Wall clock time and date at job start Fri Apr 10 2020 14:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99427 * 2 1 4 4 H 1.48505 * 109.46686 * 269.99922 * 3 2 1 5 5 H 1.48490 * 109.47551 * 29.99876 * 3 2 1 6 6 H 1.48500 * 109.46775 * 150.00121 * 3 2 1 7 7 C 1.37873 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00145 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47220 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47059 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34668 * 117.00102 * 179.97438 * 12 11 10 14 14 O 1.21415 * 119.99727 * 0.02562 * 13 12 11 15 15 C 1.48230 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.32474 * 119.80601 * 354.24186 * 15 13 12 17 17 C 1.31632 * 121.80330 * 179.97438 * 16 15 13 18 18 C 1.38601 * 121.19381 * 359.97438 * 17 16 15 19 19 C 1.38466 * 119.46423 * 0.27277 * 18 17 16 20 20 C 1.39881 * 118.34639 * 359.49139 * 19 18 17 21 21 C 1.47880 * 120.60090 * 180.25958 * 20 19 18 22 22 O 1.21444 * 120.00496 * 124.98955 * 21 20 19 23 23 O 1.34702 * 119.99888 * 304.99321 * 21 20 19 24 24 H 0.96997 * 120.00342 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47341 * 59.99712 * 9 7 2 26 26 H 1.08999 * 109.46912 * 299.99762 * 9 7 2 27 27 H 1.08996 * 109.47475 * 59.99456 * 10 9 7 28 28 H 1.08999 * 109.46708 * 299.99549 * 10 9 7 29 29 H 1.08996 * 109.47404 * 59.99434 * 11 10 9 30 30 H 1.08999 * 109.47010 * 299.99386 * 11 10 9 31 31 H 1.08004 * 119.40018 * 180.02562 * 17 16 15 32 32 H 1.08004 * 120.26826 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.82861 * 179.72055 * 19 18 17 34 34 H 0.96696 * 117.00085 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 8 6.0358 -4.0052 0.0014 13 6 7.3708 -4.1816 0.0009 14 8 8.1104 -3.2187 0.0005 15 6 7.9375 -5.5513 0.0019 16 7 7.1324 -6.5969 0.1187 17 6 7.5930 -7.8300 0.1238 18 6 8.9493 -8.0901 0.0059 19 6 9.8374 -7.0345 -0.1139 20 6 9.3248 -5.7330 -0.1220 21 6 10.2277 -4.5692 -0.2532 22 8 10.0460 -3.7561 -1.1368 23 8 11.2518 -4.4109 0.6074 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6798 0.8911 26 1 3.8752 -0.6803 -0.8889 27 1 3.6587 -3.1501 -0.8891 28 1 3.6581 -3.1503 0.8908 29 1 5.9151 -2.1224 0.8909 30 1 5.9150 -2.1224 -0.8891 31 1 6.9015 -8.6539 0.2207 32 1 9.3110 -9.1078 0.0122 33 1 10.8991 -7.2118 -0.2025 34 1 11.8146 -3.6346 0.4821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:48 Heat of formation + Delta-G solvation = -137.634565 kcal Electronic energy + Delta-G solvation = -20649.309848 eV Core-core repulsion = 17126.745556 eV Total energy + Delta-G solvation = -3522.564292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47624 -39.91598 -39.63609 -36.69545 -36.16476 -34.08585 -33.38167 -32.33947 -31.74849 -27.81012 -26.08648 -25.08348 -23.18556 -22.17557 -21.26824 -20.24307 -18.65387 -18.20628 -17.74989 -17.25100 -16.82516 -16.48019 -16.37201 -15.58982 -15.31732 -14.70793 -14.37858 -14.18623 -13.85131 -13.72623 -13.33048 -12.81306 -12.71569 -12.36108 -11.92515 -11.80111 -11.17631 -11.03490 -10.93410 -10.71350 -10.59957 -10.42389 -10.20039 -9.96278 -9.87106 -9.76023 -9.69508 -9.21791 -8.53954 -6.04258 -4.03083 -0.16781 0.42132 1.95064 2.21847 2.45373 2.57221 3.27239 3.32434 3.39702 3.43594 3.72209 4.15828 4.26659 4.27891 4.45670 4.53354 4.83123 5.03608 5.23895 5.29060 5.34139 5.47885 5.49492 5.80938 5.89351 6.17721 6.28717 6.43212 6.61733 6.81919 7.12685 7.25192 7.36017 7.57597 7.71334 7.78927 8.52933 9.00406 9.57315 11.08943 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.003402 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.802311 B = 8228.355425 C = 9108.187092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.064 3.936 12 O -0.327 6.327 13 C 0.508 3.492 14 O -0.480 6.480 15 C 0.151 3.849 16 N -0.428 5.428 17 C 0.121 3.879 18 C -0.148 4.148 19 C -0.039 4.039 20 C -0.107 4.107 21 C 0.530 3.470 22 O -0.467 6.467 23 O -0.511 6.511 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.176 0.824 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.157 -17.879 1.168 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.093 0.907 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.009 4.009 12 O -0.242 6.242 13 C 0.349 3.651 14 O -0.367 6.367 15 C 0.013 3.987 16 N -0.139 5.139 17 C -0.038 4.038 18 C -0.168 4.168 19 C -0.065 4.065 20 C -0.110 4.110 21 C 0.369 3.631 22 O -0.351 6.351 23 O -0.324 6.324 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.193 0.807 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 22.964 -17.342 1.043 28.795 hybrid contribution 1.609 1.355 -0.185 2.112 sum 24.574 -15.987 0.858 29.329 Atomic orbital electron populations 1.69909 1.06272 1.26948 1.50958 1.25012 0.94754 0.99155 0.94488 0.86785 0.80378 0.83589 0.78609 1.20198 1.21295 1.18976 1.21058 0.89026 0.94697 1.51072 0.90737 1.19525 0.97543 0.91033 0.96695 1.21562 0.88409 1.00780 1.03056 1.23636 0.97328 0.77626 1.02318 1.86651 1.21072 1.34275 1.82160 1.20639 0.82492 0.87732 0.74275 1.90931 1.60533 1.40959 1.44249 1.20220 0.87974 0.92172 0.98374 1.67849 1.37952 0.98945 1.09111 1.23246 0.94299 0.93853 0.92370 1.22478 0.94418 1.00848 0.99071 1.21735 1.01553 0.89881 0.93289 1.19886 0.92436 0.93620 1.05094 1.20260 0.79005 0.84322 0.79498 1.90972 1.69715 1.41317 1.33138 1.84543 1.40917 1.51255 1.55699 0.92665 0.96259 0.96677 0.91379 0.91342 0.91309 0.91194 0.80674 0.82756 0.82686 0.72346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 10 C -0.10 -2.09 5.53 -26.73 -0.15 -2.23 16 11 C 0.06 1.19 5.47 37.16 0.20 1.39 16 12 O -0.33 -5.91 10.05 -40.41 -0.41 -6.32 16 13 C 0.51 8.66 7.86 34.84 0.27 8.93 16 14 O -0.48 -8.99 12.76 -27.18 -0.35 -9.34 16 15 C 0.15 2.07 6.78 -82.64 -0.56 1.51 16 16 N -0.43 -5.23 10.11 -9.51 -0.10 -5.32 16 17 C 0.12 0.88 11.17 -17.50 -0.20 0.68 16 18 C -0.15 -0.73 10.10 -39.36 -0.40 -1.13 16 19 C -0.04 -0.26 9.94 -38.88 -0.39 -0.65 16 20 C -0.11 -1.19 5.80 -104.49 -0.61 -1.79 16 21 C 0.53 6.49 6.42 34.68 0.22 6.71 16 22 O -0.47 -7.48 15.53 -27.21 -0.42 -7.90 16 23 O -0.51 -4.42 13.44 -40.50 -0.54 -4.96 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 26 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.18 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.15 0.16 8.06 -52.48 -0.42 -0.26 16 33 H 0.16 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.42 1.88 9.11 45.56 0.42 2.29 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -37.36 309.22 -6.09 -43.44 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -2.90 Total: -3.81 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.14 Total: -0.47 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.68 Total: -32.68 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.72 Total: -28.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.36 -6.09 -43.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.193 kcal (2) G-P(sol) polarization free energy of solvation -37.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds