Wall clock time and date at job start Fri Apr 10 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00564 * 2 1 4 4 H 1.48498 * 109.47194 * 270.00497 * 3 2 1 5 5 H 1.48504 * 109.46916 * 29.99909 * 3 2 1 6 6 H 1.48499 * 109.47410 * 149.99905 * 3 2 1 7 7 C 1.37882 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47210 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47293 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54189 * 68.37430 * 11 10 9 13 13 O 1.42099 * 110.54203 * 291.62169 * 11 10 9 14 14 N 1.65608 * 104.44917 * 179.97438 * 11 10 9 15 15 C 1.47061 * 136.05749 * 269.63087 * 14 11 10 16 16 C 1.53244 * 88.08260 * 207.20220 * 15 14 11 17 17 C 1.52999 * 114.32429 * 220.47107 * 16 15 14 18 18 O 1.42905 * 109.46954 * 273.75550 * 17 16 15 19 19 C 1.52992 * 114.19477 * 87.72677 * 16 15 14 20 20 O 1.42901 * 109.47048 * 86.30471 * 19 16 15 21 21 C 1.47069 * 136.05426 * 89.99784 * 14 11 10 22 22 H 0.97001 * 119.99602 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47782 * 59.99535 * 9 7 2 24 24 H 1.09001 * 109.46939 * 299.99641 * 9 7 2 25 25 H 1.09001 * 109.47069 * 59.99171 * 10 9 7 26 26 H 1.09001 * 109.46935 * 299.99716 * 10 9 7 27 27 H 1.09001 * 113.46984 * 321.93537 * 15 14 11 28 28 H 1.09003 * 113.46580 * 92.37415 * 15 14 11 29 29 H 1.08994 * 109.47144 * 33.75749 * 17 16 15 30 30 H 1.08997 * 109.46635 * 153.76277 * 17 16 15 31 31 H 0.96699 * 113.99435 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.46969 * 206.30301 * 19 16 15 33 33 H 1.09000 * 109.47468 * 326.30471 * 19 16 15 34 34 H 0.96700 * 114.00129 * 179.97438 * 20 19 16 35 35 H 1.08996 * 113.46828 * 267.62370 * 21 14 11 36 36 H 1.08994 * 113.46693 * 38.00959 * 21 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 16 1.3379 -5.2331 0.0013 12 8 0.6634 -5.4200 -1.2354 13 8 0.6643 -5.4193 1.2386 14 7 2.5200 -6.3929 0.0005 15 6 3.2705 -7.1392 -1.0205 16 6 3.4339 -8.2704 0.0004 17 6 4.8166 -8.9255 -0.0008 18 8 4.8511 -9.9634 -0.9826 19 6 2.2856 -9.2814 0.0052 20 8 2.5341 -10.2891 -0.9770 21 6 3.2766 -7.1344 1.0206 22 1 -0.4849 0.8401 0.0004 23 1 0.6244 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.8717 -3.6045 0.8904 26 1 2.8716 -3.6045 -0.8895 27 1 2.6675 -7.4197 -1.8841 28 1 4.2123 -6.6664 -1.2990 29 1 5.5730 -8.1770 -0.2366 30 1 5.0187 -9.3491 0.9829 31 1 5.6999 -10.4231 -1.0391 32 1 2.2127 -9.7437 0.9897 33 1 1.3509 -8.7708 -0.2265 34 1 1.8451 -10.9656 -1.0295 35 1 4.2200 -6.6603 1.2913 36 1 2.6790 -7.4098 1.8895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475680512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:35 Heat of formation + Delta-G solvation = -134.444546 kcal Electronic energy + Delta-G solvation = -20390.930305 eV Core-core repulsion = 17003.948294 eV Total energy + Delta-G solvation = -3386.982011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.34394 -36.58479 -36.52452 -36.05022 -35.45420 -33.90109 -31.17116 -30.52347 -26.21109 -26.12567 -25.68061 -24.90413 -21.53044 -19.19139 -18.42063 -17.73536 -17.46822 -16.96143 -16.49896 -15.98714 -15.91178 -15.28746 -15.10267 -14.56796 -14.03705 -13.82054 -13.31156 -13.24852 -13.19052 -12.68145 -12.52721 -12.24082 -11.77464 -11.62127 -11.56261 -11.29521 -11.09406 -10.98009 -10.86534 -10.74560 -10.43875 -10.39533 -9.96203 -9.87695 -9.80973 -9.40051 -8.84205 -8.51818 -6.13816 -4.19578 0.69175 2.93596 3.25066 3.31141 3.33889 3.61408 4.07992 4.27811 4.33064 4.40176 4.43774 4.75580 4.95356 5.03569 5.20950 5.21237 5.24898 5.32945 5.36700 5.41053 5.48342 5.56689 5.71242 5.72401 5.94191 6.05741 6.43067 6.47308 7.27951 7.34094 7.58743 7.66160 7.78992 8.15978 8.83689 9.45189 10.97265 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.037124 B = 0.003921 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.057728 B = 7139.666688 C = 7515.607022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.591 4.591 11 S 2.614 3.386 12 O -0.958 6.958 13 O -0.960 6.960 14 N -1.046 6.046 15 C 0.138 3.862 16 C -0.097 4.097 17 C 0.098 3.902 18 O -0.539 6.539 19 C 0.107 3.893 20 O -0.541 6.541 21 C 0.140 3.860 22 H 0.265 0.735 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.366 0.634 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.368 0.632 35 H 0.090 0.910 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -19.353 1.252 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.724 4.724 11 S 2.714 3.286 12 O -0.949 6.949 13 O -0.951 6.951 14 N -0.882 5.882 15 C 0.012 3.988 16 C -0.099 4.099 17 C 0.019 3.981 18 O -0.342 6.342 19 C 0.028 3.972 20 O -0.344 6.344 21 C 0.014 3.986 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.211 0.789 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.213 0.787 35 H 0.108 0.892 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.215 -18.691 1.068 20.867 hybrid contribution 1.113 1.032 0.283 1.544 sum 10.328 -17.659 1.351 20.502 Atomic orbital electron populations 1.69955 1.06132 1.27226 1.49521 1.25074 0.94984 0.99566 0.94868 0.86453 0.79683 0.82792 0.78252 1.20440 1.20971 1.19771 1.21000 0.93047 0.89757 1.52223 0.92067 1.18975 0.92731 0.90608 0.98865 1.30528 1.13754 1.18199 1.09925 1.05121 0.74035 0.75452 0.74009 1.93543 1.70703 1.85145 1.45466 1.93532 1.70808 1.85230 1.45502 1.60492 1.55424 1.55792 1.16539 1.22484 0.95782 0.88028 0.92485 1.22266 0.95460 0.93524 0.98683 1.21875 0.94491 0.89987 0.91737 1.86823 1.37743 1.50679 1.58945 1.21614 0.95369 0.88649 0.91528 1.86737 1.49355 1.39322 1.59000 1.22406 0.96142 0.88026 0.92075 0.92501 0.94847 0.94838 0.86351 0.86318 0.89642 0.89821 0.93408 0.93605 0.78902 0.93556 0.93310 0.78670 0.89245 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.59 6.12 37.16 0.23 -11.36 16 11 S 2.61 48.73 5.96 -107.50 -0.64 48.09 16 12 O -0.96 -20.75 18.07 -57.54 -1.04 -21.79 16 13 O -0.96 -20.30 18.07 -57.54 -1.04 -21.34 16 14 N -1.05 -14.63 3.92 -125.27 -0.49 -15.12 16 15 C 0.14 1.66 7.78 -8.64 -0.07 1.59 16 16 C -0.10 -1.00 1.24 -154.13 -0.19 -1.19 16 17 C 0.10 0.80 6.63 37.16 0.25 1.04 16 18 O -0.54 -5.01 11.02 -58.99 -0.65 -5.66 16 19 C 0.11 1.16 6.55 37.15 0.24 1.40 16 20 O -0.54 -5.89 11.02 -58.99 -0.65 -6.54 16 21 C 0.14 1.45 7.86 -8.50 -0.07 1.39 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 26 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 27 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 28 H 0.08 0.82 7.94 -51.93 -0.41 0.41 16 29 H 0.05 0.32 7.90 -51.93 -0.41 -0.09 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.37 1.80 9.12 45.56 0.42 2.22 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.60 7.93 -51.93 -0.41 0.19 16 34 H 0.37 2.53 9.12 45.56 0.42 2.95 16 35 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -37.76 319.16 -7.89 -45.65 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -3.74 Total: 1.46 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.16 Total: -19.90 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.25 Total: -41.06 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -3.38 Total: -55.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 48.73 SS G_CDS: -0.64 Total: 48.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -37.76 -7.89 -45.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475680512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.798 kcal (2) G-P(sol) polarization free energy of solvation -37.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds