Wall clock time and date at job start Fri Apr 10 2020 14:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43197 * 119.99876 * 42.09322 * 3 2 1 5 5 N 3.51036 * 140.68436 * 42.09128 * 2 1 3 6 6 C 1.41146 * 120.00040 * 221.81870 * 3 2 1 7 7 C 1.38979 * 119.99694 * 355.00818 * 6 3 2 8 8 H 1.07996 * 120.00409 * 334.15276 * 7 6 3 9 9 C 1.40852 * 119.99613 * 154.14366 * 7 6 3 10 10 N 1.30326 * 119.99907 * 165.97411 * 9 7 6 11 11 Si 1.86797 * 119.99890 * 345.98333 * 9 7 6 12 12 H 1.48494 * 109.47523 * 87.88222 * 11 9 7 13 13 H 1.48509 * 109.46573 * 207.88196 * 11 9 7 14 14 H 1.48498 * 109.47315 * 327.87527 * 11 9 7 15 15 N 1.38358 * 120.00163 * 175.01100 * 6 3 2 16 16 C 1.39276 * 120.00031 * 119.70139 * 15 6 3 17 17 C 1.39505 * 119.45280 * 353.74047 * 16 15 6 18 18 C 1.38034 * 119.61438 * 179.71073 * 17 16 15 19 19 C 1.39363 * 118.39911 * 0.56257 * 18 17 16 20 20 N 1.37786 * 133.57676 * 179.74694 * 19 18 17 21 21 H 0.96995 * 125.10914 * 359.93452 * 20 19 18 22 22 C 1.36591 * 109.78002 * 179.97438 * 20 19 18 23 23 C 1.34393 * 109.92237 * 359.97438 * 22 20 19 24 24 C 1.40598 * 119.09203 * 359.70535 * 19 18 17 25 25 N 1.32041 * 119.45482 * 174.01657 * 16 15 6 26 26 H 0.96999 * 120.00326 * 180.02562 * 10 9 7 27 27 H 0.96995 * 120.00243 * 299.70864 * 15 6 3 28 28 H 1.08001 * 120.19657 * 359.97438 * 17 16 15 29 29 H 1.07997 * 120.80252 * 180.29047 * 18 17 16 30 30 H 1.08003 * 125.04165 * 179.97438 * 22 20 19 31 31 H 1.07996 * 126.45588 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.9193 -0.8313 5 7 3.8519 -1.6505 -1.4909 6 6 3.2734 0.9119 0.8150 7 6 2.5819 1.8767 1.5380 8 1 1.6165 2.2191 1.1959 9 6 3.1403 2.4078 2.7170 10 7 2.6406 3.4896 3.2448 11 14 4.5973 1.5619 3.5238 12 1 5.8585 2.0797 2.9354 13 1 4.5828 1.8361 4.9833 14 1 4.5086 0.0974 3.2945 15 7 4.6531 0.8448 0.8942 16 6 5.4269 1.9353 0.5046 17 6 4.8097 3.0384 -0.0857 18 6 5.5726 4.1235 -0.4676 19 6 6.9494 4.0724 -0.2581 20 7 7.9823 4.9476 -0.5144 21 1 7.8845 5.8213 -0.9242 22 6 9.1648 4.3995 -0.1056 23 6 8.9480 3.1808 0.4177 24 6 7.5084 2.9276 0.3367 25 7 6.7331 1.9057 0.6950 26 1 3.0254 3.8556 4.0565 27 1 5.0814 0.0382 1.2210 28 1 3.7406 3.0452 -0.2390 29 1 5.1142 4.9894 -0.9220 30 1 10.1308 4.8750 -0.1904 31 1 9.6951 2.5135 0.8212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169075469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:43 Heat of formation + Delta-G solvation = 122.147661 kcal Electronic energy + Delta-G solvation = -20263.344139 eV Core-core repulsion = 17123.939272 eV Total energy + Delta-G solvation = -3139.404867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31097 -40.22442 -38.06004 -36.77778 -36.55595 -35.37713 -33.63692 -32.29201 -30.43571 -29.07706 -28.99399 -24.37663 -24.01199 -22.47767 -21.54216 -20.64820 -19.31481 -19.10701 -18.30108 -17.86632 -17.58513 -16.68323 -15.88147 -15.50022 -14.90948 -14.72054 -14.55818 -14.44701 -14.32615 -14.06826 -13.94225 -13.74273 -13.48033 -13.45539 -13.40663 -13.24827 -12.91314 -12.77485 -12.66187 -12.07512 -11.57229 -11.15549 -10.80113 -10.30308 -9.78141 -9.39169 -8.93816 -8.34465 -7.19785 0.19504 0.27005 0.72373 1.30899 1.39043 1.47244 1.85739 1.93300 2.00998 2.11155 2.21368 2.34570 2.50597 2.61034 3.09853 3.35224 3.60001 3.71224 3.95697 4.10083 4.24458 4.42628 4.56619 4.65913 4.74486 4.88829 5.11531 5.15950 5.35871 5.47577 5.62653 5.63529 5.79487 6.04925 6.08979 6.46228 6.57969 6.80163 7.12485 7.29279 7.36422 7.57537 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.006906 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.430708 B = 4053.252908 C = 4700.013931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C 0.330 3.670 3 C -0.302 4.302 4 C 0.317 3.683 5 N -0.550 5.550 6 C 0.358 3.642 7 C -0.353 4.353 8 H 0.106 0.894 9 C 0.067 3.933 10 N -0.738 5.738 11 Si 0.951 3.049 12 H -0.244 1.244 13 H -0.284 1.284 14 H -0.252 1.252 15 N -0.678 5.678 16 C 0.383 3.617 17 C -0.196 4.196 18 C -0.046 4.046 19 C -0.011 4.011 20 N -0.575 5.575 21 H 0.434 0.566 22 C 0.105 3.895 23 C -0.243 4.243 24 C 0.094 3.906 25 N -0.536 5.536 26 H 0.316 0.684 27 H 0.406 0.594 28 H 0.145 0.855 29 H 0.162 0.838 30 H 0.228 0.772 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.558 11.660 0.501 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.232 5.232 2 C 0.023 3.977 3 C -0.321 4.321 4 C 0.011 3.989 5 N -0.233 5.233 6 C 0.254 3.746 7 C -0.380 4.380 8 H 0.124 0.876 9 C -0.164 4.164 10 N -0.356 5.356 11 Si 0.775 3.225 12 H -0.168 1.168 13 H -0.212 1.212 14 H -0.176 1.176 15 N -0.311 5.311 16 C 0.143 3.857 17 C -0.220 4.220 18 C -0.075 4.075 19 C -0.120 4.120 20 N -0.181 5.181 21 H 0.274 0.726 22 C -0.025 4.025 23 C -0.270 4.270 24 C -0.039 4.039 25 N -0.254 5.254 26 H 0.128 0.872 27 H 0.244 0.756 28 H 0.163 0.837 29 H 0.180 0.820 30 H 0.244 0.756 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.920 10.280 -0.068 17.304 hybrid contribution -0.062 0.448 0.376 0.588 sum 13.858 10.728 0.308 17.528 Atomic orbital electron populations 1.81058 1.12762 1.14359 1.15016 1.24756 0.91391 0.90862 0.90705 1.12816 0.82521 1.14830 1.21895 1.25228 0.92045 0.90968 0.90686 1.81089 1.10295 1.15639 1.16257 1.16552 0.79638 0.89588 0.88790 1.20040 1.03818 1.11769 1.02396 0.87586 1.26995 0.99109 0.93596 0.96734 1.69361 1.35274 1.13877 1.17130 0.85594 0.78973 0.81197 0.76742 1.16782 1.21181 1.17641 1.41924 1.03803 1.15893 1.69519 1.17933 0.87337 0.87435 0.92951 1.21551 1.02077 0.94009 1.04336 1.20539 0.89530 0.98908 0.98477 1.18984 0.91126 0.94087 1.07836 1.41553 1.04370 1.17832 1.54326 0.72580 1.22568 0.90971 0.93119 0.95853 1.21724 0.91210 1.00009 1.14015 1.20260 0.95527 0.89129 0.98958 1.66383 1.03804 1.30772 1.24438 0.87188 0.75551 0.83737 0.82005 0.75599 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.35 18.54 19.01 0.35 -26.00 16 2 C 0.33 15.12 14.02 88.33 1.24 16.36 16 3 C -0.30 -13.07 5.88 -20.07 -0.12 -13.19 16 4 C 0.32 14.29 14.82 88.33 1.31 15.60 16 5 N -0.55 -25.91 18.54 19.01 0.35 -25.56 16 6 C 0.36 14.64 4.44 39.00 0.17 14.81 16 7 C -0.35 -14.78 7.16 23.09 0.17 -14.61 16 8 H 0.11 4.82 7.43 -2.91 -0.02 4.79 16 9 C 0.07 2.71 5.19 85.56 0.44 3.15 16 10 N -0.74 -29.86 13.90 21.98 0.31 -29.55 16 11 Si 0.95 34.86 24.34 68.60 1.67 36.53 16 12 H -0.24 -9.38 5.49 99.48 0.55 -8.83 16 13 H -0.28 -10.12 7.11 99.48 0.71 -9.41 16 14 H -0.25 -9.25 6.72 99.48 0.67 -8.58 16 15 N -0.68 -26.58 2.25 -184.56 -0.42 -27.00 16 16 C 0.38 14.73 5.12 133.17 0.68 15.42 16 17 C -0.20 -6.90 8.73 22.53 0.20 -6.71 16 18 C -0.05 -1.33 10.18 22.49 0.23 -1.10 16 19 C -0.01 -0.31 7.29 39.05 0.28 -0.02 16 20 N -0.58 -9.94 6.07 -187.48 -1.14 -11.08 16 21 H 0.43 4.08 8.96 -92.71 -0.83 3.25 16 22 C 0.11 1.60 11.81 83.07 0.98 2.58 16 23 C -0.24 -5.91 11.08 23.52 0.26 -5.65 16 24 C 0.09 3.11 7.51 41.64 0.31 3.43 16 25 N -0.54 -20.72 9.55 -182.39 -1.74 -22.47 16 26 H 0.32 11.40 8.29 -92.71 -0.77 10.63 16 27 H 0.41 15.61 7.97 -92.71 -0.74 14.87 16 28 H 0.14 5.27 6.13 -2.91 -0.02 5.26 16 29 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 30 H 0.23 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -60.52 288.70 5.02 -55.51 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.53 Total: 19.54 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 6.16 Total: 30.07 kcal Atomic # 7 Polarization: -139.36 SS G_CDS: -2.29 Total: -141.65 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 1.67 Total: 36.53 kcal Total: -60.52 5.02 -55.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169075469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.656 kcal (2) G-P(sol) polarization free energy of solvation -60.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds