Wall clock time and date at job start Fri Apr 10 2020 14:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.49792 * 2 1 4 4 O 1.42898 * 109.47319 * 300.07058 * 3 2 1 5 5 C 1.53195 * 109.51879 * 239.92192 * 2 1 3 6 6 N 1.46921 * 108.77696 * 294.66399 * 5 2 1 7 7 S 1.65609 * 120.63170 * 126.41386 * 6 5 2 8 8 O 1.42099 * 106.39850 * 23.51909 * 7 6 5 9 9 O 1.42101 * 106.40125 * 156.44057 * 7 6 5 10 10 C 1.76196 * 107.21787 * 269.98220 * 7 6 5 11 11 H 1.08003 * 119.99976 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00026 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99735 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00114 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47276 * 359.97438 * 14 12 10 16 16 H 1.48509 * 109.47082 * 119.99709 * 14 12 10 17 17 H 1.48493 * 109.47150 * 239.99536 * 14 12 10 18 18 C 1.46925 * 118.74279 * 306.39598 * 6 5 2 19 19 C 1.53196 * 108.77571 * 53.60578 * 18 6 5 20 20 C 1.53041 * 109.49826 * 120.06921 * 2 1 3 21 21 H 1.09003 * 109.45857 * 178.63690 * 20 2 1 22 22 O 1.42894 * 109.45797 * 298.60937 * 20 2 1 23 23 H 1.08999 * 109.47631 * 59.99578 * 1 2 3 24 24 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46892 * 299.99366 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46832 * 60.06942 * 3 2 1 28 28 H 0.96701 * 113.99881 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.58971 * 54.45422 * 5 2 1 30 30 H 1.09003 * 109.58391 * 174.88191 * 5 2 1 31 31 H 0.97006 * 120.00151 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.58500 * 293.82317 * 18 6 5 33 33 H 1.09002 * 109.59210 * 173.39703 * 18 6 5 34 34 H 1.09000 * 109.49868 * 185.41809 * 19 18 6 35 35 H 1.08996 * 109.52585 * 65.33571 * 19 18 6 36 36 H 0.96701 * 114.00282 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 8 1.5633 2.1166 -1.1659 5 6 2.0418 -0.7237 -1.2495 6 7 1.6527 -2.1382 -1.1695 7 16 0.8217 -2.8561 -2.4090 8 8 1.1042 -2.0949 -3.5753 9 8 1.0783 -4.2502 -2.3097 10 6 -0.8957 -2.6415 -2.0788 11 1 -1.2132 -2.1163 -1.1900 12 6 -1.8343 -3.1450 -2.9543 13 7 -1.4476 -3.7850 -4.0362 14 14 -3.6550 -2.9181 -2.6038 15 1 -3.8249 -2.1700 -1.3323 16 1 -4.2818 -2.1567 -3.7142 17 1 -4.3058 -4.2476 -2.4860 18 6 2.0152 -2.9038 0.0310 19 6 1.5036 -2.1558 1.2661 20 6 2.0408 -0.7228 1.2485 21 1 3.1306 -0.7437 1.2357 22 8 1.5915 -0.0319 2.4158 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.1307 1.4417 -0.0005 27 1 1.6785 1.9558 0.8906 28 1 1.8493 3.0380 -1.2321 29 1 1.6013 -0.2732 -2.1389 30 1 3.1280 -0.6457 -1.2976 31 1 -2.1079 -4.1389 -4.6524 32 1 3.0993 -3.0036 0.0872 33 1 1.5571 -3.8919 -0.0136 34 1 1.8487 -2.6626 2.1673 35 1 0.4139 -2.1359 1.2546 36 1 1.8790 -0.4349 3.2465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:04 Heat of formation + Delta-G solvation = -226.952917 kcal Electronic energy + Delta-G solvation = -21998.299997 eV Core-core repulsion = 18607.306522 eV Total energy + Delta-G solvation = -3390.993475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80548 -37.57685 -37.36679 -36.80584 -36.14617 -35.18526 -33.66119 -31.83074 -28.50918 -27.72636 -26.82397 -24.97047 -22.98478 -20.80710 -19.64745 -19.21142 -18.39947 -18.27665 -17.97484 -17.05156 -16.75915 -16.07897 -15.79556 -15.48259 -15.24576 -15.16932 -14.81839 -14.25890 -14.03682 -13.81898 -13.67091 -13.11402 -13.05182 -13.02465 -12.90083 -12.56121 -12.48887 -12.38318 -12.31225 -12.08877 -12.01293 -11.48216 -11.27290 -11.22064 -10.90777 -10.77977 -10.61971 -9.77265 -8.73856 -7.45545 0.30521 1.29987 1.31253 1.48670 2.19105 2.57870 2.80074 3.27361 3.37874 3.71040 3.80661 3.95778 3.97562 4.13358 4.28734 4.35163 4.43331 4.49019 4.61690 4.69979 4.72905 4.81261 4.87722 4.93134 5.00248 5.04783 5.22108 5.26228 5.32558 5.42888 5.58159 5.96238 5.99615 6.80338 7.02391 7.05419 8.21590 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.007640 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.475416 B = 3664.203808 C = 3886.069740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C 0.096 3.904 4 O -0.592 6.592 5 C 0.137 3.863 6 N -1.007 6.007 7 S 2.715 3.285 8 O -1.044 7.044 9 O -1.040 7.040 10 C -1.032 5.032 11 H 0.121 0.879 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.985 3.015 15 H -0.249 1.249 16 H -0.261 1.261 17 H -0.257 1.257 18 C 0.116 3.884 19 C -0.163 4.163 20 C 0.131 3.869 21 H 0.081 0.919 22 O -0.571 6.571 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.395 0.605 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.298 0.702 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 8.987 14.727 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 C 0.018 3.982 4 O -0.400 6.400 5 C 0.012 3.988 6 N -0.845 5.845 7 S 2.817 3.183 8 O -1.034 7.034 9 O -1.031 7.031 10 C -1.165 5.165 11 H 0.139 0.861 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.803 3.197 15 H -0.172 1.172 16 H -0.185 1.185 17 H -0.181 1.181 18 C -0.009 4.009 19 C -0.202 4.202 20 C 0.072 3.928 21 H 0.099 0.901 22 O -0.379 6.379 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.244 0.756 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.568 8.239 13.265 16.940 hybrid contribution -0.904 0.136 0.307 0.965 sum 5.664 8.375 13.572 16.924 Atomic orbital electron populations 1.21802 0.94683 1.01634 1.01106 1.20959 0.96821 0.94888 0.94230 1.22084 0.97688 0.90759 0.87707 1.86538 1.77982 1.30461 1.45046 1.21375 1.00184 0.79062 0.98179 1.57708 1.72977 1.19620 1.34192 1.00085 0.75644 0.71320 0.71214 1.93292 1.87433 1.73088 1.49581 1.93288 1.87813 1.35136 1.86832 1.31042 1.16998 1.49668 1.18819 0.86125 1.25962 1.07393 0.89030 0.91681 1.70003 1.39617 1.31634 1.11602 0.85183 0.74783 0.79647 0.80089 1.17151 1.18530 1.18134 1.21503 1.01419 0.94512 0.83440 1.22684 1.02258 0.96620 0.98617 1.21471 0.97597 0.89495 0.84229 0.90078 1.86471 1.79410 1.55614 1.16455 0.94251 0.92987 0.91674 0.91731 0.91814 0.75568 0.91269 0.89909 0.89231 0.89196 0.90725 0.86939 0.91904 0.75427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 7.70 71.98 0.55 -4.15 16 2 C -0.07 -1.96 0.43 -52.10 -0.02 -1.98 16 3 C 0.10 2.25 5.76 71.98 0.41 2.67 16 4 O -0.59 -15.64 12.43 -148.98 -1.85 -17.49 16 5 C 0.14 4.94 4.83 86.36 0.42 5.36 16 6 N -1.01 -41.27 2.73 -513.06 -1.40 -42.67 16 7 S 2.71 151.49 4.97 -56.49 -0.28 151.21 16 8 O -1.04 -65.19 16.73 -128.00 -2.14 -67.33 16 9 O -1.04 -63.28 16.73 -128.00 -2.14 -65.42 16 10 C -1.03 -58.34 9.70 67.73 0.66 -57.68 16 11 H 0.12 6.25 5.67 -2.91 -0.02 6.23 16 12 C 0.07 4.10 5.46 84.65 0.46 4.57 16 13 N -0.90 -55.02 13.19 21.45 0.28 -54.73 16 14 Si 0.98 42.83 29.54 68.60 2.03 44.86 16 15 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 C 0.12 3.70 6.38 86.36 0.55 4.25 16 19 C -0.16 -3.95 5.36 30.67 0.16 -3.79 16 20 C 0.13 2.88 2.56 30.62 0.08 2.96 16 21 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 22 O -0.57 -10.64 11.98 -148.98 -1.78 -12.42 16 23 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 24 H 0.05 1.99 3.77 -2.38 -0.01 1.98 16 25 H 0.06 2.04 7.72 -2.38 -0.02 2.02 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.39 7.65 -2.39 -0.02 1.37 16 28 H 0.39 6.10 9.12 -74.06 -0.68 5.43 16 29 H 0.07 2.99 6.85 -2.39 -0.02 2.97 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.30 16.37 8.31 -92.70 -0.77 15.60 16 32 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.07 2.67 7.13 -2.39 -0.02 2.65 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.83 6.34 -2.39 -0.02 1.81 16 36 H 0.40 3.59 9.08 -74.06 -0.67 2.92 16 Total: -1.00 -83.29 297.84 -4.24 -87.53 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.22 Total: 24.26 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.28 Total: -47.79 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -1.12 Total: -97.40 kcal Atomic # 8 Polarization: -154.74 SS G_CDS: -7.92 Total: -162.66 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 151.49 SS G_CDS: -0.28 Total: 151.21 kcal Total: -83.29 -4.24 -87.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.425 kcal (2) G-P(sol) polarization free energy of solvation -83.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds