Wall clock time and date at job start Fri Apr 10 2020 13:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00276 * 2 1 4 4 H 1.48503 * 109.47149 * 270.00374 * 3 2 1 5 5 H 1.48503 * 109.46988 * 29.99559 * 3 2 1 6 6 H 1.48493 * 109.47410 * 150.00095 * 3 2 1 7 7 C 1.38795 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99805 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00023 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47225 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99761 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00473 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00150 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46944 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.67598 * 308.23099 * 15 14 13 17 17 C 1.54890 * 110.75899 * 71.66922 * 15 14 13 18 18 C 1.54373 * 104.19744 * 156.28089 * 17 15 14 19 19 C 1.53873 * 106.54666 * 336.35692 * 18 17 15 20 20 F 1.39905 * 110.03081 * 240.72560 * 19 18 17 21 21 F 1.39898 * 110.03400 * 119.34538 * 19 18 17 22 22 C 1.54260 * 106.63986 * 0.03272 * 19 18 17 23 23 H 0.97002 * 120.00048 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47602 * 60.00406 * 10 9 7 25 25 H 1.09005 * 109.47474 * 300.00023 * 10 9 7 26 26 H 0.97002 * 119.99868 * 359.97438 * 13 11 10 27 27 H 1.09001 * 109.47521 * 60.00023 * 14 13 11 28 28 H 1.08999 * 109.47065 * 299.99455 * 14 13 11 29 29 H 1.09002 * 110.48579 * 274.93525 * 17 15 14 30 30 H 1.09003 * 110.48649 * 37.44837 * 17 15 14 31 31 H 1.09002 * 110.05153 * 217.08799 * 18 17 15 32 32 H 1.09003 * 110.06822 * 95.62477 * 18 17 15 33 33 H 1.09008 * 110.48935 * 142.26469 * 22 19 18 34 34 H 1.08998 * 110.49231 * 264.90858 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0018 14 6 2.3302 -7.7151 -0.0030 15 6 3.5023 -8.6986 -0.0029 16 1 4.2033 -8.4620 -0.8034 17 6 4.2147 -8.7034 1.3724 18 6 4.9050 -10.0827 1.4364 19 6 4.1287 -11.0060 0.4811 20 9 3.5899 -12.0851 1.1901 21 9 4.9766 -11.4723 -0.5292 22 6 2.9954 -10.1567 -0.1303 23 1 -0.4850 0.8401 0.0004 24 1 3.1244 -3.7314 0.8894 25 1 3.1244 -3.7314 -0.8905 26 1 3.8008 -6.1836 -0.0022 27 1 1.7218 -7.8745 -0.8932 28 1 1.7215 -7.8759 0.8868 29 1 4.9545 -7.9043 1.4216 30 1 3.4885 -8.5999 2.1787 31 1 4.8621 -10.4753 2.4524 32 1 5.9422 -9.9973 1.1123 33 1 2.8452 -10.4181 -1.1778 34 1 2.0720 -10.2901 0.4333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431090475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:38 Heat of formation + Delta-G solvation = -159.530370 kcal Electronic energy + Delta-G solvation = -18899.535507 eV Core-core repulsion = 15400.378177 eV Total energy + Delta-G solvation = -3499.157329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.24506 -47.31599 -39.45706 -37.95176 -34.23129 -32.44568 -30.69163 -29.34931 -28.15209 -25.54245 -24.61221 -21.46197 -20.94098 -20.29053 -18.05418 -17.80276 -17.14948 -16.64448 -16.24532 -15.65482 -15.29252 -14.82840 -14.80457 -14.63862 -14.04699 -13.92952 -13.80494 -13.65257 -13.18557 -12.93869 -12.65166 -12.32790 -12.13982 -11.87096 -11.81543 -11.30013 -11.13213 -11.08192 -11.07701 -11.03999 -10.77335 -9.83528 -9.45266 -9.08899 -8.94441 -8.25816 -6.52109 -6.23379 -3.94184 2.96133 3.05880 3.21140 3.25323 3.29205 3.37185 3.49269 3.64814 3.84815 3.96270 4.18784 4.50832 4.57654 4.71577 4.79933 4.88217 4.97139 5.11860 5.15749 5.19998 5.35310 5.43580 5.52275 5.56989 5.63708 5.73855 5.85947 5.89042 6.11011 6.54562 7.57766 7.64840 8.33427 8.56786 9.21968 10.84061 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.052205 B = 0.002736 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.220307 B =10231.121810 C =10508.300115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.131 3.869 15 C -0.103 4.103 16 H 0.094 0.906 17 C -0.119 4.119 18 C -0.164 4.164 19 C 0.281 3.719 20 F -0.200 7.200 21 F -0.199 7.199 22 C -0.154 4.154 23 H 0.269 0.731 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.398 0.602 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 -20.177 1.518 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.394 5.394 14 C 0.006 3.994 15 C -0.122 4.122 16 H 0.112 0.888 17 C -0.156 4.156 18 C -0.202 4.202 19 C 0.245 3.755 20 F -0.181 7.181 21 F -0.180 7.180 22 C -0.193 4.193 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.232 0.768 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.142 -20.453 1.519 22.454 hybrid contribution 2.519 1.075 -0.061 2.739 sum 11.661 -19.377 1.458 22.663 Atomic orbital electron populations 1.70018 1.05959 1.27481 1.46822 1.24996 0.95034 0.99052 0.94523 0.86161 0.79398 0.81541 0.78354 1.20268 1.20748 1.19693 1.22864 0.94901 0.91644 1.58999 0.90921 1.85409 1.04916 0.96351 1.96722 1.23530 1.06595 0.95360 1.04935 1.20320 0.86513 0.86289 0.75115 1.90712 1.15376 1.85610 1.47407 1.45963 1.09953 1.05327 1.78110 1.21217 0.94841 0.80465 1.02844 1.22350 0.97811 0.93374 0.98688 0.88784 1.22487 1.00134 0.95653 0.97342 1.23204 1.00890 0.95715 1.00379 1.21831 0.88261 0.82659 0.82786 1.93022 1.86815 1.59232 1.79032 1.93021 1.72616 1.90330 1.62057 1.23329 0.97874 0.94236 1.03825 0.92163 0.89202 0.89210 0.76811 0.91183 0.91140 0.89857 0.89909 0.88624 0.88678 0.88453 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.46 7.85 -10.99 -0.09 9.38 16 12 O -0.52 -11.42 15.86 5.55 0.09 -11.33 16 13 N -0.74 -8.86 5.48 -60.29 -0.33 -9.19 16 14 C 0.13 1.31 5.11 -4.04 -0.02 1.29 16 15 C -0.10 -0.71 2.91 -88.62 -0.26 -0.97 16 16 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.12 -0.72 6.20 -25.02 -0.16 -0.87 16 18 C -0.16 -1.01 6.51 -25.56 -0.17 -1.17 16 19 C 0.28 2.25 2.57 -25.62 -0.07 2.19 16 20 F -0.20 -1.95 17.04 2.25 0.04 -1.91 16 21 F -0.20 -1.92 17.04 2.25 0.04 -1.88 16 22 C -0.15 -1.07 5.85 -25.07 -0.15 -1.21 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 25 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 26 H 0.40 3.57 8.47 -40.82 -0.35 3.22 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.54 7.93 -51.93 -0.41 0.12 16 31 H 0.10 0.54 8.02 -51.93 -0.42 0.12 16 32 H 0.09 0.52 8.02 -51.93 -0.42 0.10 16 33 H 0.10 0.63 8.11 -51.92 -0.42 0.21 16 34 H 0.10 0.68 8.02 -51.93 -0.42 0.27 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -34.16 311.62 -6.95 -41.11 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.50 Total: -1.60 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.48 Total: -6.97 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.40 Total: -34.44 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.08 Total: -3.79 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.16 -6.95 -41.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431090475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.424 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds