Wall clock time and date at job start Fri Apr 10 2020 14:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47302 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00736 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.02072 * 305.70149 * 15 14 13 17 17 C 1.54272 * 110.03601 * 184.30867 * 15 14 13 18 18 C 1.54880 * 104.19859 * 217.10446 * 17 15 14 19 19 C 1.54890 * 102.74819 * 37.94087 * 18 17 15 20 20 C 1.53874 * 110.03378 * 67.09381 * 15 14 13 21 21 F 1.39905 * 110.03260 * 238.57157 * 20 15 14 22 22 F 1.39899 * 110.02923 * 359.97438 * 20 15 14 23 23 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 25 25 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 26 26 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 27 27 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 28 28 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 29 29 H 1.09000 * 110.48233 * 335.78731 * 17 15 14 30 30 H 1.08998 * 110.48338 * 98.28986 * 17 15 14 31 31 H 1.08998 * 110.75704 * 156.25460 * 18 17 15 32 32 H 1.08999 * 110.75815 * 279.44532 * 18 17 15 33 33 H 1.09003 * 110.48488 * 80.73641 * 19 18 17 34 34 H 1.09001 * 110.49091 * 203.37492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 6 3.5025 -8.6985 0.0131 16 1 4.1720 -8.4842 -0.8200 17 6 2.9783 -10.1458 -0.0890 18 6 3.9309 -10.9599 0.8213 19 6 4.1824 -9.9927 2.0046 20 6 4.2688 -8.6003 1.3438 21 9 5.6057 -8.2652 1.1034 22 9 3.6748 -7.6395 2.1691 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1834 0.0019 27 1 1.7221 -7.8710 0.9002 28 1 1.7216 -7.8793 -0.8797 29 1 1.9540 -10.2073 0.2786 30 1 3.0352 -10.5004 -1.1181 31 1 3.4481 -11.8744 1.1658 32 1 4.8610 -11.1883 0.3010 33 1 3.3526 -10.0295 2.7105 34 1 5.1201 -10.2364 2.5040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273199015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:20 Heat of formation + Delta-G solvation = -153.250433 kcal Electronic energy + Delta-G solvation = -19565.675636 eV Core-core repulsion = 16066.790625 eV Total energy + Delta-G solvation = -3498.885011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.13601 -47.17472 -39.25586 -37.86295 -34.42608 -32.39773 -30.89614 -28.87985 -28.04169 -25.49865 -24.52536 -21.82355 -20.64017 -20.17491 -18.02955 -17.85067 -17.11472 -16.35450 -16.11273 -15.95301 -15.14494 -14.77618 -14.66051 -14.45410 -14.16590 -13.90419 -13.56141 -13.31828 -13.04116 -12.93626 -12.59079 -12.26713 -12.01592 -11.78384 -11.71579 -11.63316 -11.18914 -11.03662 -10.99266 -10.86376 -10.73087 -9.78522 -9.37337 -9.04089 -8.86472 -8.20138 -6.46369 -6.18670 -3.88824 3.03707 3.14847 3.24765 3.29706 3.33860 3.40256 3.54445 3.67188 3.88898 4.01456 4.23567 4.50675 4.62518 4.73631 4.85925 4.91522 4.97638 5.16419 5.20371 5.25802 5.40887 5.45965 5.46767 5.59272 5.66058 5.72983 5.86705 5.94862 6.19558 6.60405 7.62763 7.71393 8.38486 8.64479 9.26645 10.88801 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.040082 B = 0.003456 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.405206 B = 8099.896406 C = 8505.495233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.130 3.870 15 C -0.145 4.145 16 H 0.107 0.893 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.162 4.162 20 C 0.279 3.721 21 F -0.199 7.199 22 F -0.187 7.187 23 H 0.268 0.732 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.397 0.603 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.440 -22.935 1.019 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.006 3.994 15 C -0.164 4.164 16 H 0.125 0.875 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.200 4.200 20 C 0.243 3.757 21 F -0.179 7.179 22 F -0.168 7.168 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.231 0.769 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.276 -23.118 1.044 24.578 hybrid contribution 2.632 1.555 0.097 3.059 sum 10.909 -21.563 1.141 24.192 Atomic orbital electron populations 1.70023 1.05945 1.27413 1.46967 1.24992 0.95031 0.99016 0.94564 0.86163 0.79428 0.81555 0.78325 1.20285 1.20764 1.19685 1.22879 0.94939 0.91681 1.58828 0.90929 1.85361 1.04982 0.96290 1.96714 1.23529 1.06547 0.95341 1.04964 1.20263 0.86436 0.86223 0.74967 1.90694 1.15306 1.85622 1.47661 1.45959 1.09937 1.05277 1.77979 1.21226 0.94452 0.80369 1.03347 1.23127 0.98721 0.98214 0.96344 0.87504 1.22355 1.00150 0.91341 1.01401 1.22472 1.00296 0.98023 0.95179 1.23388 1.05316 0.91780 0.99536 1.21871 0.75909 0.87252 0.90701 1.93025 1.36177 1.93753 1.94993 1.93075 1.83255 1.66587 1.73866 0.92214 0.89170 0.89251 0.76930 0.90616 0.90452 0.89846 0.89735 0.89770 0.90414 0.88200 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.57 9.50 30.94 0.29 -15.27 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.24 6.16 36.01 0.22 -3.01 16 11 C 0.53 10.46 7.85 -10.98 -0.09 10.37 16 12 O -0.52 -12.09 15.86 5.55 0.09 -12.00 16 13 N -0.74 -10.61 4.63 -60.30 -0.28 -10.89 16 14 C 0.13 1.53 4.39 -4.04 -0.02 1.51 16 15 C -0.14 -1.20 2.82 -89.50 -0.25 -1.45 16 16 H 0.11 0.81 8.02 -51.93 -0.42 0.40 16 17 C -0.11 -0.65 6.36 -25.07 -0.16 -0.81 16 18 C -0.12 -0.59 6.91 -24.74 -0.17 -0.76 16 19 C -0.16 -1.08 6.41 -25.02 -0.16 -1.24 16 20 C 0.28 2.66 2.31 -25.56 -0.06 2.60 16 21 F -0.20 -2.14 17.04 2.25 0.04 -2.10 16 22 F -0.19 -2.38 14.73 2.25 0.03 -2.35 16 23 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.09 1.80 8.14 -51.91 -0.42 1.37 16 25 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 26 H 0.40 4.92 8.30 -40.82 -0.34 4.58 16 27 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -35.05 308.17 -6.95 -41.99 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.48 Total: -0.30 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.49 Total: -6.03 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.45 Total: -36.69 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.05 -6.95 -41.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273199015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.256 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds