Wall clock time and date at job start Fri Apr 10 2020 14:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47315 * 269.99457 * 3 2 1 5 5 H 1.48495 * 109.47316 * 29.99971 * 3 2 1 6 6 H 1.48505 * 109.47143 * 149.99889 * 3 2 1 7 7 C 1.37873 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47114 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99857 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.35222 * 126.41920 * 270.00281 * 13 12 11 15 15 Cl 1.73593 * 125.70049 * 359.97438 * 14 13 12 16 16 N 1.33548 * 108.60310 * 179.97438 * 14 13 12 17 17 C 1.32597 * 109.17230 * 359.97438 * 16 14 13 18 18 C 1.40913 * 132.30618 * 180.02562 * 17 16 14 19 19 C 1.36038 * 119.33172 * 179.97438 * 18 17 16 20 20 C 1.40465 * 119.68689 * 359.97438 * 19 18 17 21 21 C 1.34960 * 120.29377 * 359.97395 * 20 19 18 22 22 N 1.36464 * 120.61465 * 0.04383 * 21 20 19 23 23 H 0.96996 * 119.99368 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46696 * 60.00307 * 9 7 2 25 25 H 1.08999 * 109.47201 * 300.00192 * 9 7 2 26 26 H 1.08995 * 109.47550 * 60.00283 * 10 9 7 27 27 H 1.09003 * 109.47443 * 300.00158 * 10 9 7 28 28 H 1.00891 * 110.99988 * 303.94993 * 11 10 9 29 29 H 1.08995 * 109.47647 * 59.99895 * 12 11 10 30 30 H 1.09000 * 109.46922 * 299.99640 * 12 11 10 31 31 H 1.08002 * 120.33467 * 359.97438 * 18 17 16 32 32 H 1.07996 * 120.15916 * 180.25151 * 19 18 17 33 33 H 1.08003 * 119.85049 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.69520 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5106 -4.9343 0.0033 12 6 2.4351 -6.0759 0.0049 13 6 1.6471 -7.3604 0.0047 14 6 1.2261 -8.0441 1.0928 15 17 1.5035 -7.5892 2.7449 16 7 0.5612 -9.1278 0.6840 17 6 0.5455 -9.1548 -0.6416 18 6 -0.0112 -10.0618 -1.5652 19 6 0.1325 -9.8284 -2.8977 20 6 0.8309 -8.6901 -3.3332 21 6 1.3575 -7.8300 -2.4364 22 7 1.2210 -8.0525 -1.0970 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8718 -3.6037 0.8926 27 1 2.8719 -3.6052 -0.8873 28 1 0.8741 -4.9839 0.7844 29 1 3.0625 -6.0343 0.8952 30 1 3.0637 -6.0357 -0.8847 31 1 -0.5465 -10.9335 -1.2188 32 1 -0.2922 -10.5126 -3.6173 33 1 0.9469 -8.5025 -4.3905 34 1 1.8923 -6.9576 -2.7820 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273060732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:37 Heat of formation + Delta-G solvation = 55.510989 kcal Electronic energy + Delta-G solvation = -18448.211876 eV Core-core repulsion = 15407.024919 eV Total energy + Delta-G solvation = -3041.186956 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.96103 -38.68783 -37.63362 -37.50388 -35.29396 -34.53798 -32.22293 -31.05714 -29.81254 -27.00292 -25.19088 -24.47552 -23.59702 -22.49174 -22.04292 -18.67390 -18.49376 -17.96489 -17.26764 -17.07505 -16.64698 -16.44488 -15.74456 -15.48309 -15.32497 -15.19135 -14.27794 -14.07023 -13.81879 -13.72144 -13.34376 -13.00867 -12.83690 -12.60287 -12.46994 -12.38410 -12.22834 -12.01757 -11.96233 -11.45911 -11.33200 -11.21948 -10.56573 -9.77905 -9.45275 -8.87203 -8.20057 -6.31816 -0.21956 0.14533 0.61997 1.41229 1.42742 1.48656 1.53810 1.63127 2.40914 2.50789 3.12240 3.13800 3.35330 3.61003 3.70230 3.84537 4.00941 4.17102 4.34148 4.43247 4.54212 4.61326 4.65065 4.88169 5.05431 5.12945 5.14705 5.25251 5.43249 5.53957 5.64750 5.75400 5.93398 6.06402 6.18330 6.35317 6.52817 6.85699 7.37852 8.92143 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003790 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.730212 B = 7386.571298 C = 8304.587035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.085 3.915 11 N -0.691 5.691 12 C 0.141 3.859 13 C -0.045 4.045 14 C 0.093 3.907 15 Cl -0.001 7.001 16 N -0.526 5.526 17 C 0.225 3.775 18 C -0.108 4.108 19 C -0.068 4.068 20 C -0.128 4.128 21 C 0.044 3.956 22 N -0.351 5.351 23 H 0.263 0.737 24 H -0.005 1.005 25 H -0.013 1.013 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.336 0.664 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.169 0.831 32 H 0.188 0.812 33 H 0.193 0.807 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -21.192 -7.266 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.006 4.006 10 C -0.043 4.043 11 N -0.322 5.322 12 C 0.011 3.989 13 C -0.161 4.161 14 C -0.066 4.066 15 Cl 0.028 6.972 16 N -0.249 5.249 17 C -0.018 4.018 18 C -0.128 4.128 19 C -0.092 4.092 20 C -0.148 4.148 21 C -0.078 4.078 22 N -0.022 5.022 23 H 0.072 0.928 24 H 0.013 0.987 25 H 0.005 0.995 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.186 0.814 32 H 0.205 0.795 33 H 0.210 0.790 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.245 -21.556 -7.257 22.975 hybrid contribution 0.666 1.700 1.131 2.148 sum 3.912 -19.856 -6.126 21.144 Atomic orbital electron populations 1.70121 1.07921 1.27776 1.51506 1.25983 0.95717 1.03429 0.94640 0.85417 0.78623 0.78265 0.78551 1.19613 1.20976 1.18607 1.21610 0.93653 0.92036 1.50798 0.91773 1.18916 0.94328 0.92386 0.94961 1.21821 0.95594 0.87356 0.99545 1.60634 1.19818 1.01538 1.50236 1.20222 0.92161 0.83453 1.03033 1.20578 1.11444 0.99877 0.84183 1.20713 1.03074 0.95281 0.87559 1.98363 1.94623 1.90542 1.13711 1.70314 1.24135 1.22021 1.08407 1.21332 0.99768 0.90950 0.89799 1.20643 1.01711 0.99027 0.91403 1.21645 0.95575 0.97156 0.94817 1.21456 0.97950 0.93812 1.01599 1.22286 1.03257 1.03113 0.79118 1.42642 1.34843 1.18168 1.06543 0.92801 0.98697 0.99472 0.95713 0.91204 0.84683 0.91979 0.88605 0.81374 0.79479 0.79006 0.80532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.40 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.68 5.23 29.85 0.16 1.83 16 10 C 0.09 3.47 5.62 86.30 0.49 3.95 16 11 N -0.69 -24.66 6.49 -517.94 -3.36 -28.02 16 12 C 0.14 4.05 5.94 85.56 0.51 4.56 16 13 C -0.05 -1.35 6.55 41.07 0.27 -1.08 16 14 C 0.09 2.98 7.67 83.74 0.64 3.62 16 15 Cl 0.00 -0.02 28.87 -2.72 -0.08 -0.10 16 16 N -0.53 -17.18 11.32 -185.28 -2.10 -19.28 16 17 C 0.23 6.11 7.81 134.09 1.05 7.16 16 18 C -0.11 -1.89 10.11 22.41 0.23 -1.66 16 19 C -0.07 -0.72 10.07 22.30 0.22 -0.49 16 20 C -0.13 -1.46 9.99 22.06 0.22 -1.24 16 21 C 0.04 0.82 10.85 83.22 0.90 1.72 16 22 N -0.35 -9.21 2.95 -338.74 -1.00 -10.21 16 23 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 24 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.34 12.68 8.72 -89.70 -0.78 11.89 16 29 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 30 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.19 0.38 8.06 -2.91 -0.02 0.35 16 33 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -72.99 313.79 1.49 -71.50 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.34 Total: 8.61 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 5.38 Total: -11.56 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -6.17 Total: -114.42 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -72.99 1.49 -71.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273060732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.008 kcal (2) G-P(sol) polarization free energy of solvation -72.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds