Wall clock time and date at job start Fri Apr 10 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 S 1.81401 * 109.47002 * 180.02562 * 9 7 2 11 11 O 1.42093 * 110.54547 * 291.62631 * 10 9 7 12 12 O 1.42105 * 110.53941 * 68.37970 * 10 9 7 13 13 N 1.65595 * 104.44822 * 179.97438 * 10 9 7 14 14 C 1.46502 * 120.00123 * 65.00073 * 13 10 9 15 15 C 1.53005 * 109.47538 * 164.99810 * 14 13 10 16 16 H 1.08999 * 109.86398 * 58.99617 * 15 14 13 17 17 C 1.54095 * 109.88001 * 180.02562 * 15 14 13 18 18 C 1.54812 * 104.18535 * 121.45153 * 17 15 14 19 19 C 1.54993 * 102.09142 * 20.88274 * 18 17 15 20 20 H 1.09004 * 110.61775 * 81.47377 * 19 18 17 21 21 C 1.52998 * 110.61733 * 204.47072 * 19 18 17 22 22 O 1.42901 * 109.47355 * 185.00198 * 21 19 18 23 23 O 1.43749 * 109.87524 * 297.83579 * 15 14 13 24 24 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 0.96997 * 120.00334 * 245.00088 * 13 10 9 28 28 H 1.09001 * 109.47518 * 285.00260 * 14 13 10 29 29 H 1.09008 * 109.46612 * 44.99751 * 14 13 10 30 30 H 1.08991 * 110.48984 * 240.13182 * 17 15 14 31 31 H 1.09005 * 110.48641 * 2.64737 * 17 15 14 32 32 H 1.09004 * 110.90398 * 139.08199 * 18 17 15 33 33 H 1.08996 * 110.91354 * 262.64265 * 18 17 15 34 34 H 1.09005 * 109.47301 * 304.99776 * 21 19 18 35 35 H 1.08997 * 109.47404 * 64.99853 * 21 19 18 36 36 H 0.96697 * 114.00224 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.8195 -3.5382 1.2376 12 8 3.8205 -3.5376 -1.2364 13 7 5.7657 -2.7594 0.0009 14 6 6.4486 -2.1613 1.1508 15 6 7.9437 -2.4778 1.0775 16 1 8.3602 -2.0860 0.1495 17 6 8.6713 -1.8532 2.2837 18 6 9.3365 -3.0587 2.9914 19 6 9.3831 -4.1151 1.8582 20 1 10.2381 -3.9401 1.2052 21 6 9.4292 -5.5289 2.4413 22 8 9.5889 -6.4757 1.3829 23 8 8.1463 -3.8993 1.1460 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 6.2799 -3.0705 -0.7604 28 1 6.3048 -1.0809 1.1372 29 1 6.0351 -2.5712 2.0724 30 1 9.4271 -1.1434 1.9477 31 1 7.9585 -1.3641 2.9478 32 1 10.3416 -2.8055 3.3288 33 1 8.7252 -3.4070 3.8238 34 1 10.2693 -5.6102 3.1312 35 1 8.5005 -5.7327 2.9741 36 1 9.6265 -7.3952 1.6800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582736583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:29 Heat of formation + Delta-G solvation = -175.956911 kcal Electronic energy + Delta-G solvation = -20317.185585 eV Core-core repulsion = 16928.403463 eV Total energy + Delta-G solvation = -3388.782122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91125 -36.87732 -36.16043 -35.06631 -34.77102 -33.22955 -32.39351 -30.68511 -29.75388 -26.85790 -23.53890 -23.03519 -21.55240 -21.29598 -18.69181 -17.67963 -17.52327 -16.89166 -16.58306 -16.08013 -15.82741 -15.41357 -15.14035 -14.37112 -14.23852 -14.02250 -13.84196 -13.28516 -12.88748 -12.69779 -12.43507 -12.18548 -11.99913 -11.87179 -11.60749 -11.36413 -11.18440 -11.12191 -11.02785 -10.86122 -10.75661 -10.31595 -10.29678 -9.90391 -9.77547 -9.57172 -8.91240 -8.82635 -6.30337 -4.38927 1.24011 3.14500 3.20583 3.22960 3.43275 3.69042 3.82767 4.22180 4.25901 4.54662 4.62254 4.74686 4.84969 4.91958 4.94109 4.99746 5.17052 5.18667 5.21753 5.28169 5.44511 5.48169 5.56289 5.71410 5.81175 5.84981 6.09380 6.29226 6.38310 6.80955 7.22218 7.38408 7.42775 8.02270 8.62252 9.24909 10.80905 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.004504 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.512029 B = 6215.654417 C = 6862.416290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.087 3.913 3 Si 0.885 3.115 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.086 0.914 9 C -0.475 4.475 10 S 2.608 3.392 11 O -0.973 6.973 12 O -0.973 6.973 13 N -1.127 6.127 14 C 0.119 3.881 15 C 0.069 3.931 16 H 0.076 0.924 17 C -0.151 4.151 18 C -0.148 4.148 19 C 0.074 3.926 20 H 0.075 0.925 21 C 0.081 3.919 22 O -0.567 6.567 23 O -0.351 6.351 24 H 0.271 0.729 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.412 0.588 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.467 -3.272 6.494 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.119 4.119 3 Si 0.711 3.289 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.104 0.896 9 C -0.610 4.610 10 S 2.706 3.294 11 O -0.963 6.963 12 O -0.964 6.964 13 N -0.883 5.883 14 C -0.008 4.008 15 C 0.010 3.990 16 H 0.094 0.906 17 C -0.189 4.189 18 C -0.186 4.186 19 C 0.016 3.984 20 H 0.093 0.907 21 C 0.004 3.996 22 O -0.372 6.372 23 O -0.270 6.270 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.245 0.755 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 21.571 -3.556 6.219 22.730 hybrid contribution 0.861 1.187 0.115 1.471 sum 22.432 -2.368 6.335 23.429 Atomic orbital electron populations 1.69875 1.06311 1.27751 1.47732 1.24912 0.94742 0.99214 0.93048 0.86687 0.80304 0.82916 0.78962 1.19655 1.20694 1.18841 1.20103 0.85199 0.96295 1.55532 0.89639 1.28262 1.08320 1.18841 1.05546 1.05046 0.71663 0.78839 0.73852 1.93485 1.82791 1.73991 1.46005 1.93505 1.82586 1.74803 1.45493 1.55745 1.27042 1.78551 1.27008 1.21474 0.91414 0.97698 0.90211 1.22977 0.95299 0.82401 0.98327 0.90583 1.22958 1.00403 0.98247 0.97306 1.23102 1.01930 0.95019 0.98528 1.23138 0.88889 0.93648 0.92696 0.90670 1.22197 1.00327 0.87944 0.89173 1.86538 1.96671 1.19181 1.34853 1.89074 1.39568 1.21437 1.76893 0.91893 0.90001 0.90099 0.75459 0.90718 0.89687 0.90127 0.89473 0.89922 0.89933 0.92383 0.92387 0.77356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.96 55.43 0.77 -25.59 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.89 20.44 27.47 -169.99 -4.67 15.77 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 7 C -0.53 -15.08 9.68 -34.44 -0.33 -15.41 16 8 H 0.09 2.62 7.96 -52.49 -0.42 2.20 16 9 C -0.48 -10.74 4.90 36.01 0.18 -10.57 16 10 S 2.61 55.74 5.38 -107.50 -0.58 55.16 16 11 O -0.97 -23.47 17.50 -57.54 -1.01 -24.48 16 12 O -0.97 -23.63 18.08 -57.54 -1.04 -24.67 16 13 N -1.13 -18.28 5.80 -10.61 -0.06 -18.35 16 14 C 0.12 1.61 5.60 -4.04 -0.02 1.59 16 15 C 0.07 0.78 3.51 -26.16 -0.09 0.69 16 16 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.15 -1.23 6.64 -25.20 -0.17 -1.40 16 18 C -0.15 -1.12 6.59 -24.72 -0.16 -1.29 16 19 C 0.07 0.75 3.63 -25.68 -0.09 0.66 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 21 C 0.08 0.74 6.79 37.16 0.25 0.99 16 22 O -0.57 -6.02 13.66 -35.23 -0.48 -6.50 16 23 O -0.35 -4.83 10.80 -35.23 -0.38 -5.21 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.08 1.68 7.20 -51.92 -0.37 1.31 16 26 H 0.08 1.67 7.57 -51.92 -0.39 1.28 16 27 H 0.41 6.05 8.62 -34.47 -0.30 5.75 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.23 7.70 -51.92 -0.40 0.83 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.66 7.70 -51.93 -0.40 0.26 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.38 2.16 9.12 45.56 0.42 2.58 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -37.96 315.41 -7.64 -45.60 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.41 Total: 5.85 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.54 Total: -22.35 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.71 Total: -43.94 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -2.91 Total: -60.85 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Atomic # 16 Polarization: 55.74 SS G_CDS: -0.58 Total: 55.16 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.96 -7.64 -45.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582736583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.360 kcal (2) G-P(sol) polarization free energy of solvation -37.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds