Wall clock time and date at job start Fri Apr 10 2020 13:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39928 * 126.57452 * 2 1 4 4 C 1.37745 * 106.84951 * 180.24438 * 3 2 1 5 5 C 1.47058 * 125.79261 * 179.75556 * 4 3 2 6 6 O 1.21691 * 119.99809 * 354.26669 * 5 4 3 7 7 N 1.34768 * 120.00142 * 174.26095 * 5 4 3 8 8 C 1.36569 * 120.00378 * 185.12406 * 7 5 4 9 9 H 1.08001 * 120.00438 * 225.18241 * 8 7 5 10 10 C 1.39243 * 119.99878 * 45.18420 * 8 7 5 11 11 N 1.31252 * 119.99752 * 6.52251 * 10 8 7 12 12 Si 1.86796 * 120.00066 * 186.52115 * 10 8 7 13 13 H 1.48508 * 109.46929 * 90.00381 * 12 10 8 14 14 H 1.48502 * 109.47101 * 209.99743 * 12 10 8 15 15 H 1.48498 * 109.47467 * 330.00235 * 12 10 8 16 16 C 1.46502 * 120.00005 * 5.13127 * 7 5 4 17 17 C 1.53001 * 117.50054 * 182.40573 * 16 7 5 18 18 C 1.52996 * 117.50504 * 113.78042 * 16 7 5 19 19 O 1.34552 * 108.41327 * 359.78558 * 4 3 2 20 20 C 1.34623 * 109.47314 * 359.97438 * 19 4 3 21 21 C 1.47003 * 125.79313 * 179.97438 * 20 19 4 22 22 O 1.21558 * 119.99431 * 179.75078 * 21 20 19 23 23 O 1.34839 * 120.00151 * 0.03454 * 21 20 19 24 24 H 1.08999 * 109.46752 * 270.13015 * 1 2 3 25 25 H 1.09000 * 109.46858 * 30.12670 * 1 2 3 26 26 H 1.08994 * 109.47106 * 150.12298 * 1 2 3 27 27 H 1.07993 * 126.57773 * 0.06436 * 3 2 1 28 28 H 0.96997 * 119.99416 * 185.00315 * 11 10 8 29 29 H 1.09008 * 115.54796 * 328.10343 * 16 7 5 30 30 H 1.08999 * 117.50054 * 359.97438 * 17 16 7 31 31 H 1.08995 * 117.49957 * 145.01809 * 17 16 7 32 32 H 1.09000 * 117.50385 * 214.97926 * 18 16 7 33 33 H 1.09001 * 117.49524 * 359.97438 * 18 16 7 34 34 H 0.96697 * 117.00423 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1237 0.0000 4 6 3.6375 0.6588 -0.0056 5 6 4.8496 1.4914 -0.0127 6 8 4.7570 2.7001 -0.1194 7 7 6.0631 0.9159 0.0989 8 6 7.1814 1.6936 0.1977 9 1 8.0571 1.4572 -0.3885 10 6 7.1924 2.7915 1.0541 11 7 6.1788 3.0052 1.8601 12 14 8.6498 3.9599 1.0561 13 1 8.4153 5.0454 0.0702 14 1 8.8112 4.5476 2.4103 15 1 9.8815 3.2157 0.6894 16 6 6.1828 -0.5442 0.1142 17 6 7.5812 -1.1365 0.2998 18 6 6.8956 -1.2071 -1.0661 19 8 3.6067 -0.6863 -0.0042 20 6 2.3275 -1.1059 0.0028 21 6 1.8823 -2.5069 0.0059 22 8 0.6949 -2.7672 0.0169 23 8 2.7909 -3.5032 0.0024 24 1 -0.3633 0.0023 1.0277 25 1 -0.3633 0.8889 -0.5158 26 1 -0.3633 -0.8910 -0.5119 27 1 2.0279 2.1573 0.0010 28 1 6.1526 3.8080 2.4039 29 1 5.3455 -1.0798 0.5618 30 1 8.4123 -0.4400 0.4102 31 1 7.6641 -2.0620 0.8696 32 1 6.5276 -2.1790 -1.3950 33 1 7.2752 -0.5569 -1.8543 34 1 2.4503 -4.4081 0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607570298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:55 Heat of formation + Delta-G solvation = -85.839176 kcal Electronic energy + Delta-G solvation = -22099.649355 eV Core-core repulsion = 18579.331080 eV Total energy + Delta-G solvation = -3520.318275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.78205 -41.02316 -40.27542 -37.93721 -37.30301 -35.23256 -34.92660 -33.06234 -31.64663 -28.93418 -27.73123 -25.39621 -23.52223 -23.08048 -22.75780 -21.72287 -21.09901 -19.48737 -18.80959 -18.39941 -18.03108 -17.71493 -16.84409 -16.40093 -16.13583 -15.73731 -15.15925 -14.89014 -14.86493 -14.52748 -14.23978 -14.07176 -13.88945 -13.62082 -13.19560 -13.00187 -12.83039 -12.80470 -12.67536 -12.28446 -12.04776 -11.82723 -11.73964 -11.28294 -10.90458 -10.76110 -10.44274 -9.76432 -9.17381 -8.25495 -6.15834 -0.50979 0.81840 1.25399 1.41525 1.46094 1.53792 1.72279 2.08851 2.29526 2.52132 2.86453 3.03529 3.31717 3.59315 3.66764 4.05043 4.11074 4.23288 4.26283 4.38073 4.42342 4.61979 4.76589 4.84771 4.92373 5.02291 5.04099 5.21583 5.26780 5.37653 5.43617 5.47206 5.68498 6.08168 6.83056 6.87393 6.97431 7.41320 8.06467 8.77500 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.005941 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.574315 B = 4711.549735 C = 5654.356297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.069 4.069 3 C -0.178 4.178 4 C 0.003 3.997 5 C 0.526 3.474 6 O -0.552 6.552 7 N -0.416 5.416 8 C -0.346 4.346 9 H 0.094 0.906 10 C 0.006 3.994 11 N -0.863 5.863 12 Si 0.986 3.014 13 H -0.283 1.283 14 H -0.281 1.281 15 H -0.248 1.248 16 C 0.027 3.973 17 C -0.158 4.158 18 C -0.175 4.175 19 O -0.136 6.136 20 C -0.102 4.102 21 C 0.586 3.414 22 O -0.507 6.507 23 O -0.498 6.498 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.266 0.734 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -12.050 -2.900 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.052 4.052 5 C 0.314 3.686 6 O -0.433 6.433 7 N -0.134 5.134 8 C -0.473 4.473 9 H 0.112 0.888 10 C -0.201 4.201 11 N -0.498 5.498 12 Si 0.809 3.191 13 H -0.210 1.210 14 H -0.206 1.206 15 H -0.172 1.172 16 C -0.077 4.077 17 C -0.196 4.196 18 C -0.213 4.213 19 O -0.032 6.032 20 C -0.153 4.153 21 C 0.431 3.569 22 O -0.398 6.398 23 O -0.312 6.312 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.183 0.817 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -5.554 -11.279 -2.756 12.871 hybrid contribution 0.300 0.502 0.256 0.638 sum -5.254 -10.777 -2.500 12.248 Atomic orbital electron populations 1.20549 0.85308 1.04649 1.04079 1.21092 0.98847 0.89301 0.97820 1.22088 0.89959 1.01031 1.06758 1.23545 0.97585 0.80014 1.04105 1.16877 0.81780 0.86149 0.83786 1.90646 1.84910 1.14023 1.53754 1.42824 1.05022 1.03909 1.61640 1.19384 0.93168 1.11309 1.23466 0.88830 1.26386 0.99976 1.00670 0.93060 1.69908 1.32097 1.25656 1.22135 0.85058 0.78534 0.78202 0.77288 1.20960 1.20607 1.17181 1.22315 0.98198 0.82048 1.05156 1.23190 0.94619 1.02345 0.99404 1.23300 1.03949 1.02325 0.91753 1.84356 1.27413 1.21373 1.70020 1.21421 0.82585 0.92860 1.18442 1.18535 0.83084 0.83072 0.72220 1.90921 1.17387 1.83448 1.48081 1.84632 1.41130 1.20647 1.84817 0.89305 0.89121 0.89496 0.81668 0.92454 0.86015 0.88902 0.86246 0.86162 0.90071 0.69592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.14 9.81 71.24 0.70 -1.45 16 2 C -0.07 -2.22 6.21 -19.58 -0.12 -2.34 16 3 C -0.18 -6.92 10.60 22.56 0.24 -6.68 16 4 C 0.00 0.15 6.88 24.47 0.17 0.31 16 5 C 0.53 28.49 6.75 86.56 0.58 29.07 16 6 O -0.55 -33.85 14.57 -4.32 -0.06 -33.91 16 7 N -0.42 -21.50 2.84 -617.26 -1.75 -23.26 16 8 C -0.35 -18.66 7.92 84.20 0.67 -17.99 16 9 H 0.09 4.75 7.21 -2.91 -0.02 4.73 16 10 C 0.01 0.33 4.76 85.02 0.40 0.74 16 11 N -0.86 -51.52 11.14 21.71 0.24 -51.27 16 12 Si 0.99 43.38 29.56 68.60 2.03 45.40 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 15 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 16 C 0.03 1.11 5.50 44.99 0.25 1.36 16 17 C -0.16 -5.42 9.80 30.59 0.30 -5.12 16 18 C -0.17 -5.81 10.37 30.59 0.32 -5.49 16 19 O -0.14 -5.31 7.19 -7.83 -0.06 -5.36 16 20 C -0.10 -3.41 7.21 24.44 0.18 -3.24 16 21 C 0.59 15.81 8.32 70.12 0.58 16.39 16 22 O -0.51 -14.10 15.54 19.64 0.31 -13.79 16 23 O -0.50 -10.11 13.44 -56.12 -0.75 -10.86 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.09 2.04 6.46 -2.39 -0.02 2.03 16 27 H 0.17 6.23 8.06 -2.91 -0.02 6.21 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.12 4.94 5.35 -2.38 -0.01 4.93 16 30 H 0.09 3.48 6.72 -2.39 -0.02 3.46 16 31 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.44 3.57 9.11 -74.06 -0.67 2.89 16 Total: -1.00 -73.07 301.66 4.70 -68.37 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.49 Total: 19.12 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.26 Total: 5.57 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.51 Total: -74.53 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -0.57 Total: -63.93 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -73.07 4.70 -68.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607570298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.468 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds