Wall clock time and date at job start Fri Apr 10 2020 13:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.45205 * 109.47033 * 198.53814 * 3 2 1 5 5 C 1.34222 * 117.00095 * 179.97438 * 4 3 2 6 6 O 1.20827 * 120.00267 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99927 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.64052 * 334.45922 * 7 5 4 9 9 C 1.53027 * 109.63954 * 214.04694 * 7 5 4 10 10 C 1.50064 * 110.14599 * 289.74853 * 9 7 5 11 11 C 1.29446 * 124.07829 * 342.87355 * 10 9 7 12 12 C 1.50063 * 124.07323 * 0.44270 * 11 10 9 13 13 C 1.53011 * 110.15614 * 342.90961 * 12 11 10 14 14 H 1.09004 * 109.62650 * 289.72395 * 13 12 11 15 15 C 1.50704 * 109.64976 * 169.10194 * 13 12 11 16 16 O 1.21211 * 119.99690 * 241.03947 * 15 13 12 17 17 O 1.34302 * 119.99895 * 61.03321 * 15 13 12 18 18 C 1.34927 * 116.99764 * 179.97438 * 17 15 13 19 19 H 1.08001 * 120.00238 * 0.02562 * 18 17 15 20 20 C 1.38758 * 119.99895 * 180.02562 * 18 17 15 21 21 N 1.31437 * 119.99848 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99788 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47006 * 59.99805 * 22 20 18 24 24 H 1.48502 * 109.46685 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46820 * 299.99904 * 22 20 18 26 26 H 1.09002 * 109.47200 * 78.54073 * 3 2 1 27 27 H 1.08996 * 109.47103 * 318.53639 * 3 2 1 28 28 H 1.09002 * 109.35958 * 49.95814 * 9 7 5 29 29 H 1.09003 * 109.35756 * 169.68367 * 9 7 5 30 30 H 1.08006 * 117.96078 * 162.84948 * 10 9 7 31 31 H 1.07998 * 117.96660 * 180.46969 * 11 10 9 32 32 H 1.09008 * 109.35784 * 103.09902 * 12 11 10 33 33 H 1.08999 * 109.36022 * 222.68625 * 12 11 10 34 34 H 0.97006 * 120.00244 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0914 1.2989 0.4353 5 6 4.4219 1.4661 0.4917 6 8 5.1585 0.5579 0.1870 7 6 4.9973 2.7868 0.9339 8 1 4.2812 3.5839 0.7337 9 6 6.2977 3.0612 0.1753 10 6 7.3740 2.1238 0.6387 11 6 7.3220 1.4481 1.7416 12 6 6.1737 1.5004 2.7062 13 6 5.3124 2.7355 2.4342 14 1 5.8578 3.6334 2.7250 15 6 4.0290 2.6411 3.2185 16 8 2.9649 2.6169 2.6386 17 8 4.0644 2.5838 4.5598 18 6 2.8800 2.5008 5.2008 19 1 1.9600 2.4828 4.6353 20 6 2.8439 2.4387 6.5865 21 7 3.9635 2.4612 7.2747 22 14 1.2042 2.3232 7.4738 23 1 0.4926 1.0938 7.0409 24 1 1.4372 2.2708 8.9395 25 1 0.3793 3.5138 7.1464 26 1 2.9714 -0.2033 -1.0072 27 1 2.9716 -0.7693 0.6804 28 1 6.1300 2.9194 -0.8923 29 1 6.6128 4.0886 0.3582 30 1 8.2463 2.0053 0.0129 31 1 8.1570 0.8071 1.9827 32 1 5.5647 0.6035 2.5921 33 1 6.5592 1.5458 3.7247 34 1 3.9383 2.4181 8.2435 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754255146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:44 Heat of formation + Delta-G solvation = -133.786029 kcal Electronic energy + Delta-G solvation = -22067.435854 eV Core-core repulsion = 18545.038447 eV Total energy + Delta-G solvation = -3522.397407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27815 -40.84755 -39.19511 -37.81503 -37.21067 -36.78883 -34.28320 -32.59865 -32.11497 -30.07772 -27.67644 -25.51196 -24.88623 -22.51689 -21.30519 -19.81745 -19.74198 -19.34026 -18.53663 -18.04309 -17.71344 -17.06446 -16.43300 -16.33438 -16.26963 -15.77970 -15.37665 -14.71052 -14.53165 -14.32957 -14.25460 -13.99023 -13.69406 -13.62232 -13.41048 -13.28764 -13.19232 -13.02927 -12.81643 -12.29037 -12.20597 -12.01975 -11.82882 -11.71658 -11.49048 -11.23388 -10.79549 -10.67666 -9.70525 -8.52386 -6.30377 0.87135 1.14222 1.31088 1.32485 1.46627 1.52494 1.58749 1.67516 2.09232 2.19504 2.68338 2.78683 2.98930 3.48101 3.65934 3.81479 4.00299 4.14771 4.18539 4.21534 4.27664 4.39964 4.60799 4.70190 4.86699 4.90890 4.98486 5.04463 5.19171 5.27414 5.31227 5.82790 5.85547 6.17790 6.25168 6.71315 6.74632 6.93863 7.81232 8.67911 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.006803 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.134027 B = 4115.111577 C = 5671.882261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.236 3.764 3 C 0.159 3.841 4 O -0.347 6.347 5 C 0.480 3.520 6 O -0.502 6.502 7 C -0.065 4.065 8 H 0.117 0.883 9 C -0.070 4.070 10 C -0.140 4.140 11 C -0.154 4.154 12 C -0.080 4.080 13 C -0.055 4.055 14 H 0.138 0.862 15 C 0.390 3.610 16 O -0.554 6.554 17 O -0.242 6.242 18 C -0.415 4.415 19 H 0.079 0.921 20 C -0.001 4.001 21 N -0.900 5.900 22 Si 1.007 2.993 23 H -0.267 1.267 24 H -0.259 1.259 25 H -0.263 1.263 26 H 0.157 0.843 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.076 -0.848 -14.178 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.082 4.082 3 C 0.083 3.917 4 O -0.262 6.262 5 C 0.323 3.677 6 O -0.390 6.390 7 C -0.084 4.084 8 H 0.135 0.865 9 C -0.106 4.106 10 C -0.157 4.157 11 C -0.172 4.172 12 C -0.117 4.117 13 C -0.074 4.074 14 H 0.155 0.845 15 C 0.236 3.764 16 O -0.450 6.450 17 O -0.150 6.150 18 C -0.491 4.491 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.538 5.538 22 Si 0.827 3.173 23 H -0.192 1.192 24 H -0.183 1.183 25 H -0.188 1.188 26 H 0.174 0.826 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.413 -1.159 -14.195 15.619 hybrid contribution -0.650 -0.340 0.840 1.115 sum 5.763 -1.499 -13.354 14.622 Atomic orbital electron populations 1.81203 1.13975 1.07531 1.10277 1.28761 0.94689 0.92920 0.91798 1.20316 0.80106 0.85406 1.05906 1.86738 1.25854 1.35168 1.78404 1.23688 0.79433 0.91163 0.73438 1.90655 1.59897 1.43077 1.45328 1.21124 1.00106 0.93381 0.93827 0.86499 1.20561 0.88728 1.01237 1.00101 1.22077 0.99664 0.97679 0.96321 1.21766 0.97735 1.01531 0.96138 1.20339 0.95814 0.95023 1.00504 1.20924 0.91332 1.03559 0.91618 0.84461 1.24248 0.92299 0.77101 0.82721 1.90630 1.33390 1.50162 1.70785 1.83890 1.35244 1.76687 1.19187 1.21273 0.83634 1.54242 0.89915 0.90351 1.26353 1.03095 0.95080 0.95604 1.70051 1.28533 1.47117 1.08099 0.84835 0.75570 0.79514 0.77425 1.19199 1.18294 1.18758 0.82597 0.85745 0.88000 0.86191 0.84947 0.86448 0.93086 0.90600 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.44 18.54 20.01 0.37 -15.07 16 2 C 0.24 6.79 15.83 89.44 1.42 8.20 16 3 C 0.16 3.64 5.94 70.18 0.42 4.05 16 4 O -0.35 -10.83 8.43 -44.71 -0.38 -11.21 16 5 C 0.48 13.97 5.47 71.24 0.39 14.36 16 6 O -0.50 -14.35 13.41 21.96 0.29 -14.05 16 7 C -0.06 -1.71 2.28 -11.40 -0.03 -1.74 16 8 H 0.12 3.04 7.91 -2.39 -0.02 3.02 16 9 C -0.07 -1.21 5.41 29.66 0.16 -1.05 16 10 C -0.14 -2.69 8.75 27.03 0.24 -2.45 16 11 C -0.15 -3.70 8.89 27.03 0.24 -3.46 16 12 C -0.08 -2.54 4.75 29.65 0.14 -2.40 16 13 C -0.06 -1.82 2.48 -11.40 -0.03 -1.85 16 14 H 0.14 3.93 8.12 -2.39 -0.02 3.91 16 15 C 0.39 18.29 6.95 71.24 0.50 18.79 16 16 O -0.55 -27.93 13.06 27.42 0.36 -27.57 16 17 O -0.24 -13.72 9.69 14.89 0.14 -13.57 16 18 C -0.41 -24.81 9.65 67.94 0.66 -24.15 16 19 H 0.08 4.80 6.86 -2.91 -0.02 4.78 16 20 C 0.00 -0.05 5.49 84.88 0.47 0.42 16 21 N -0.90 -52.74 13.67 21.63 0.30 -52.44 16 22 Si 1.01 43.96 29.55 68.60 2.03 45.99 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H 0.16 2.23 8.13 -2.39 -0.02 2.21 16 27 H 0.12 2.61 8.13 -2.39 -0.02 2.59 16 28 H 0.10 1.42 8.11 -2.39 -0.02 1.40 16 29 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.05 1.84 6.99 -2.38 -0.02 1.83 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.28 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -76.66 304.54 8.81 -67.85 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.13 Total: 11.39 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.56 Total: 8.70 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: 0.67 Total: -67.51 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: 0.42 Total: -66.41 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -76.66 8.81 -67.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754255146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.935 kcal (2) G-P(sol) polarization free energy of solvation -76.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds