Wall clock time and date at job start Fri Apr 10 2020 14:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.49601 * 2 1 4 4 O 1.42896 * 109.47512 * 60.06370 * 3 2 1 5 5 C 1.53195 * 109.49582 * 120.06368 * 2 1 3 6 6 N 1.46927 * 108.77542 * 65.31536 * 5 2 1 7 7 S 1.65600 * 120.63069 * 233.58223 * 6 5 2 8 8 O 1.42103 * 106.39991 * 336.46429 * 7 6 5 9 9 O 1.42095 * 106.40377 * 203.54214 * 7 6 5 10 10 C 1.76199 * 107.21522 * 90.00034 * 7 6 5 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99836 * 179.72073 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27759 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28262 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.46925 * 118.73952 * 53.86034 * 6 5 2 19 19 C 1.53621 * 108.54255 * 306.09560 * 18 6 5 20 20 C 1.53035 * 109.49552 * 239.89877 * 2 1 3 21 21 H 1.09000 * 109.45960 * 181.39127 * 20 2 1 22 22 O 1.42900 * 109.46143 * 61.42401 * 20 2 1 23 23 H 1.08999 * 109.47041 * 299.93390 * 1 2 3 24 24 H 1.08999 * 109.47000 * 59.94025 * 1 2 3 25 25 H 1.08999 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46773 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47191 * 300.05945 * 3 2 1 28 28 H 0.96691 * 114.00095 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.58354 * 305.52855 * 5 2 1 30 30 H 1.08996 * 109.70118 * 185.17402 * 5 2 1 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.58577 * 65.92685 * 18 6 5 33 33 H 1.08998 * 109.58834 * 186.34796 * 18 6 5 34 34 H 1.09001 * 109.63159 * 294.85953 * 19 18 6 35 35 H 1.09002 * 109.45846 * 174.74088 * 19 18 6 36 36 H 0.96702 * 114.00475 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 8 1.5659 2.1157 1.1675 5 6 2.0413 -0.7234 1.2498 6 7 1.6515 -2.1378 1.1703 7 16 0.8200 -2.8549 2.4099 8 8 1.1030 -2.0937 3.5760 9 8 1.0755 -4.2492 2.3109 10 6 -0.8972 -2.6390 2.0795 11 1 -1.2144 -2.1137 1.1908 12 6 -1.8363 -3.1462 2.9525 13 7 -3.1181 -2.9899 2.7032 14 14 -1.2878 -4.0553 4.4895 15 1 -1.1336 -3.0898 5.6071 16 1 -2.3060 -5.0737 4.8520 17 1 0.0121 -4.7252 4.2310 18 6 2.0189 -2.9056 -0.0274 19 6 1.5031 -2.1562 -1.2653 20 6 2.0408 -0.7235 -1.2481 21 1 3.1305 -0.7448 -1.2350 22 8 1.5922 -0.0328 -2.4158 23 1 -0.3633 0.5128 0.8906 24 1 -0.3633 0.5148 -0.8894 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1307 1.4417 -0.0005 27 1 1.6767 1.9566 -0.8895 28 1 1.8514 3.0372 1.2334 29 1 1.6007 -0.2724 2.1390 30 1 3.1273 -0.6460 1.3008 31 1 -3.7786 -3.3464 3.3175 32 1 3.1032 -3.0024 -0.0810 33 1 1.5635 -3.8948 0.0188 34 1 0.4133 -2.1359 -1.2534 35 1 1.8476 -2.6634 -2.1665 36 1 1.8797 -0.4363 -3.2463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:03 Heat of formation + Delta-G solvation = -177.635271 kcal Electronic energy + Delta-G solvation = -22039.272529 eV Core-core repulsion = 18650.417627 eV Total energy + Delta-G solvation = -3388.854901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65542 -36.47817 -35.70664 -35.66488 -34.40582 -33.01022 -32.42988 -30.64639 -26.82622 -26.15401 -25.70235 -23.76817 -21.85407 -18.93838 -18.22782 -17.62350 -17.28534 -17.11178 -16.66566 -15.39784 -15.23926 -14.65632 -14.34592 -14.07994 -13.99217 -13.57306 -13.36757 -13.04091 -12.83781 -12.65057 -12.15271 -11.88308 -11.75771 -11.36796 -11.22825 -10.98288 -10.88641 -10.83032 -10.58856 -10.44247 -10.24878 -10.08558 -9.83398 -9.73065 -9.65439 -9.16315 -9.04191 -8.25066 -6.74918 -5.27672 2.03175 3.09635 3.20890 3.29658 3.98962 4.11497 4.22445 4.35747 4.63669 4.86301 5.04556 5.10395 5.23189 5.39371 5.42350 5.45955 5.59025 5.66190 5.74170 5.83366 5.95707 6.03954 6.10199 6.19754 6.30579 6.42013 6.52718 6.56230 6.74260 7.00788 7.37045 7.54115 7.66479 7.79880 8.31345 8.76815 10.37007 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023698 B = 0.007482 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.262930 B = 3741.510351 C = 3924.409385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C 0.092 3.908 4 O -0.565 6.565 5 C 0.142 3.858 6 N -1.001 6.001 7 S 2.673 3.327 8 O -1.007 7.007 9 O -1.008 7.008 10 C -1.013 5.013 11 H 0.128 0.872 12 C 0.155 3.845 13 N -0.823 5.823 14 Si 0.798 3.202 15 H -0.247 1.247 16 H -0.256 1.256 17 H -0.221 1.221 18 C 0.128 3.872 19 C -0.169 4.169 20 C 0.121 3.879 21 H 0.053 0.947 22 O -0.564 6.564 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.374 0.626 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.279 0.721 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 6.073 -9.176 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C 0.013 3.987 4 O -0.369 6.369 5 C 0.015 3.985 6 N -0.836 5.836 7 S 2.776 3.224 8 O -0.997 6.997 9 O -0.999 6.999 10 C -1.148 5.148 11 H 0.145 0.855 12 C -0.065 4.065 13 N -0.452 5.452 14 Si 0.618 3.382 15 H -0.171 1.171 16 H -0.180 1.180 17 H -0.143 1.143 18 C 0.002 3.998 19 C -0.208 4.208 20 C 0.062 3.938 21 H 0.071 0.929 22 O -0.369 6.369 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.140 5.398 -7.836 13.906 hybrid contribution -0.003 0.008 -0.353 0.353 sum 10.137 5.406 -8.189 14.108 Atomic orbital electron populations 1.21888 0.92148 1.03525 1.02040 1.20930 0.98756 0.93039 0.93818 1.22090 0.96310 0.92524 0.87728 1.86571 1.77529 1.28542 1.44285 1.21278 0.98913 0.80111 0.98150 1.57756 1.73174 1.18621 1.34086 1.01516 0.76624 0.72578 0.71684 1.93404 1.87038 1.72255 1.47051 1.93448 1.87567 1.32699 1.86156 1.30604 1.13451 1.50380 1.20335 0.85463 1.24408 0.94368 0.91379 0.96298 1.69991 1.00588 1.38664 1.35938 0.87921 0.83218 0.82174 0.84842 1.17067 1.17982 1.14317 1.21285 0.99517 0.95346 0.83659 1.22776 1.03788 0.95693 0.98554 1.21667 0.96323 0.90892 0.84931 0.92923 1.86528 1.79118 1.55533 1.15760 0.91546 0.92821 0.90824 0.94285 0.92729 0.78000 0.87617 0.92413 0.91013 0.92129 0.88607 0.89444 0.91025 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.70 37.16 0.29 -2.25 16 2 C -0.06 -0.99 0.43 -154.39 -0.07 -1.06 16 3 C 0.09 1.21 5.76 37.16 0.21 1.42 16 4 O -0.56 -7.81 12.43 -35.23 -0.44 -8.25 16 5 C 0.14 2.52 4.83 -3.71 -0.02 2.50 16 6 N -1.00 -19.79 2.72 -113.27 -0.31 -20.10 16 7 S 2.67 67.91 4.19 -107.50 -0.45 67.46 16 8 O -1.01 -27.51 15.56 -57.17 -0.89 -28.40 16 9 O -1.01 -27.07 14.72 -57.17 -0.84 -27.91 16 10 C -1.01 -28.25 10.24 30.60 0.31 -27.93 16 11 H 0.13 3.55 5.91 -52.49 -0.31 3.24 16 12 C 0.15 4.47 5.47 -17.82 -0.10 4.38 16 13 N -0.82 -23.86 13.96 55.43 0.77 -23.09 16 14 Si 0.80 20.86 26.54 -169.99 -4.51 16.34 16 15 H -0.25 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.22 -5.88 5.60 56.52 0.32 -5.56 16 18 C 0.13 2.06 6.41 -3.49 -0.02 2.04 16 19 C -0.17 -2.30 5.37 -26.39 -0.14 -2.44 16 20 C 0.12 1.56 2.56 -26.69 -0.07 1.49 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 O -0.56 -6.62 11.99 -35.23 -0.42 -7.04 16 23 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 24 H 0.05 0.92 7.73 -51.93 -0.40 0.51 16 25 H 0.07 1.47 3.76 -51.93 -0.20 1.28 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 28 H 0.37 3.20 9.12 45.56 0.42 3.62 16 29 H 0.11 2.13 6.85 -51.93 -0.36 1.78 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.64 7.12 -51.93 -0.37 1.27 16 34 H 0.09 1.38 6.33 -51.93 -0.33 1.05 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.37 2.71 9.08 45.56 0.41 3.12 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -34.63 290.95 -5.57 -40.19 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.26 Total: 8.26 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 0.40 Total: -21.85 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.47 Total: -43.19 kcal Atomic # 8 Polarization: -69.01 SS G_CDS: -2.59 Total: -71.60 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.51 Total: 16.34 kcal Atomic # 16 Polarization: 67.91 SS G_CDS: -0.45 Total: 67.46 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.63 -5.57 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.441 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds