Wall clock time and date at job start Fri Apr 10 2020 14:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09000 * 110.02281 * 54.29423 * 15 14 13 17 17 C 1.54266 * 110.03320 * 175.68907 * 15 14 13 18 18 C 1.54893 * 104.19436 * 142.89166 * 17 15 14 19 19 C 1.54885 * 102.75049 * 322.05881 * 18 17 15 20 20 C 1.53878 * 110.03272 * 292.90336 * 15 14 13 21 21 F 1.39903 * 110.03006 * 0.02562 * 20 15 14 22 22 F 1.39901 * 110.03188 * 121.42826 * 20 15 14 23 23 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 25 25 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.09002 * 110.48796 * 261.57016 * 17 15 14 30 30 H 1.08993 * 110.48889 * 24.21580 * 17 15 14 31 31 H 1.09004 * 110.75515 * 80.37277 * 18 17 15 32 32 H 1.09001 * 110.75492 * 203.73601 * 18 17 15 33 33 H 1.09005 * 110.48560 * 156.62522 * 19 18 17 34 34 H 1.09001 * 110.48412 * 279.26255 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 1 4.1733 -8.4840 0.8234 17 6 2.9786 -10.1457 0.0944 18 6 3.9300 -10.9600 -0.8171 19 6 4.1799 -9.9931 -2.0010 20 6 4.2672 -8.6006 -1.3405 21 9 3.6720 -7.6399 -2.1652 22 9 5.6043 -8.2653 -1.1019 23 1 -0.4849 0.8400 -0.0004 24 1 3.1246 -3.7313 0.8905 25 1 3.1246 -3.7313 -0.8894 26 1 3.8011 -6.1834 0.0015 27 1 1.7226 -7.8789 0.8860 28 1 1.7214 -7.8714 -0.8939 29 1 3.0390 -10.5010 1.1232 30 1 1.9539 -10.2074 -0.2718 31 1 4.8622 -11.1855 -0.2991 32 1 3.4468 -11.8747 -1.1607 33 1 5.1171 -10.2370 -2.5015 34 1 3.3492 -10.0301 -2.7056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273199014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:18 Heat of formation + Delta-G solvation = -153.204322 kcal Electronic energy + Delta-G solvation = -19566.269639 eV Core-core repulsion = 16067.386628 eV Total energy + Delta-G solvation = -3498.883011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.13712 -47.17571 -39.25578 -37.86396 -34.42610 -32.39681 -30.89630 -28.87995 -28.04072 -25.49703 -24.52549 -21.82122 -20.64041 -20.17475 -18.02998 -17.85020 -17.11408 -16.35488 -16.11270 -15.95298 -15.14553 -14.77553 -14.66053 -14.45481 -14.16653 -13.90238 -13.56226 -13.31914 -13.04147 -12.93610 -12.58934 -12.26613 -12.01565 -11.78402 -11.71397 -11.63227 -11.19118 -11.01259 -11.01087 -10.86450 -10.73756 -9.79303 -9.37296 -9.03275 -8.86436 -8.20522 -6.46319 -6.18421 -3.88707 3.03826 3.14800 3.26163 3.29470 3.32714 3.40154 3.54389 3.67175 3.88843 4.01509 4.23799 4.50574 4.62507 4.73724 4.85959 4.91607 4.97691 5.16523 5.20396 5.25671 5.40780 5.45855 5.46742 5.59305 5.66038 5.73049 5.86720 5.94876 6.19589 6.60420 7.62576 7.71405 8.38424 8.64503 9.26716 10.89021 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.003456 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.172560 B = 8099.164333 C = 8504.285805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.130 3.870 15 C -0.145 4.145 16 H 0.107 0.893 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.162 4.162 20 C 0.279 3.721 21 F -0.187 7.187 22 F -0.198 7.198 23 H 0.269 0.731 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.397 0.603 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 -22.928 -1.015 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.006 3.994 15 C -0.164 4.164 16 H 0.125 0.875 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.200 4.200 20 C 0.243 3.757 21 F -0.168 7.168 22 F -0.179 7.179 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.231 0.769 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.261 -23.110 -1.030 24.563 hybrid contribution 2.644 1.553 -0.114 3.069 sum 10.905 -21.556 -1.144 24.185 Atomic orbital electron populations 1.70010 1.05947 1.27532 1.46875 1.24990 0.95027 0.99002 0.94547 0.86222 0.79229 0.81227 0.78808 1.19935 1.20822 1.19942 1.22842 0.94911 0.91702 1.58962 0.90972 1.85358 1.04965 0.96260 1.96720 1.23530 1.06551 0.95342 1.04961 1.20264 0.86436 0.86224 0.74964 1.90694 1.15307 1.85623 1.47660 1.45960 1.09937 1.05275 1.77980 1.21227 0.94452 0.80368 1.03349 1.23125 0.98738 0.98216 0.96326 0.87501 1.22359 1.00158 0.91334 1.01393 1.22482 1.00294 0.98036 0.95168 1.23390 1.05316 0.91787 0.99548 1.21872 0.75889 0.87255 0.90718 1.93076 1.83209 1.66604 1.73901 1.93024 1.36148 1.93750 1.95025 0.92152 0.89251 0.89175 0.76932 0.90441 0.90625 0.89732 0.89830 0.90418 0.89749 0.88938 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.54 -15.60 9.50 30.94 0.29 -15.30 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.24 6.16 36.01 0.22 -3.02 16 11 C 0.53 10.46 7.85 -10.98 -0.09 10.37 16 12 O -0.52 -12.09 15.86 5.55 0.09 -12.00 16 13 N -0.74 -10.62 4.63 -60.30 -0.28 -10.90 16 14 C 0.13 1.53 4.39 -4.04 -0.02 1.51 16 15 C -0.14 -1.20 2.82 -89.50 -0.25 -1.45 16 16 H 0.11 0.81 8.02 -51.93 -0.42 0.40 16 17 C -0.11 -0.65 6.36 -25.07 -0.16 -0.81 16 18 C -0.12 -0.59 6.91 -24.74 -0.17 -0.76 16 19 C -0.16 -1.08 6.41 -25.02 -0.16 -1.24 16 20 C 0.28 2.66 2.31 -25.56 -0.06 2.60 16 21 F -0.19 -2.38 14.73 2.25 0.03 -2.35 16 22 F -0.20 -2.14 17.04 2.25 0.04 -2.10 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 25 H 0.09 1.80 8.14 -51.91 -0.42 1.37 16 26 H 0.40 4.92 8.30 -40.82 -0.34 4.58 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -35.04 308.17 -6.95 -41.98 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.48 Total: -0.25 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.49 Total: -6.05 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.45 Total: -36.71 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.04 -6.95 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273199014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.221 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds