Wall clock time and date at job start Fri Apr 10 2020 13:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39928 * 126.57452 * 2 1 4 4 C 1.37745 * 106.84951 * 180.24438 * 3 2 1 5 5 C 1.47058 * 125.79261 * 179.75556 * 4 3 2 6 6 O 1.21691 * 119.99809 * 354.26669 * 5 4 3 7 7 N 1.34768 * 120.00142 * 174.26095 * 5 4 3 8 8 C 1.36569 * 120.00378 * 185.12406 * 7 5 4 9 9 H 1.08001 * 120.00438 * 225.18241 * 8 7 5 10 10 C 1.39243 * 119.99878 * 45.18420 * 8 7 5 11 11 N 1.31252 * 119.99752 * 6.52251 * 10 8 7 12 12 Si 1.86796 * 120.00066 * 186.52115 * 10 8 7 13 13 H 1.48508 * 109.46929 * 90.00381 * 12 10 8 14 14 H 1.48502 * 109.47101 * 209.99743 * 12 10 8 15 15 H 1.48498 * 109.47467 * 330.00235 * 12 10 8 16 16 C 1.46502 * 120.00005 * 5.13127 * 7 5 4 17 17 C 1.53001 * 117.50054 * 182.40573 * 16 7 5 18 18 C 1.52996 * 117.50504 * 113.78042 * 16 7 5 19 19 O 1.34552 * 108.41327 * 359.78558 * 4 3 2 20 20 C 1.34623 * 109.47314 * 359.97438 * 19 4 3 21 21 C 1.47003 * 125.79313 * 179.97438 * 20 19 4 22 22 O 1.21558 * 119.99431 * 179.75078 * 21 20 19 23 23 O 1.34839 * 120.00151 * 0.03454 * 21 20 19 24 24 H 1.08999 * 109.46752 * 270.13015 * 1 2 3 25 25 H 1.09000 * 109.46858 * 30.12670 * 1 2 3 26 26 H 1.08994 * 109.47106 * 150.12298 * 1 2 3 27 27 H 1.07993 * 126.57773 * 0.06436 * 3 2 1 28 28 H 0.96997 * 119.99416 * 185.00315 * 11 10 8 29 29 H 1.09008 * 115.54796 * 328.10343 * 16 7 5 30 30 H 1.08999 * 117.50054 * 359.97438 * 17 16 7 31 31 H 1.08995 * 117.49957 * 145.01809 * 17 16 7 32 32 H 1.09000 * 117.50385 * 214.97926 * 18 16 7 33 33 H 1.09001 * 117.49524 * 359.97438 * 18 16 7 34 34 H 0.96697 * 117.00423 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1237 0.0000 4 6 3.6375 0.6588 -0.0056 5 6 4.8496 1.4914 -0.0127 6 8 4.7570 2.7001 -0.1194 7 7 6.0631 0.9159 0.0989 8 6 7.1814 1.6936 0.1977 9 1 8.0571 1.4572 -0.3885 10 6 7.1924 2.7915 1.0541 11 7 6.1788 3.0052 1.8601 12 14 8.6498 3.9599 1.0561 13 1 8.4153 5.0454 0.0702 14 1 8.8112 4.5476 2.4103 15 1 9.8815 3.2157 0.6894 16 6 6.1828 -0.5442 0.1142 17 6 7.5812 -1.1365 0.2998 18 6 6.8956 -1.2071 -1.0661 19 8 3.6067 -0.6863 -0.0042 20 6 2.3275 -1.1059 0.0028 21 6 1.8823 -2.5069 0.0059 22 8 0.6949 -2.7672 0.0169 23 8 2.7909 -3.5032 0.0024 24 1 -0.3633 0.0023 1.0277 25 1 -0.3633 0.8889 -0.5158 26 1 -0.3633 -0.8910 -0.5119 27 1 2.0279 2.1573 0.0010 28 1 6.1526 3.8080 2.4039 29 1 5.3455 -1.0798 0.5618 30 1 8.4123 -0.4400 0.4102 31 1 7.6641 -2.0620 0.8696 32 1 6.5276 -2.1790 -1.3950 33 1 7.2752 -0.5569 -1.8543 34 1 2.4503 -4.4081 0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607570298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:55 Heat of formation + Delta-G solvation = -64.179799 kcal Electronic energy + Delta-G solvation = -22098.710134 eV Core-core repulsion = 18579.331080 eV Total energy + Delta-G solvation = -3519.379054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.29031 -39.83645 -38.49468 -36.25046 -36.15984 -33.84532 -33.05943 -31.19962 -30.10040 -27.71475 -25.92456 -23.81783 -22.03915 -21.66354 -21.17063 -20.15559 -19.49863 -18.23961 -17.33509 -16.92250 -16.42522 -16.16416 -15.11632 -14.87918 -14.57900 -14.02434 -13.74742 -13.35709 -13.29735 -13.10650 -12.93013 -12.70612 -12.40441 -12.07601 -11.82132 -11.61860 -11.17291 -11.09972 -10.99693 -10.80815 -10.64540 -10.31442 -10.07049 -9.74587 -9.34499 -8.98009 -8.52492 -8.23346 -7.28522 -6.28056 -4.12280 0.90768 2.31458 2.61438 3.01250 3.21555 3.25995 3.28382 3.43271 4.07244 4.28887 4.56425 4.73943 4.92749 5.07214 5.23045 5.28820 5.59356 5.66091 5.72006 5.77372 5.83254 5.90473 5.97070 6.15618 6.22034 6.23026 6.40916 6.46145 6.66928 6.77916 6.87971 7.13379 7.40679 7.87088 8.03249 8.77254 8.88248 9.33062 9.97479 10.74923 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.005941 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.574315 B = 4711.549735 C = 5654.356297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.068 4.068 3 C -0.188 4.188 4 C 0.043 3.957 5 C 0.535 3.465 6 O -0.501 6.501 7 N -0.402 5.402 8 C -0.330 4.330 9 H 0.088 0.912 10 C 0.057 3.943 11 N -0.819 5.819 12 Si 0.922 3.078 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.062 3.938 17 C -0.171 4.171 18 C -0.199 4.199 19 O -0.135 6.135 20 C -0.106 4.106 21 C 0.575 3.425 22 O -0.506 6.506 23 O -0.505 6.505 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.164 0.836 28 H 0.271 0.729 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 -9.643 -2.485 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C -0.209 4.209 4 C -0.014 4.014 5 C 0.322 3.678 6 O -0.379 6.379 7 N -0.121 5.121 8 C -0.457 4.457 9 H 0.106 0.894 10 C -0.155 4.155 11 N -0.453 5.453 12 Si 0.748 3.252 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.044 4.044 17 C -0.209 4.209 18 C -0.238 4.238 19 O -0.030 6.030 20 C -0.156 4.156 21 C 0.421 3.579 22 O -0.397 6.397 23 O -0.316 6.316 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.181 0.819 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.167 -8.789 -2.335 10.459 hybrid contribution 0.310 -0.016 0.187 0.363 sum -4.856 -8.806 -2.148 10.283 Atomic orbital electron populations 1.20443 0.88218 1.03475 1.02905 1.20727 0.97109 0.90599 0.98552 1.21882 0.90329 1.00040 1.08659 1.24271 0.98295 0.79035 0.99751 1.16408 0.80472 0.86077 0.84856 1.90713 1.83595 1.11918 1.51635 1.42616 1.05428 1.02050 1.61971 1.19089 0.92596 1.10525 1.23488 0.89434 1.25459 0.97549 0.99018 0.93445 1.69774 1.29711 1.25195 1.20600 0.86032 0.80988 0.80575 0.77627 1.20100 1.20878 1.19438 1.22138 0.96345 0.84244 1.01635 1.23109 0.97055 1.01885 0.98819 1.23275 1.06017 1.01800 0.92690 1.84415 1.26194 1.22601 1.69821 1.20708 0.83333 0.90968 1.20612 1.18972 0.83084 0.83507 0.72305 1.90907 1.17197 1.83509 1.48059 1.84695 1.41864 1.19310 1.85723 0.90650 0.91037 0.89928 0.81877 0.91865 0.86162 0.87418 0.89469 0.89385 0.89037 0.72828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.81 36.01 0.35 -0.90 16 2 C -0.07 -1.15 6.21 -104.18 -0.65 -1.80 16 3 C -0.19 -3.65 10.60 -39.13 -0.41 -4.06 16 4 C 0.04 0.95 6.88 -36.19 -0.25 0.70 16 5 C 0.53 13.89 6.75 -12.69 -0.09 13.80 16 6 O -0.50 -14.55 14.57 5.20 0.08 -14.48 16 7 N -0.40 -10.09 2.84 -109.09 -0.31 -10.40 16 8 C -0.33 -8.66 7.92 -15.07 -0.12 -8.78 16 9 H 0.09 2.18 7.21 -52.49 -0.38 1.80 16 10 C 0.06 1.53 4.76 -17.43 -0.08 1.45 16 11 N -0.82 -23.38 11.14 55.51 0.62 -22.76 16 12 Si 0.92 20.61 29.56 -169.99 -5.03 15.59 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 C 0.06 1.28 5.50 -67.93 -0.37 0.91 16 17 C -0.17 -3.07 9.80 -26.73 -0.26 -3.33 16 18 C -0.20 -3.49 10.37 -26.73 -0.28 -3.77 16 19 O -0.14 -2.67 7.19 3.89 0.03 -2.64 16 20 C -0.11 -1.86 7.21 -36.23 -0.26 -2.12 16 21 C 0.58 8.66 8.32 34.28 0.29 8.94 16 22 O -0.51 -7.91 15.54 -19.31 -0.30 -8.21 16 23 O -0.50 -6.08 13.44 -42.33 -0.57 -6.65 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.10 6.46 -51.93 -0.34 0.77 16 27 H 0.16 3.00 8.06 -52.49 -0.42 2.58 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.12 2.47 5.35 -51.92 -0.28 2.19 16 30 H 0.11 2.06 6.72 -51.93 -0.35 1.71 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 34 H 0.41 2.58 9.11 45.56 0.42 2.99 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -32.31 301.66 -5.67 -37.98 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.60 Total: 5.98 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.13 Total: 1.04 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.31 Total: -33.16 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.77 Total: -31.97 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.31 -5.67 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607570298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.200 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds