Wall clock time and date at job start Fri Apr 10 2020 14:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09000 * 110.02281 * 54.29423 * 15 14 13 17 17 C 1.54266 * 110.03320 * 175.68907 * 15 14 13 18 18 C 1.54893 * 104.19436 * 142.89166 * 17 15 14 19 19 C 1.54885 * 102.75049 * 322.05881 * 18 17 15 20 20 C 1.53878 * 110.03272 * 292.90336 * 15 14 13 21 21 F 1.39903 * 110.03006 * 0.02562 * 20 15 14 22 22 F 1.39901 * 110.03188 * 121.42826 * 20 15 14 23 23 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 25 25 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.09002 * 110.48796 * 261.57016 * 17 15 14 30 30 H 1.08993 * 110.48889 * 24.21580 * 17 15 14 31 31 H 1.09004 * 110.75515 * 80.37277 * 18 17 15 32 32 H 1.09001 * 110.75492 * 203.73601 * 18 17 15 33 33 H 1.09005 * 110.48560 * 156.62522 * 19 18 17 34 34 H 1.09001 * 110.48412 * 279.26255 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 1 4.1733 -8.4840 0.8234 17 6 2.9786 -10.1457 0.0944 18 6 3.9300 -10.9600 -0.8171 19 6 4.1799 -9.9931 -2.0010 20 6 4.2672 -8.6006 -1.3405 21 9 3.6720 -7.6399 -2.1652 22 9 5.6043 -8.2653 -1.1019 23 1 -0.4849 0.8400 -0.0004 24 1 3.1246 -3.7313 0.8905 25 1 3.1246 -3.7313 -0.8894 26 1 3.8011 -6.1834 0.0015 27 1 1.7226 -7.8789 0.8860 28 1 1.7214 -7.8714 -0.8939 29 1 3.0390 -10.5010 1.1232 30 1 1.9539 -10.2074 -0.2718 31 1 4.8622 -11.1855 -0.2991 32 1 3.4468 -11.8747 -1.1607 33 1 5.1171 -10.2370 -2.5015 34 1 3.3492 -10.0301 -2.7056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273199014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:17 Heat of formation + Delta-G solvation = -176.719161 kcal Electronic energy + Delta-G solvation = -19567.289319 eV Core-core repulsion = 16067.386628 eV Total energy + Delta-G solvation = -3499.902691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.95786 -48.02137 -40.68093 -38.61892 -35.64515 -34.59679 -32.06351 -30.12480 -28.67971 -27.68708 -25.51457 -22.48123 -21.54522 -21.34427 -19.85724 -18.75887 -18.16663 -17.59761 -17.20619 -17.05171 -16.88762 -16.44593 -15.88048 -15.37620 -15.20915 -14.96997 -14.64029 -14.47866 -14.46781 -14.17351 -13.76861 -13.36580 -13.18626 -12.98276 -12.87253 -12.66046 -12.57560 -12.33971 -12.15687 -11.75449 -11.62178 -11.56796 -11.14046 -10.99639 -10.31279 -10.17745 -8.68595 -8.35662 -6.14336 1.24863 1.43451 1.45090 1.55361 1.57451 2.21967 2.27062 2.70748 2.94210 2.98171 3.17214 3.27947 3.33002 3.85429 3.95160 4.08261 4.17929 4.25602 4.26742 4.27650 4.46924 4.53013 4.63052 4.69709 4.82826 5.03231 5.08825 5.14133 5.31986 5.35851 5.40221 6.18443 6.38709 7.05169 7.16732 8.73487 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.003456 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.172560 B = 8099.164333 C = 8504.285805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.082 0.918 9 S -0.146 6.146 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.715 5.715 14 C 0.127 3.873 15 C -0.135 4.135 16 H 0.118 0.882 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.161 4.161 20 C 0.264 3.736 21 F -0.211 7.211 22 F -0.207 7.207 23 H 0.272 0.728 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.409 0.591 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 -24.056 -0.651 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.698 4.698 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.368 5.368 14 C 0.003 3.997 15 C -0.154 4.154 16 H 0.137 0.863 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.199 4.199 20 C 0.228 3.772 21 F -0.192 7.192 22 F -0.188 7.188 23 H 0.081 0.919 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.245 0.755 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.462 -24.283 -0.666 26.449 hybrid contribution 2.025 1.783 -0.239 2.708 sum 12.486 -22.500 -0.905 25.748 Atomic orbital electron populations 1.70173 1.07960 1.28749 1.47819 1.26141 0.95996 1.03319 0.93617 0.84990 0.77812 0.75605 0.79497 1.18759 1.20202 1.18583 1.23186 0.95353 0.92087 1.59200 0.90034 1.85507 1.10289 0.99068 1.97050 1.23378 1.03704 0.94597 1.06564 1.19995 0.86192 0.86583 0.75029 1.90680 1.17129 1.86088 1.50208 1.45775 1.09991 1.05444 1.75572 1.21418 0.96039 0.79283 1.02915 1.23123 0.97299 0.98904 0.96082 0.86349 1.22416 1.00320 0.89322 1.02849 1.22504 1.00625 0.97989 0.93994 1.23440 1.05825 0.90260 1.00327 1.22418 0.75405 0.88013 0.91340 1.93028 1.83627 1.67790 1.74728 1.93003 1.36786 1.93921 1.95094 0.91905 0.87191 0.87781 0.75478 0.90109 0.91863 0.87887 0.89759 0.89519 0.87841 0.88264 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.55 -32.25 9.50 67.96 0.65 -31.60 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.52 6.16 71.24 0.44 -5.08 16 11 C 0.54 20.97 7.85 87.66 0.69 21.66 16 12 O -0.56 -26.88 15.86 -3.04 -0.05 -26.93 16 13 N -0.71 -19.90 4.63 -463.07 -2.14 -22.05 16 14 C 0.13 2.85 4.39 86.38 0.38 3.23 16 15 C -0.13 -1.95 2.82 -10.07 -0.03 -1.98 16 16 H 0.12 1.48 8.02 -2.39 -0.02 1.46 16 17 C -0.11 -0.94 6.36 31.67 0.20 -0.74 16 18 C -0.11 -0.73 6.91 31.89 0.22 -0.51 16 19 C -0.16 -1.79 6.41 31.70 0.20 -1.59 16 20 C 0.26 4.63 2.31 31.35 0.07 4.71 16 21 F -0.21 -5.25 14.73 44.97 0.66 -4.59 16 22 F -0.21 -4.14 17.04 44.97 0.77 -3.37 16 23 H 0.27 15.71 8.31 -92.72 -0.77 14.94 16 24 H 0.11 4.15 8.14 -2.40 -0.02 4.13 16 25 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 26 H 0.41 9.48 8.30 -92.71 -0.77 8.71 16 27 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.06 1.62 7.66 -2.39 -0.02 1.60 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.74 7.85 -2.39 -0.02 0.72 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.10 0.98 8.11 -2.38 -0.02 0.96 16 34 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 Total: -1.00 -77.93 308.17 4.02 -73.91 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.35 Total: 13.29 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 3.29 Total: -10.62 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.86 Total: -78.49 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.05 Total: -26.93 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 1.43 Total: -7.96 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -77.93 4.02 -73.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273199014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.812 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds