Wall clock time and date at job start Fri Apr 10 2020 14:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.49601 * 2 1 4 4 O 1.42896 * 109.47512 * 60.06370 * 3 2 1 5 5 C 1.53195 * 109.49582 * 120.06368 * 2 1 3 6 6 N 1.46927 * 108.77542 * 65.31536 * 5 2 1 7 7 S 1.65600 * 120.63069 * 233.58223 * 6 5 2 8 8 O 1.42103 * 106.39991 * 336.46429 * 7 6 5 9 9 O 1.42095 * 106.40377 * 203.54214 * 7 6 5 10 10 C 1.76199 * 107.21522 * 90.00034 * 7 6 5 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99836 * 179.72073 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27759 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28262 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.46925 * 118.73952 * 53.86034 * 6 5 2 19 19 C 1.53621 * 108.54255 * 306.09560 * 18 6 5 20 20 C 1.53035 * 109.49552 * 239.89877 * 2 1 3 21 21 H 1.09000 * 109.45960 * 181.39127 * 20 2 1 22 22 O 1.42900 * 109.46143 * 61.42401 * 20 2 1 23 23 H 1.08999 * 109.47041 * 299.93390 * 1 2 3 24 24 H 1.08999 * 109.47000 * 59.94025 * 1 2 3 25 25 H 1.08999 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46773 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47191 * 300.05945 * 3 2 1 28 28 H 0.96691 * 114.00095 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.58354 * 305.52855 * 5 2 1 30 30 H 1.08996 * 109.70118 * 185.17402 * 5 2 1 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.58577 * 65.92685 * 18 6 5 33 33 H 1.08998 * 109.58834 * 186.34796 * 18 6 5 34 34 H 1.09001 * 109.63159 * 294.85953 * 19 18 6 35 35 H 1.09002 * 109.45846 * 174.74088 * 19 18 6 36 36 H 0.96702 * 114.00475 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 8 1.5659 2.1157 1.1675 5 6 2.0413 -0.7234 1.2498 6 7 1.6515 -2.1378 1.1703 7 16 0.8200 -2.8549 2.4099 8 8 1.1030 -2.0937 3.5760 9 8 1.0755 -4.2492 2.3109 10 6 -0.8972 -2.6390 2.0795 11 1 -1.2144 -2.1137 1.1908 12 6 -1.8363 -3.1462 2.9525 13 7 -3.1181 -2.9899 2.7032 14 14 -1.2878 -4.0553 4.4895 15 1 -1.1336 -3.0898 5.6071 16 1 -2.3060 -5.0737 4.8520 17 1 0.0121 -4.7252 4.2310 18 6 2.0189 -2.9056 -0.0274 19 6 1.5031 -2.1562 -1.2653 20 6 2.0408 -0.7235 -1.2481 21 1 3.1305 -0.7448 -1.2350 22 8 1.5922 -0.0328 -2.4158 23 1 -0.3633 0.5128 0.8906 24 1 -0.3633 0.5148 -0.8894 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1307 1.4417 -0.0005 27 1 1.6767 1.9566 -0.8895 28 1 1.8514 3.0372 1.2334 29 1 1.6007 -0.2724 2.1390 30 1 3.1273 -0.6460 1.3008 31 1 -3.7786 -3.3464 3.3175 32 1 3.1032 -3.0024 -0.0810 33 1 1.5635 -3.8948 0.0188 34 1 0.4133 -2.1359 -1.2534 35 1 1.8476 -2.6634 -2.1665 36 1 1.8797 -0.4363 -3.2463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:02 Heat of formation + Delta-G solvation = -210.235487 kcal Electronic energy + Delta-G solvation = -22040.686180 eV Core-core repulsion = 18650.417627 eV Total energy + Delta-G solvation = -3390.268553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82122 -37.79241 -37.44046 -36.84269 -36.50084 -35.18058 -33.70461 -31.86912 -28.66691 -27.87296 -26.84867 -25.03263 -23.04782 -20.79045 -19.68321 -19.31725 -18.73325 -18.28464 -18.04401 -17.21512 -16.88361 -16.02475 -15.69635 -15.53916 -15.28079 -15.22415 -14.95588 -14.78313 -14.31955 -13.90032 -13.70449 -13.46915 -13.28746 -13.10499 -12.92001 -12.66197 -12.59512 -12.53151 -12.29654 -12.05160 -11.82548 -11.53763 -11.33811 -11.23852 -11.06773 -10.78238 -10.63746 -9.79142 -8.94486 -7.48239 0.10501 1.01906 1.11602 1.18472 1.87738 2.40853 2.44466 3.25741 3.34317 3.39841 3.70109 3.89728 3.93770 4.06520 4.23189 4.28436 4.36397 4.43626 4.60373 4.67046 4.71258 4.78073 4.86193 4.90891 4.99469 5.04786 5.20301 5.25770 5.36243 5.43165 5.56148 5.87007 6.11913 6.57112 7.02538 7.05614 8.22811 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023698 B = 0.007482 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.262930 B = 3741.510351 C = 3924.409385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.068 4.068 3 C 0.096 3.904 4 O -0.593 6.593 5 C 0.135 3.865 6 N -0.997 5.997 7 S 2.689 3.311 8 O -1.031 7.031 9 O -1.026 7.026 10 C -1.033 5.033 11 H 0.113 0.887 12 C 0.110 3.890 13 N -0.853 5.853 14 Si 0.820 3.180 15 H -0.243 1.243 16 H -0.219 1.219 17 H -0.230 1.230 18 C 0.116 3.884 19 C -0.166 4.166 20 C 0.131 3.869 21 H 0.088 0.912 22 O -0.573 6.573 23 H 0.034 0.966 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.395 0.605 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.289 0.711 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 6.364 -10.626 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.070 4.070 3 C 0.018 3.982 4 O -0.401 6.401 5 C 0.010 3.990 6 N -0.836 5.836 7 S 2.791 3.209 8 O -1.021 7.021 9 O -1.016 7.016 10 C -1.166 5.166 11 H 0.131 0.869 12 C -0.106 4.106 13 N -0.484 5.484 14 Si 0.638 3.362 15 H -0.167 1.167 16 H -0.141 1.141 17 H -0.152 1.152 18 C -0.009 4.009 19 C -0.205 4.205 20 C 0.072 3.928 21 H 0.106 0.894 22 O -0.382 6.382 23 H 0.053 0.947 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.245 0.755 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.538 5.690 -9.302 16.616 hybrid contribution -0.745 -0.002 -0.014 0.745 sum 11.793 5.688 -9.316 16.069 Atomic orbital electron populations 1.21770 0.95104 1.01390 1.00718 1.20977 0.96289 0.95134 0.94557 1.22087 0.97896 0.90636 0.87616 1.86535 1.78253 1.30478 1.44825 1.21469 1.00759 0.78579 0.98166 1.57370 1.72172 1.19839 1.34226 1.00759 0.75593 0.72211 0.72313 1.93363 1.86966 1.72683 1.49111 1.93412 1.87438 1.33878 1.86842 1.31137 1.15923 1.49723 1.19781 0.86899 1.25127 0.94732 0.92216 0.98529 1.70020 1.01315 1.39809 1.37267 0.87570 0.83628 0.82432 0.82610 1.16693 1.14084 1.15210 1.21681 1.01867 0.94422 0.82937 1.22775 1.01933 0.96817 0.98955 1.21508 0.97828 0.89376 0.84123 0.89434 1.86483 1.79544 1.55615 1.16537 0.94665 0.92169 0.93354 0.91196 0.92111 0.75533 0.90926 0.88782 0.90018 0.88127 0.90330 0.92591 0.86822 0.75420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 7.70 71.98 0.55 -4.39 16 2 C -0.07 -1.98 0.43 -52.10 -0.02 -2.00 16 3 C 0.10 2.25 5.76 71.98 0.41 2.66 16 4 O -0.59 -15.67 12.43 -148.98 -1.85 -17.52 16 5 C 0.14 4.62 4.83 86.36 0.42 5.04 16 6 N -1.00 -38.64 2.72 -512.29 -1.39 -40.04 16 7 S 2.69 138.49 4.19 -56.49 -0.24 138.26 16 8 O -1.03 -57.20 15.56 -128.00 -1.99 -59.19 16 9 O -1.03 -55.33 14.72 -128.00 -1.88 -57.22 16 10 C -1.03 -59.74 10.24 67.74 0.69 -59.05 16 11 H 0.11 6.67 5.91 -2.91 -0.02 6.65 16 12 C 0.11 6.53 5.47 84.66 0.46 6.99 16 13 N -0.85 -50.76 13.96 21.45 0.30 -50.46 16 14 Si 0.82 42.44 26.54 68.60 1.82 44.26 16 15 H -0.24 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.22 -9.94 7.11 99.48 0.71 -9.24 16 17 H -0.23 -12.17 5.60 99.48 0.56 -11.61 16 18 C 0.12 3.46 6.41 86.51 0.55 4.01 16 19 C -0.17 -4.04 5.37 30.82 0.17 -3.87 16 20 C 0.13 2.85 2.56 30.62 0.08 2.93 16 21 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 22 O -0.57 -11.16 11.99 -148.98 -1.79 -12.94 16 23 H 0.03 1.47 7.69 -2.39 -0.02 1.45 16 24 H 0.06 2.08 7.73 -2.39 -0.02 2.06 16 25 H 0.05 2.02 3.76 -2.39 -0.01 2.01 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.36 7.66 -2.39 -0.02 1.34 16 28 H 0.40 6.10 9.12 -74.06 -0.68 5.42 16 29 H 0.07 2.97 6.85 -2.39 -0.02 2.95 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.29 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.62 7.12 -2.39 -0.02 2.60 16 34 H 0.06 1.73 6.33 -2.39 -0.02 1.72 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.40 3.86 9.08 -74.06 -0.67 3.18 16 Total: -1.00 -77.61 290.95 -4.08 -81.69 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.37 Total: 20.84 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 3.32 Total: -47.68 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -1.09 Total: -90.49 kcal Atomic # 8 Polarization: -139.37 SS G_CDS: -7.51 Total: -146.88 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.82 Total: 44.26 kcal Atomic # 16 Polarization: 138.49 SS G_CDS: -0.24 Total: 138.26 kcal Total: -77.61 -4.08 -81.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.543 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds