Wall clock time and date at job start Fri Apr 10 2020 14:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.76207 * 125.87515 * 2 1 4 4 C 1.76112 * 90.01722 * 179.97438 * 3 2 1 5 5 N 1.38561 * 125.32250 * 179.97438 * 4 3 2 6 6 N 1.29768 * 109.34851 * 359.75614 * 4 3 2 7 7 C 1.32632 * 116.94505 * 0.44887 * 6 4 3 8 8 C 1.48489 * 122.28389 * 179.79124 * 7 6 4 9 9 C 1.36458 * 126.89715 * 334.71628 * 8 7 6 10 10 N 1.35353 * 106.02618 * 180.02562 * 9 8 7 11 11 C 1.46500 * 125.76941 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47344 * 125.01974 * 11 10 9 13 13 C 1.50696 * 109.46906 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00386 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99592 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00291 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99827 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46819 * 60.00118 * 17 15 13 19 19 H 1.48501 * 109.46895 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47264 * 300.00441 * 17 15 13 21 21 N 1.28652 * 108.46432 * 359.97438 * 10 9 8 22 22 N 1.28614 * 110.48856 * 0.02562 * 21 10 9 23 23 H 1.09000 * 109.47187 * 270.02793 * 1 2 3 24 24 H 1.09004 * 109.46827 * 30.02445 * 1 2 3 25 25 H 1.08994 * 109.47765 * 150.02382 * 1 2 3 26 26 H 0.96993 * 120.00531 * 359.97438 * 5 4 3 27 27 H 0.97005 * 119.99668 * 179.97438 * 5 4 3 28 28 H 1.07998 * 126.98674 * 0.02562 * 9 8 7 29 29 H 1.08998 * 109.47230 * 245.02277 * 11 10 9 30 30 H 1.09002 * 109.46989 * 5.01978 * 11 10 9 31 31 H 1.09001 * 109.46914 * 299.99885 * 12 11 10 32 32 H 1.08992 * 109.47024 * 60.00049 * 12 11 10 33 33 H 0.96998 * 120.00445 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5396 1.4278 0.0000 4 6 3.9670 0.3962 0.0008 5 7 5.2785 0.8432 0.0006 6 7 3.5982 -0.8480 0.0062 7 6 2.2938 -1.0883 0.0006 8 6 1.7413 -2.4665 0.0012 9 6 2.3545 -3.5952 -0.4593 10 7 1.4779 -4.6063 -0.2556 11 6 1.7000 -6.0138 -0.5960 12 6 1.4894 -6.8788 0.6483 13 6 1.7185 -8.3266 0.2982 14 1 1.9878 -8.6021 -0.7108 15 6 1.5853 -9.2993 1.2663 16 7 1.2589 -8.9636 2.4952 17 14 1.8686 -11.0940 0.8322 18 1 3.2569 -11.2698 0.3354 19 1 1.6643 -11.9335 2.0399 20 1 0.9091 -11.5052 -0.2241 21 7 0.4168 -4.1224 0.2874 22 7 0.5360 -2.8529 0.4556 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5134 26 1 5.4667 1.7947 -0.0003 27 1 6.0086 0.2044 0.0015 28 1 3.3390 -3.6672 -0.8973 29 1 0.9961 -6.3155 -1.3716 30 1 2.7192 -6.1431 -0.9602 31 1 2.1934 -6.5772 1.4239 32 1 0.4703 -6.7496 1.0124 33 1 1.1648 -9.6480 3.1762 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887384117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:36 Heat of formation + Delta-G solvation = 109.273835 kcal Electronic energy + Delta-G solvation = -18324.510798 eV Core-core repulsion = 15319.991631 eV Total energy + Delta-G solvation = -3004.519167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.18276 -40.50102 -36.84049 -35.91023 -34.74207 -32.74185 -32.11382 -31.58309 -27.48344 -27.23525 -24.96789 -24.11203 -23.48785 -22.04058 -20.38160 -19.49989 -18.85560 -17.59199 -17.46030 -17.04699 -16.73287 -16.48381 -16.01709 -15.80861 -15.35519 -15.01372 -14.34842 -13.95768 -13.86584 -13.65477 -13.48482 -12.98644 -12.85646 -12.64699 -12.44900 -12.26110 -11.97588 -11.81844 -11.65906 -11.46630 -10.91165 -10.63646 -10.61632 -10.43449 -9.96490 -8.60276 -8.25551 -6.40232 -0.15365 0.09105 0.63563 0.67868 1.21952 1.41458 1.46210 1.51436 1.55372 2.17282 2.40036 2.45238 3.09658 3.28616 3.77160 3.89080 4.07040 4.14913 4.25661 4.40214 4.55212 4.66816 4.75411 4.82495 5.00896 5.08096 5.29565 5.31615 5.45469 5.55425 5.76206 6.03839 6.04798 6.35551 6.75929 7.07444 7.30969 7.49966 8.86892 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035808 B = 0.003245 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.768140 B = 8625.373372 C = 9090.670885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.233 4.233 3 S 0.109 5.891 4 C 0.342 3.658 5 N -0.795 5.795 6 N -0.563 5.563 7 C 0.163 3.837 8 C 0.019 3.981 9 C -0.010 4.010 10 N -0.276 5.276 11 C 0.124 3.876 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.082 0.918 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.975 3.025 18 H -0.261 1.261 19 H -0.289 1.289 20 H -0.263 1.263 21 N -0.114 5.114 22 N -0.277 5.277 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.430 0.570 27 H 0.420 0.580 28 H 0.220 0.780 29 H 0.106 0.894 30 H 0.129 0.871 31 H -0.010 1.010 32 H -0.001 1.001 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 21.971 -8.881 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.358 4.358 3 S 0.356 5.644 4 C -0.034 4.034 5 N -0.351 5.351 6 N -0.289 5.289 7 C 0.033 3.967 8 C -0.122 4.122 9 C -0.164 4.164 10 N -0.068 5.068 11 C 0.005 3.995 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.100 0.900 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.215 1.215 20 H -0.188 1.188 21 N -0.093 5.093 22 N -0.143 5.143 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.264 0.736 27 H 0.253 0.747 28 H 0.237 0.763 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.009 0.991 32 H 0.018 0.982 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.758 22.212 -8.163 24.611 hybrid contribution 1.068 -1.715 0.029 2.021 sum 7.826 20.497 -8.134 23.400 Atomic orbital electron populations 1.20128 0.85931 1.02967 1.02944 1.25384 1.01959 0.93579 1.14879 1.84477 0.96284 1.07659 1.75978 1.24240 0.92508 0.89841 0.96780 1.41516 1.00116 1.11824 1.81608 1.66110 1.15721 1.18514 1.28597 1.16618 0.86685 0.89695 1.03722 1.19683 0.93038 0.92936 1.06520 1.24074 0.99657 0.86204 1.06450 1.47831 1.10573 1.11169 1.37234 1.22585 1.05229 0.71518 1.00125 1.19153 0.96048 0.94388 0.91903 1.21429 1.48292 0.91279 0.97251 0.89992 1.26058 0.94374 1.04755 0.94616 1.70133 1.48324 1.35595 1.03255 0.85354 0.79480 0.77726 0.77606 1.18507 1.21478 1.18805 1.78250 1.10717 1.04266 1.16095 1.75195 1.17510 1.02863 1.18745 0.90872 0.89584 0.91623 0.73576 0.74656 0.76318 0.87553 0.85280 0.99139 0.98228 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 9.62 71.24 0.69 -0.81 16 2 C -0.23 -6.24 6.59 24.78 0.16 -6.08 16 3 S 0.11 2.01 23.43 -56.49 -1.32 0.68 16 4 C 0.34 6.93 8.85 179.31 1.59 8.52 16 5 N -0.80 -8.58 9.08 -56.51 -0.51 -9.09 16 6 N -0.56 -15.78 10.55 -187.02 -1.97 -17.75 16 7 C 0.16 5.12 6.62 40.86 0.27 5.39 16 8 C 0.02 0.69 6.69 41.06 0.27 0.96 16 9 C -0.01 -0.35 11.50 83.73 0.96 0.62 16 10 N -0.28 -10.86 3.44 -346.77 -1.19 -12.05 16 11 C 0.12 4.75 6.39 86.38 0.55 5.30 16 12 C 0.02 1.19 5.10 29.85 0.15 1.34 16 13 C -0.54 -29.05 9.11 25.60 0.23 -28.81 16 14 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 15 C 0.00 0.03 5.46 84.66 0.46 0.50 16 16 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 17 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 21 N -0.11 -5.07 12.88 37.02 0.48 -4.59 16 22 N -0.28 -11.42 10.63 -49.31 -0.52 -11.94 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.07 1.90 6.73 -2.39 -0.02 1.89 16 26 H 0.43 1.78 8.95 -92.71 -0.83 0.95 16 27 H 0.42 3.78 8.95 -92.70 -0.83 2.95 16 28 H 0.22 5.82 8.06 -2.91 -0.02 5.80 16 29 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.13 4.05 8.07 -2.39 -0.02 4.03 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.00 -0.04 8.11 -2.39 -0.02 -0.06 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -73.65 307.56 2.12 -71.53 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -0.49 Total: 8.26 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 5.34 Total: -13.08 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -3.44 Total: -111.97 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.32 Total: 0.68 kcal Total: -73.65 2.12 -71.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887384117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.802 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds