Wall clock time and date at job start Fri Apr 10 2020 14:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.76207 * 125.87515 * 2 1 4 4 C 1.76112 * 90.01722 * 179.97438 * 3 2 1 5 5 N 1.38561 * 125.32250 * 179.97438 * 4 3 2 6 6 N 1.29768 * 109.34851 * 359.75614 * 4 3 2 7 7 C 1.32632 * 116.94505 * 0.44887 * 6 4 3 8 8 C 1.48489 * 122.28389 * 179.79124 * 7 6 4 9 9 C 1.36458 * 126.89715 * 334.71628 * 8 7 6 10 10 N 1.35353 * 106.02618 * 180.02562 * 9 8 7 11 11 C 1.46500 * 125.76941 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47344 * 125.01974 * 11 10 9 13 13 C 1.50696 * 109.46906 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00386 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99592 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00291 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99827 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46819 * 60.00118 * 17 15 13 19 19 H 1.48501 * 109.46895 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47264 * 300.00441 * 17 15 13 21 21 N 1.28652 * 108.46432 * 359.97438 * 10 9 8 22 22 N 1.28614 * 110.48856 * 0.02562 * 21 10 9 23 23 H 1.09000 * 109.47187 * 270.02793 * 1 2 3 24 24 H 1.09004 * 109.46827 * 30.02445 * 1 2 3 25 25 H 1.08994 * 109.47765 * 150.02382 * 1 2 3 26 26 H 0.96993 * 120.00531 * 359.97438 * 5 4 3 27 27 H 0.97005 * 119.99668 * 179.97438 * 5 4 3 28 28 H 1.07998 * 126.98674 * 0.02562 * 9 8 7 29 29 H 1.08998 * 109.47230 * 245.02277 * 11 10 9 30 30 H 1.09002 * 109.46989 * 5.01978 * 11 10 9 31 31 H 1.09001 * 109.46914 * 299.99885 * 12 11 10 32 32 H 1.08992 * 109.47024 * 60.00049 * 12 11 10 33 33 H 0.96998 * 120.00445 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5396 1.4278 0.0000 4 6 3.9670 0.3962 0.0008 5 7 5.2785 0.8432 0.0006 6 7 3.5982 -0.8480 0.0062 7 6 2.2938 -1.0883 0.0006 8 6 1.7413 -2.4665 0.0012 9 6 2.3545 -3.5952 -0.4593 10 7 1.4779 -4.6063 -0.2556 11 6 1.7000 -6.0138 -0.5960 12 6 1.4894 -6.8788 0.6483 13 6 1.7185 -8.3266 0.2982 14 1 1.9878 -8.6021 -0.7108 15 6 1.5853 -9.2993 1.2663 16 7 1.2589 -8.9636 2.4952 17 14 1.8686 -11.0940 0.8322 18 1 3.2569 -11.2698 0.3354 19 1 1.6643 -11.9335 2.0399 20 1 0.9091 -11.5052 -0.2241 21 7 0.4168 -4.1224 0.2874 22 7 0.5360 -2.8529 0.4556 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5134 26 1 5.4667 1.7947 -0.0003 27 1 6.0086 0.2044 0.0015 28 1 3.3390 -3.6672 -0.8973 29 1 0.9961 -6.3155 -1.3716 30 1 2.7192 -6.1431 -0.9602 31 1 2.1934 -6.5772 1.4239 32 1 0.4703 -6.7496 1.0124 33 1 1.1648 -9.6480 3.1762 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887384117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:37 Heat of formation + Delta-G solvation = 132.234364 kcal Electronic energy + Delta-G solvation = -18323.515154 eV Core-core repulsion = 15319.991631 eV Total energy + Delta-G solvation = -3003.523524 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.73020 -39.51238 -35.46505 -34.75559 -32.87046 -31.73510 -30.72295 -29.82948 -26.28462 -25.50526 -23.90508 -22.35233 -22.22678 -20.59209 -19.27277 -18.53782 -17.04906 -16.29690 -16.08980 -15.88163 -15.75449 -14.89253 -14.72874 -14.50121 -13.96025 -13.38241 -12.99951 -12.92076 -12.58061 -12.36444 -11.76018 -11.52114 -11.19985 -11.08948 -10.95030 -10.82277 -10.56304 -10.29115 -10.02914 -9.68357 -9.46018 -9.39437 -9.25559 -8.87099 -8.51209 -7.65492 -6.15295 -4.22299 0.84437 0.95772 1.62027 2.04482 2.51750 2.92679 3.14381 3.25505 3.31049 3.32592 3.49100 4.33512 4.39578 5.05601 5.09778 5.20369 5.20945 5.33188 5.58698 5.77296 5.79184 5.87791 6.03125 6.12881 6.21727 6.33152 6.50820 6.69142 7.01419 7.02979 7.42209 7.51161 7.79540 7.89525 8.11347 8.82707 8.97416 9.43125 10.95683 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035808 B = 0.003245 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.768140 B = 8625.373372 C = 9090.670885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.214 4.214 3 S 0.043 5.957 4 C 0.345 3.655 5 N -0.818 5.818 6 N -0.530 5.530 7 C 0.188 3.812 8 C 0.024 3.976 9 C -0.017 4.017 10 N -0.270 5.270 11 C 0.111 3.889 12 C 0.015 3.985 13 C -0.533 4.533 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 N -0.069 5.069 22 N -0.265 5.265 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.414 0.586 27 H 0.413 0.587 28 H 0.189 0.811 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.024 0.976 32 H 0.038 0.962 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 20.817 -7.168 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.338 4.338 3 S 0.289 5.711 4 C -0.030 4.030 5 N -0.372 5.372 6 N -0.255 5.255 7 C 0.059 3.941 8 C -0.116 4.116 9 C -0.171 4.171 10 N -0.062 5.062 11 C -0.007 4.007 12 C -0.023 4.023 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.524 5.524 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.049 5.049 22 N -0.133 5.133 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.245 0.755 27 H 0.245 0.755 28 H 0.206 0.794 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.879 21.009 -6.432 22.506 hybrid contribution 1.566 -1.576 -0.520 2.282 sum 6.445 19.433 -6.952 21.622 Atomic orbital electron populations 1.20155 0.86204 1.02723 1.03107 1.25098 1.01079 0.91963 1.15645 1.84776 0.98530 1.10816 1.76933 1.23933 0.90815 0.90112 0.98113 1.41442 1.01529 1.10557 1.83628 1.66167 1.16307 1.16704 1.26287 1.16646 0.85591 0.90353 1.01556 1.19191 0.93699 0.91285 1.07436 1.23553 0.99111 0.87073 1.07353 1.47891 1.10420 1.10942 1.36940 1.22791 1.02837 0.72208 1.02913 1.19407 0.99400 0.93278 0.90209 1.20900 1.49382 0.90556 0.96361 0.92131 1.24999 0.94699 0.99474 0.94850 1.69963 1.46536 1.34014 1.01838 0.86536 0.78808 0.84054 0.77909 1.20080 1.21119 1.20005 1.78274 1.09204 1.03436 1.13958 1.75253 1.16213 1.03269 1.18515 0.90536 0.92187 0.89477 0.75549 0.75502 0.79444 0.89021 0.88641 0.95756 0.94333 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 9.62 36.01 0.35 -0.43 16 2 C -0.21 -2.97 6.59 -35.70 -0.24 -3.20 16 3 S 0.04 0.45 23.43 -107.50 -2.52 -2.07 16 4 C 0.35 3.91 8.85 -87.66 -0.78 3.14 16 5 N -0.82 -5.66 9.08 30.79 0.28 -5.38 16 6 N -0.53 -7.79 10.55 -10.47 -0.11 -7.90 16 7 C 0.19 3.01 6.62 -84.69 -0.56 2.45 16 8 C 0.02 0.43 6.69 -83.12 -0.56 -0.12 16 9 C -0.02 -0.29 11.50 -16.64 -0.19 -0.48 16 10 N -0.27 -5.25 3.44 -60.96 -0.21 -5.46 16 11 C 0.11 2.15 6.39 -4.04 -0.03 2.12 16 12 C 0.01 0.37 5.10 -27.88 -0.14 0.23 16 13 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 17 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 N -0.07 -1.47 12.88 60.35 0.78 -0.69 16 22 N -0.27 -5.28 10.63 33.06 0.35 -4.93 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 1.23 6.73 -51.93 -0.35 0.88 16 26 H 0.41 1.60 8.95 -40.82 -0.37 1.23 16 27 H 0.41 2.45 8.95 -40.82 -0.37 2.09 16 28 H 0.19 2.66 8.06 -52.49 -0.42 2.24 16 29 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.10 1.60 8.07 -51.93 -0.42 1.18 16 31 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -32.65 307.56 -7.21 -39.86 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.58 Total: 0.73 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.55 Total: -9.19 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 1.82 Total: -49.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.52 Total: -2.07 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.65 -7.21 -39.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887384117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.092 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds