Wall clock time and date at job start Fri Apr 10 2020 14:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 S 1.81401 * 109.47002 * 180.02562 * 9 7 2 11 11 O 1.42093 * 110.54547 * 291.62631 * 10 9 7 12 12 O 1.42105 * 110.53941 * 68.37970 * 10 9 7 13 13 N 1.65595 * 104.44822 * 179.97438 * 10 9 7 14 14 C 1.46502 * 120.00123 * 65.00073 * 13 10 9 15 15 C 1.53005 * 109.47538 * 164.99810 * 14 13 10 16 16 H 1.08999 * 109.86398 * 58.99617 * 15 14 13 17 17 C 1.54095 * 109.88001 * 180.02562 * 15 14 13 18 18 C 1.54812 * 104.18535 * 121.45153 * 17 15 14 19 19 C 1.54993 * 102.09142 * 20.88274 * 18 17 15 20 20 H 1.09004 * 110.61775 * 81.47377 * 19 18 17 21 21 C 1.52998 * 110.61733 * 204.47072 * 19 18 17 22 22 O 1.42901 * 109.47355 * 185.00198 * 21 19 18 23 23 O 1.43749 * 109.87524 * 297.83579 * 15 14 13 24 24 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 0.96997 * 120.00334 * 245.00088 * 13 10 9 28 28 H 1.09001 * 109.47518 * 285.00260 * 14 13 10 29 29 H 1.09008 * 109.46612 * 44.99751 * 14 13 10 30 30 H 1.08991 * 110.48984 * 240.13182 * 17 15 14 31 31 H 1.09005 * 110.48641 * 2.64737 * 17 15 14 32 32 H 1.09004 * 110.90398 * 139.08199 * 18 17 15 33 33 H 1.08996 * 110.91354 * 262.64265 * 18 17 15 34 34 H 1.09005 * 109.47301 * 304.99776 * 21 19 18 35 35 H 1.08997 * 109.47404 * 64.99853 * 21 19 18 36 36 H 0.96697 * 114.00224 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.8195 -3.5382 1.2376 12 8 3.8205 -3.5376 -1.2364 13 7 5.7657 -2.7594 0.0009 14 6 6.4486 -2.1613 1.1508 15 6 7.9437 -2.4778 1.0775 16 1 8.3602 -2.0860 0.1495 17 6 8.6713 -1.8532 2.2837 18 6 9.3365 -3.0587 2.9914 19 6 9.3831 -4.1151 1.8582 20 1 10.2381 -3.9401 1.2052 21 6 9.4292 -5.5289 2.4413 22 8 9.5889 -6.4757 1.3829 23 8 8.1463 -3.8993 1.1460 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 6.2799 -3.0705 -0.7604 28 1 6.3048 -1.0809 1.1372 29 1 6.0351 -2.5712 2.0724 30 1 9.4271 -1.1434 1.9477 31 1 7.9585 -1.3641 2.9478 32 1 10.3416 -2.8055 3.3288 33 1 8.7252 -3.4070 3.8238 34 1 10.2693 -5.6102 3.1312 35 1 8.5005 -5.7327 2.9741 36 1 9.6265 -7.3952 1.6800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582736583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:28 Heat of formation + Delta-G solvation = -211.032045 kcal Electronic energy + Delta-G solvation = -20318.706557 eV Core-core repulsion = 16928.403463 eV Total energy + Delta-G solvation = -3390.303094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68388 -38.02048 -37.61637 -36.86470 -35.98765 -35.31399 -33.11385 -31.75920 -31.54218 -27.74109 -25.08254 -24.35214 -22.29494 -22.06177 -20.28509 -19.48478 -18.42246 -18.20158 -17.79933 -17.34562 -17.07267 -16.78692 -16.32982 -16.02050 -15.55573 -14.94732 -14.68515 -14.56397 -14.32245 -14.08381 -13.85300 -13.51863 -13.38315 -13.06479 -12.98327 -12.72981 -12.60833 -12.55354 -12.22603 -12.02924 -11.98573 -11.83244 -11.52389 -11.35007 -10.99415 -10.91881 -10.61383 -10.28939 -8.42954 -6.60417 -0.48495 1.35847 1.39602 1.50860 2.05926 2.30283 2.81325 2.88697 2.99964 3.23144 3.45373 3.60056 3.85871 3.99258 4.14662 4.23692 4.28678 4.37601 4.44180 4.48550 4.54836 4.59116 4.66472 4.73853 4.96263 4.97552 5.04052 5.17558 5.23952 5.25166 5.83039 6.03594 6.20300 6.44502 6.87802 7.08162 8.72618 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.004504 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.512029 B = 6215.654417 C = 6862.416290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.224 1.224 7 C -0.559 4.559 8 H 0.035 0.965 9 C -0.479 4.479 10 S 2.628 3.372 11 O -1.007 7.007 12 O -1.010 7.010 13 N -1.110 6.110 14 C 0.104 3.896 15 C 0.066 3.934 16 H 0.089 0.911 17 C -0.147 4.147 18 C -0.141 4.141 19 C 0.062 3.938 20 H 0.078 0.922 21 C 0.077 3.923 22 O -0.595 6.595 23 O -0.391 6.391 24 H 0.276 0.724 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.422 0.578 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.953 -0.990 7.269 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.180 4.180 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.146 1.146 7 C -0.598 4.598 8 H 0.053 0.947 9 C -0.612 4.612 10 S 2.725 3.275 11 O -0.997 6.997 12 O -1.001 7.001 13 N -0.871 5.871 14 C -0.022 4.022 15 C 0.006 3.994 16 H 0.107 0.893 17 C -0.185 4.185 18 C -0.178 4.178 19 C 0.005 3.995 20 H 0.095 0.905 21 C -0.001 4.001 22 O -0.403 6.403 23 O -0.311 6.311 24 H 0.085 0.915 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.257 0.743 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 25.074 -1.314 7.002 26.066 hybrid contribution -0.229 0.349 -0.118 0.434 sum 24.845 -0.965 6.883 25.799 Atomic orbital electron populations 1.70036 1.08726 1.29337 1.49180 1.26120 0.95743 1.04104 0.92033 0.85572 0.80282 0.76405 0.80094 1.18334 1.20390 1.14586 1.20380 0.88479 0.94844 1.56090 0.94678 1.28236 1.04506 1.20350 1.08151 1.04138 0.72764 0.78206 0.72349 1.93437 1.84153 1.74760 1.47332 1.93444 1.84054 1.75679 1.46878 1.55229 1.24820 1.78674 1.28403 1.21912 0.92808 0.99229 0.88253 1.23120 0.93777 0.81914 1.00541 0.89316 1.23004 1.00840 0.98624 0.96042 1.23109 1.03466 0.93836 0.97427 1.23417 0.87664 0.94903 0.93505 0.90459 1.22356 1.01116 0.87412 0.89173 1.86484 1.96736 1.20810 1.36306 1.89036 1.41331 1.22964 1.77748 0.91472 0.86892 0.87203 0.74300 0.87582 0.91051 0.87700 0.88813 0.87159 0.90178 0.89095 0.93568 0.75370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 2 C 0.02 1.20 5.47 84.65 0.46 1.66 16 3 Si 0.96 40.20 27.47 68.60 1.88 42.09 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.22 -7.90 6.54 99.48 0.65 -7.24 16 7 C -0.56 -32.27 9.68 25.60 0.25 -32.02 16 8 H 0.03 2.29 7.96 -2.91 -0.02 2.27 16 9 C -0.48 -20.81 4.90 71.24 0.35 -20.46 16 10 S 2.63 112.31 5.38 -56.49 -0.30 112.01 16 11 O -1.01 -49.54 17.50 -127.65 -2.23 -51.78 16 12 O -1.01 -50.01 18.08 -127.65 -2.31 -52.32 16 13 N -1.11 -34.29 5.80 -187.47 -1.09 -35.38 16 14 C 0.10 2.54 5.60 86.38 0.48 3.03 16 15 C 0.07 1.30 3.51 30.97 0.11 1.41 16 16 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 17 C -0.15 -1.83 6.64 31.58 0.21 -1.62 16 18 C -0.14 -1.68 6.59 31.89 0.21 -1.47 16 19 C 0.06 1.14 3.63 31.28 0.11 1.26 16 20 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 21 C 0.08 1.30 6.79 71.98 0.49 1.78 16 22 O -0.59 -12.18 13.66 -148.98 -2.04 -14.22 16 23 O -0.39 -10.25 10.80 -148.98 -1.61 -11.86 16 24 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.11 4.22 7.20 -2.39 -0.02 4.20 16 26 H 0.11 4.18 7.57 -2.39 -0.02 4.16 16 27 H 0.42 11.75 8.62 -96.75 -0.83 10.92 16 28 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.95 7.70 -2.38 -0.02 1.93 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.06 7.70 -2.38 -0.02 1.04 16 32 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.08 1.00 8.06 -2.39 -0.02 0.98 16 34 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.40 4.28 9.12 -74.06 -0.68 3.60 16 Total: -1.00 -85.91 315.41 -5.18 -91.09 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.47 Total: 24.10 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 2.67 Total: -46.44 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -0.79 Total: -92.67 kcal Atomic # 8 Polarization: -121.99 SS G_CDS: -8.19 Total: -130.17 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.88 Total: 42.09 kcal Atomic # 16 Polarization: 112.31 SS G_CDS: -0.30 Total: 112.01 kcal Total: -85.91 -5.18 -91.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582736583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.937 kcal (2) G-P(sol) polarization free energy of solvation -85.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds