Wall clock time and date at job start Fri Apr 10 2020 14:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99427 * 2 1 4 4 H 1.48505 * 109.46686 * 269.99922 * 3 2 1 5 5 H 1.48490 * 109.47551 * 29.99876 * 3 2 1 6 6 H 1.48500 * 109.46775 * 150.00121 * 3 2 1 7 7 C 1.37873 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00145 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47220 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47059 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34668 * 117.00102 * 179.97438 * 12 11 10 14 14 O 1.21415 * 119.99727 * 0.02562 * 13 12 11 15 15 C 1.48230 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.32474 * 119.80601 * 354.24186 * 15 13 12 17 17 C 1.31632 * 121.80330 * 179.97438 * 16 15 13 18 18 C 1.38601 * 121.19381 * 359.97438 * 17 16 15 19 19 C 1.38466 * 119.46423 * 0.27277 * 18 17 16 20 20 C 1.39881 * 118.34639 * 359.49139 * 19 18 17 21 21 C 1.47880 * 120.60090 * 180.25958 * 20 19 18 22 22 O 1.21444 * 120.00496 * 124.98955 * 21 20 19 23 23 O 1.34702 * 119.99888 * 304.99321 * 21 20 19 24 24 H 0.96997 * 120.00342 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47341 * 59.99712 * 9 7 2 26 26 H 1.08999 * 109.46912 * 299.99762 * 9 7 2 27 27 H 1.08996 * 109.47475 * 59.99456 * 10 9 7 28 28 H 1.08999 * 109.46708 * 299.99549 * 10 9 7 29 29 H 1.08996 * 109.47404 * 59.99434 * 11 10 9 30 30 H 1.08999 * 109.47010 * 299.99386 * 11 10 9 31 31 H 1.08004 * 119.40018 * 180.02562 * 17 16 15 32 32 H 1.08004 * 120.26826 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.82861 * 179.72055 * 19 18 17 34 34 H 0.96696 * 117.00085 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 8 6.0358 -4.0052 0.0014 13 6 7.3708 -4.1816 0.0009 14 8 8.1104 -3.2187 0.0005 15 6 7.9375 -5.5513 0.0019 16 7 7.1324 -6.5969 0.1187 17 6 7.5930 -7.8300 0.1238 18 6 8.9493 -8.0901 0.0059 19 6 9.8374 -7.0345 -0.1139 20 6 9.3248 -5.7330 -0.1220 21 6 10.2277 -4.5692 -0.2532 22 8 10.0460 -3.7561 -1.1368 23 8 11.2518 -4.4109 0.6074 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6798 0.8911 26 1 3.8752 -0.6803 -0.8889 27 1 3.6587 -3.1501 -0.8891 28 1 3.6581 -3.1503 0.8908 29 1 5.9151 -2.1224 0.8909 30 1 5.9150 -2.1224 -0.8891 31 1 6.9015 -8.6539 0.2207 32 1 9.3110 -9.1078 0.0122 33 1 10.8991 -7.2118 -0.2025 34 1 11.8146 -3.6346 0.4821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:47 Heat of formation + Delta-G solvation = -164.758109 kcal Electronic energy + Delta-G solvation = -20650.486013 eV Core-core repulsion = 17126.745556 eV Total energy + Delta-G solvation = -3523.740457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.37554 -41.05622 -40.46380 -38.01305 -37.08735 -35.98686 -34.14497 -33.83616 -32.98930 -29.60571 -27.10617 -25.85517 -24.80038 -23.13140 -22.32324 -22.05426 -19.56685 -19.19840 -19.04352 -18.55220 -18.04385 -17.84079 -17.52950 -16.39536 -16.25845 -16.10296 -15.95013 -15.19643 -14.92280 -14.82185 -14.57755 -14.30251 -13.96854 -13.82916 -13.52341 -12.90218 -12.72852 -12.65717 -12.26438 -12.10308 -11.99041 -11.78468 -11.66772 -11.46631 -11.39813 -11.24246 -10.82702 -10.79274 -10.52566 -8.31853 -6.37045 -0.94837 -0.16493 1.08156 1.16585 1.32077 1.35556 1.36894 1.48915 1.83821 2.34240 2.53635 2.88402 3.02943 3.44545 3.61054 3.79471 3.85296 3.92594 3.94607 4.22105 4.31479 4.42864 4.62271 4.68326 4.76846 4.87416 4.91009 5.13059 5.35898 5.40218 5.44658 5.47703 5.59325 6.23232 6.29012 6.62890 6.70328 6.84125 7.27288 8.84784 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.003402 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.802311 B = 8228.355425 C = 9108.187092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.036 0.964 9 C -0.008 4.008 10 C -0.090 4.090 11 C 0.072 3.928 12 O -0.337 6.337 13 C 0.501 3.499 14 O -0.507 6.507 15 C 0.114 3.886 16 N -0.464 5.464 17 C 0.115 3.885 18 C -0.112 4.112 19 C -0.032 4.032 20 C -0.120 4.120 21 C 0.533 3.467 22 O -0.517 6.517 23 O -0.499 6.499 24 H 0.268 0.732 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.210 0.790 32 H 0.209 0.791 33 H 0.193 0.807 34 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.130 -19.757 1.532 33.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.045 4.045 10 C -0.128 4.128 11 C -0.001 4.001 12 O -0.252 6.252 13 C 0.344 3.656 14 O -0.395 6.395 15 C -0.023 4.023 16 N -0.176 5.176 17 C -0.044 4.044 18 C -0.130 4.130 19 C -0.057 4.057 20 C -0.124 4.124 21 C 0.374 3.626 22 O -0.405 6.405 23 O -0.313 6.313 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.227 0.773 32 H 0.226 0.774 33 H 0.210 0.790 34 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 25.973 -19.242 1.427 32.356 hybrid contribution 0.713 1.684 -0.262 1.848 sum 26.687 -17.558 1.164 31.966 Atomic orbital electron populations 1.70056 1.08235 1.28309 1.52304 1.25992 0.95658 1.03476 0.93951 0.85662 0.79507 0.78222 0.79319 1.19097 1.20622 1.17079 1.21378 0.91556 0.93459 1.50888 0.94590 1.19443 0.94466 0.93395 0.97243 1.21313 0.90189 0.98612 1.02659 1.23322 0.95579 0.78520 1.02661 1.86630 1.22520 1.33415 1.82660 1.21427 0.81523 0.89511 0.73142 1.90896 1.60644 1.42294 1.45661 1.19815 0.89035 0.90790 1.02684 1.67734 1.38973 1.00384 1.10490 1.23983 0.96508 0.92756 0.91118 1.23076 0.92808 1.02771 0.94391 1.22268 1.03718 0.88036 0.91697 1.20029 0.91156 0.95228 1.05998 1.20585 0.79141 0.84048 0.78787 1.90944 1.71091 1.43178 1.35286 1.84509 1.40241 1.52180 1.54362 0.92314 0.95478 0.95782 0.91927 0.91690 0.90740 0.91114 0.77318 0.77361 0.79010 0.70380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 45.30 27.47 68.60 1.88 47.19 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.82 5.53 30.60 0.17 -3.65 16 11 C 0.07 2.74 5.47 71.98 0.39 3.13 16 12 O -0.34 -12.60 10.05 -55.77 -0.56 -13.16 16 13 C 0.50 17.70 7.86 70.48 0.55 18.25 16 14 O -0.51 -19.70 12.76 27.74 0.35 -19.35 16 15 C 0.11 3.11 6.78 42.25 0.29 3.40 16 16 N -0.46 -10.92 10.11 -184.00 -1.86 -12.78 16 17 C 0.11 1.28 11.17 84.81 0.95 2.22 16 18 C -0.11 -0.51 10.10 22.41 0.23 -0.28 16 19 C -0.03 -0.30 9.94 22.72 0.23 -0.07 16 20 C -0.12 -2.52 5.80 -19.78 -0.11 -2.63 16 21 C 0.53 12.83 6.42 70.38 0.45 13.28 16 22 O -0.52 -17.01 15.53 27.65 0.43 -16.58 16 23 O -0.50 -7.90 13.44 -56.11 -0.75 -8.66 16 24 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 26 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 27 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.21 0.71 8.06 -2.91 -0.02 0.68 16 32 H 0.21 -1.22 8.06 -2.91 -0.02 -1.24 16 33 H 0.19 0.32 8.06 -2.91 -0.02 0.29 16 34 H 0.43 3.39 9.11 -74.06 -0.67 2.71 16 Total: -1.00 -86.38 309.22 4.18 -82.20 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: 0.41 Total: -1.21 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 3.97 Total: 2.65 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.56 Total: -73.07 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.53 Total: -57.75 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.19 kcal Total: -86.38 4.18 -82.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.554 kcal (2) G-P(sol) polarization free energy of solvation -86.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds