Wall clock time and date at job start Fri Apr 10 2020 13:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00276 * 2 1 4 4 H 1.48503 * 109.47149 * 270.00374 * 3 2 1 5 5 H 1.48503 * 109.46988 * 29.99559 * 3 2 1 6 6 H 1.48493 * 109.47410 * 150.00095 * 3 2 1 7 7 C 1.38795 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99805 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00023 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47225 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99761 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00473 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00150 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46944 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.67598 * 308.23099 * 15 14 13 17 17 C 1.54890 * 110.75899 * 71.66922 * 15 14 13 18 18 C 1.54373 * 104.19744 * 156.28089 * 17 15 14 19 19 C 1.53873 * 106.54666 * 336.35692 * 18 17 15 20 20 F 1.39905 * 110.03081 * 240.72560 * 19 18 17 21 21 F 1.39898 * 110.03400 * 119.34538 * 19 18 17 22 22 C 1.54260 * 106.63986 * 0.03272 * 19 18 17 23 23 H 0.97002 * 120.00048 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47602 * 60.00406 * 10 9 7 25 25 H 1.09005 * 109.47474 * 300.00023 * 10 9 7 26 26 H 0.97002 * 119.99868 * 359.97438 * 13 11 10 27 27 H 1.09001 * 109.47521 * 60.00023 * 14 13 11 28 28 H 1.08999 * 109.47065 * 299.99455 * 14 13 11 29 29 H 1.09002 * 110.48579 * 274.93525 * 17 15 14 30 30 H 1.09003 * 110.48649 * 37.44837 * 17 15 14 31 31 H 1.09002 * 110.05153 * 217.08799 * 18 17 15 32 32 H 1.09003 * 110.06822 * 95.62477 * 18 17 15 33 33 H 1.09008 * 110.48935 * 142.26469 * 22 19 18 34 34 H 1.08998 * 110.49231 * 264.90858 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0018 14 6 2.3302 -7.7151 -0.0030 15 6 3.5023 -8.6986 -0.0029 16 1 4.2033 -8.4620 -0.8034 17 6 4.2147 -8.7034 1.3724 18 6 4.9050 -10.0827 1.4364 19 6 4.1287 -11.0060 0.4811 20 9 3.5899 -12.0851 1.1901 21 9 4.9766 -11.4723 -0.5292 22 6 2.9954 -10.1567 -0.1303 23 1 -0.4850 0.8401 0.0004 24 1 3.1244 -3.7314 0.8894 25 1 3.1244 -3.7314 -0.8905 26 1 3.8008 -6.1836 -0.0022 27 1 1.7218 -7.8745 -0.8932 28 1 1.7215 -7.8759 0.8868 29 1 4.9545 -7.9043 1.4216 30 1 3.4885 -8.5999 2.1787 31 1 4.8621 -10.4753 2.4524 32 1 5.9422 -9.9973 1.1123 33 1 2.8452 -10.4181 -1.1778 34 1 2.0720 -10.2901 0.4333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431090475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:38 Heat of formation + Delta-G solvation = -182.448024 kcal Electronic energy + Delta-G solvation = -18900.529291 eV Core-core repulsion = 15400.378177 eV Total energy + Delta-G solvation = -3500.151113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.92232 -48.01082 -40.68911 -38.75751 -35.35992 -34.57005 -31.77399 -30.23714 -29.01460 -27.65096 -25.45413 -22.18501 -21.62813 -21.44615 -19.80674 -18.63853 -17.91078 -17.70974 -17.36010 -16.86794 -16.71299 -16.48929 -15.80783 -15.40361 -15.32843 -14.90792 -14.64351 -14.49414 -14.38885 -14.33542 -13.83337 -13.30556 -13.15070 -13.02377 -12.87935 -12.61685 -12.60601 -12.36781 -11.97441 -11.74443 -11.67785 -11.62850 -11.13085 -10.93750 -10.25420 -10.09088 -8.65097 -8.33500 -6.11345 1.28789 1.43674 1.48875 1.58954 1.64349 2.25157 2.30139 2.79110 2.96389 3.00819 3.17895 3.35015 3.38357 3.90532 3.96020 4.01707 4.18271 4.28187 4.32983 4.35425 4.39536 4.54532 4.63115 4.78858 4.81364 4.92126 5.05176 5.13449 5.26542 5.43270 5.46376 6.21135 6.53636 7.08028 7.27795 8.75694 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.052205 B = 0.002736 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.220307 B =10231.121810 C =10508.300115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.130 3.870 15 C -0.091 4.091 16 H 0.108 0.892 17 C -0.117 4.117 18 C -0.158 4.158 19 C 0.272 3.728 20 F -0.213 7.213 21 F -0.209 7.209 22 C -0.153 4.153 23 H 0.271 0.729 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.418 0.582 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.009 -20.232 1.646 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.364 5.364 14 C 0.006 3.994 15 C -0.110 4.110 16 H 0.126 0.874 17 C -0.154 4.154 18 C -0.196 4.196 19 C 0.236 3.764 20 F -0.194 7.194 21 F -0.191 7.191 22 C -0.192 4.192 23 H 0.080 0.920 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.255 0.745 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.895 -20.550 1.647 23.802 hybrid contribution 1.720 0.929 -0.107 1.958 sum 13.616 -19.621 1.540 23.932 Atomic orbital electron populations 1.70187 1.07997 1.28582 1.48093 1.26133 0.95958 1.03359 0.93792 0.84948 0.78229 0.76019 0.78754 1.19380 1.20433 1.18078 1.23210 0.95373 0.91986 1.58730 0.89808 1.85601 1.10775 0.99343 1.97056 1.23377 1.03454 0.94341 1.06921 1.20054 0.86217 0.86717 0.75123 1.90703 1.17543 1.86133 1.50222 1.45668 1.10330 1.04904 1.75484 1.21329 0.96155 0.79660 1.02213 1.22242 0.96653 0.92159 0.99914 0.87368 1.22506 1.00327 0.96135 0.96427 1.23195 1.01141 0.95052 1.00192 1.22152 0.88690 0.82513 0.83010 1.92997 1.87066 1.60006 1.79302 1.93001 1.72938 1.90519 1.62596 1.23324 0.97698 0.94012 1.04141 0.92032 0.87021 0.87139 0.74516 0.92020 0.91781 0.88264 0.90276 0.88072 0.87582 0.88034 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.68 13.22 21.65 0.29 -55.39 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.55 -30.63 9.50 67.95 0.65 -29.99 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -4.87 6.16 71.24 0.44 -4.44 16 11 C 0.53 18.41 7.85 87.66 0.69 19.09 16 12 O -0.57 -25.38 15.86 -3.06 -0.05 -25.43 16 13 N -0.71 -15.29 5.48 -463.05 -2.54 -17.83 16 14 C 0.13 2.38 5.11 86.38 0.44 2.82 16 15 C -0.09 -1.01 2.91 -9.50 -0.03 -1.04 16 16 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 17 C -0.12 -1.06 6.20 31.71 0.20 -0.87 16 18 C -0.16 -1.54 6.51 31.35 0.20 -1.33 16 19 C 0.27 3.91 2.57 31.32 0.08 3.99 16 20 F -0.21 -3.93 17.04 44.97 0.77 -3.16 16 21 F -0.21 -3.70 17.04 44.97 0.77 -2.93 16 22 C -0.15 -1.86 5.85 31.67 0.19 -1.67 16 23 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.11 3.71 8.14 -2.40 -0.02 3.70 16 25 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 26 H 0.42 5.91 8.47 -92.71 -0.79 5.13 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.31 7.98 -2.39 -0.02 1.29 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.82 7.93 -2.39 -0.02 0.80 16 31 H 0.10 0.90 8.02 -2.39 -0.02 0.89 16 32 H 0.11 0.83 8.02 -2.39 -0.02 0.81 16 33 H 0.10 1.15 8.11 -2.38 -0.02 1.13 16 34 H 0.11 1.26 8.02 -2.39 -0.02 1.24 16 Total: -1.00 -76.04 311.62 3.75 -72.30 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.33 Total: 9.32 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 3.32 Total: -12.27 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -2.25 Total: -73.22 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 1.53 Total: -6.10 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -76.04 3.75 -72.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431090475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.153 kcal (2) G-P(sol) polarization free energy of solvation -76.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds