 0.9469 -8.5025 -4.3905 34 1 1.8923 -6.9576 -2.7820 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273060732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:37 Heat of formation + Delta-G solvation = 76.056762 kcal Electronic energy + Delta-G solvation = -18447.320944 eV Core-core repulsion = 15407.024919 eV Total energy + Delta-G solvation = -3040.296025 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.02169 -37.79848 -36.49238 -36.16417 -33.92011 -32.94150 -30.73213 -30.14870 -28.40168 -25.54445 -23.82972 -23.33693 -22.66543 -21.10144 -20.61269 -17.67387 -17.14554 -16.45780 -16.25470 -16.14035 -15.37343 -14.85873 -14.47821 -14.41006 -14.11587 -13.79914 -12.84644 -12.81328 -12.55825 -12.37009 -12.16317 -11.76779 -11.36541 -11.27093 -11.19011 -11.11510 -10.94908 -10.58647 -10.22212 -10.07107 -9.48217 -9.20309 -8.83430 -8.38513 -8.10106 -7.85957 -6.02217 -4.05352 0.54233 1.01325 1.66548 2.48220 2.55528 3.30315 3.30346 3.36725 3.39647 4.02094 4.38083 4.42097 4.50102 4.68933 4.73404 4.82394 5.02548 5.23549 5.30888 5.33844 5.57549 5.70913 5.86560 5.91996 6.09013 6.22323 6.24750 6.31855 6.79811 6.89438 7.32733 7.50714 7.66833 7.72275 7.85757 8.03072 8.38899 9.01771 9.58706 11.09156 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003790 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.730212 B = 7386.571298 C = 8304.587035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.688 5.688 12 C 0.132 3.868 13 C -0.025 4.025 14 C 0.108 3.892 15 Cl 0.002 6.998 16 N -0.485 5.485 17 C 0.236 3.764 18 C -0.085 4.085 19 C -0.094 4.094 20 C -0.149 4.149 21 C 0.077 3.923 22 N -0.347 5.347 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.015 0.985 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.342 0.658 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -20.479 -5.010 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.320 5.320 12 C 0.001 3.999 13 C -0.140 4.140 14 C -0.051 4.051 15 Cl 0.030 6.970 16 N -0.207 5.207 17 C -0.008 4.008 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.169 4.169 21 C -0.045 4.045 22 N -0.019 5.019 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.276 -20.827 -4.986 21.536 hybrid contribution 1.043 1.619 0.594 2.015 sum 3.319 -19.208 -4.393 19.981 Atomic orbital electron populations 1.69977 1.06052 1.26646 1.50473 1.25002 0.94836 0.99240 0.95242 0.86582 0.79809 0.83424 0.78104 1.20639 1.21197 1.19889 1.21152 0.92973 0.90924 1.51108 0.92703 1.19065 0.93982 0.90307 0.97824 1.22204 0.97110 0.87941 0.98922 1.60722 1.19327 1.01526 1.50401 1.20282 0.92735 0.84748 1.02089 1.20722 1.10078 0.99535 0.83663 1.20529 1.02510 0.94764 0.87334 1.98383 1.94581 1.90512 1.13480 1.70376 1.22352 1.21134 1.06831 1.20676 1.00009 0.90300 0.89821 1.20226 1.00735 0.98695 0.90834 1.21065 0.98112 0.97412 0.95198 1.20846 1.00703 0.95182 1.00192 1.21749 1.01440 1.01403 0.79949 1.42516 1.35112 1.18491 1.05772 0.92949 0.95698 0.96675 0.96135 0.92208 0.84010 0.92427 0.90228 0.83069 0.83864 0.82927 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.34 5.62 -3.82 -0.02 1.32 16 11 N -0.69 -12.12 6.49 -115.06 -0.75 -12.87 16 12 C 0.13 1.91 5.94 -4.98 -0.03 1.88 16 13 C -0.02 -0.36 6.55 -81.40 -0.53 -0.90 16 14 C 0.11 1.67 7.67 -17.88 -0.14 1.54 16 15 Cl 0.00 0.03 28.87 -51.86 -1.50 -1.47 16 16 N -0.49 -7.72 11.32 -9.91 -0.11 -7.84 16 17 C 0.24 3.24 7.81 -156.03 -1.22 2.03 16 18 C -0.08 -0.83 10.11 -39.36 -0.40 -1.23 16 19 C -0.09 -0.70 10.07 -39.53 -0.40 -1.09 16 20 C -0.15 -1.15 9.99 -39.91 -0.40 -1.54 16 21 C 0.08 0.80 10.85 -16.65 -0.18 0.61 16 22 N -0.35 -4.66 2.95 -58.42 -0.17 -4.83 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.34 6.22 8.72 -39.30 -0.34 5.88 16 29 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 34 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -32.55 313.79 -10.06 -42.61 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.10 Total: -0.43 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -3.87 Total: -10.29 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.29 Total: -51.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.50 Total: -1.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.55 -10.06 -42.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273060732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.664 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds