Wall clock time and date at job start Fri Apr 10 2020 13:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40049 * 126.52958 * 2 1 4 4 C 1.36635 * 106.91327 * 180.27973 * 3 2 1 5 5 C 1.47146 * 125.81347 * 179.70865 * 4 3 2 6 6 O 1.21536 * 119.99536 * 0.02562 * 5 4 3 7 7 O 1.34815 * 120.00125 * 180.02562 * 5 4 3 8 8 O 1.34569 * 108.37632 * 359.74345 * 4 3 2 9 9 C 1.34528 * 109.36883 * 0.02562 * 8 4 3 10 10 C 1.47328 * 125.80161 * 179.97438 * 9 8 4 11 11 O 1.21609 * 120.00341 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00001 * 0.02562 * 10 9 8 13 13 C 1.47579 * 134.49701 * 180.02562 * 12 10 9 14 14 C 1.53947 * 86.11614 * 155.36008 * 13 12 10 15 15 C 1.50706 * 113.73809 * 137.95390 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.71966 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47405 * 60.00219 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 C 1.47585 * 134.48633 * 0.02562 * 12 10 9 24 24 H 1.08998 * 109.47556 * 270.15685 * 1 2 3 25 25 H 1.09000 * 109.47483 * 30.15540 * 1 2 3 26 26 H 1.09003 * 109.46970 * 150.15456 * 1 2 3 27 27 H 1.08003 * 126.54209 * 0.04226 * 3 2 1 28 28 H 0.96702 * 117.00243 * 180.02562 * 7 5 4 29 29 H 1.08997 * 113.76662 * 41.05329 * 13 12 10 30 30 H 1.09000 * 113.76483 * 269.66159 * 13 12 10 31 31 H 1.08994 * 113.74010 * 269.15100 * 14 13 12 32 32 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 33 33 H 1.09000 * 113.77177 * 90.34376 * 23 12 10 34 34 H 1.08997 * 113.77427 * 318.93669 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3406 1.1254 0.0000 4 6 3.6276 0.6667 -0.0064 5 6 4.8392 1.5016 -0.0148 6 8 4.7423 2.7131 -0.0160 7 8 6.0568 0.9227 -0.0211 8 8 3.5985 -0.6787 -0.0045 9 6 2.3200 -1.0973 0.0025 10 6 1.8728 -2.5011 0.0060 11 8 0.6848 -2.7608 0.0118 12 7 2.7804 -3.4975 0.0028 13 6 2.6986 -4.9710 0.0042 14 6 4.0955 -4.9447 -0.6423 15 6 5.0405 -5.9791 -0.0871 16 1 4.7114 -6.6465 0.6955 17 6 6.3270 -6.0698 -0.5748 18 7 6.7295 -5.2534 -1.5240 19 14 7.4981 -7.3524 0.1128 20 1 6.9338 -8.7078 -0.1095 21 1 8.8103 -7.2433 -0.5739 22 1 7.6816 -7.1253 1.5688 23 6 4.2551 -3.5531 -0.0036 24 1 -0.3634 0.0028 1.0276 25 1 -0.3634 0.8886 -0.5162 26 1 -0.3633 -0.8914 -0.5114 27 1 2.0261 2.1586 0.0006 28 1 6.8232 1.5123 -0.0261 29 1 1.9204 -5.3684 -0.6473 30 1 2.6845 -5.4092 1.0022 31 1 4.0746 -4.9296 -1.7319 32 1 7.6347 -5.3170 -1.8668 33 1 4.6983 -3.5749 0.9920 34 1 4.7197 -2.8186 -0.6614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607601310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:43 Heat of formation + Delta-G solvation = -76.225004 kcal Electronic energy + Delta-G solvation = -21369.342815 eV Core-core repulsion = 17849.441441 eV Total energy + Delta-G solvation = -3519.901373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.89448 -40.11888 -39.34612 -37.23001 -36.37870 -34.21082 -32.73351 -31.13550 -29.42543 -27.55371 -25.82972 -25.21396 -24.51566 -21.47656 -21.29282 -20.14162 -18.86069 -18.15396 -17.51457 -17.07731 -16.81619 -16.54723 -15.62279 -15.44065 -14.73397 -14.46058 -14.09038 -13.75823 -13.41206 -13.31691 -13.06941 -12.76651 -12.55149 -12.24333 -11.97681 -11.82222 -11.66920 -11.33020 -11.18673 -11.00974 -10.86185 -10.46459 -9.95295 -9.88163 -9.39655 -9.14124 -8.85999 -8.63169 -8.01652 -6.21222 -4.27794 0.46766 1.72552 2.18005 2.68223 2.93892 3.23601 3.29323 3.30618 3.34418 3.43329 4.30470 4.56719 4.62006 4.87074 5.08747 5.18506 5.33898 5.51166 5.70081 5.77170 5.97559 5.97779 6.04726 6.12709 6.16240 6.27398 6.31233 6.46018 6.53895 6.71012 6.79888 7.48415 7.61025 7.75377 8.08954 8.17740 8.43265 8.75491 9.39385 10.88318 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.005256 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.530432 B = 5326.464078 C = 6819.075532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.047 4.047 5 C 0.575 3.425 6 O -0.497 6.497 7 O -0.495 6.495 8 O -0.126 6.126 9 C -0.005 4.005 10 C 0.601 3.399 11 O -0.535 6.535 12 N -0.624 5.624 13 C 0.106 3.894 14 C 0.034 3.966 15 C -0.522 4.522 16 H 0.064 0.936 17 C 0.069 3.931 18 N -0.884 5.884 19 Si 0.896 3.104 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.104 3.896 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.169 0.831 28 H 0.420 0.580 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 11.184 2.683 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.134 4.134 4 C -0.099 4.099 5 C 0.419 3.581 6 O -0.387 6.387 7 O -0.306 6.306 8 O -0.021 6.021 9 C -0.060 4.060 10 C 0.389 3.611 11 O -0.416 6.416 12 N -0.356 5.356 13 C -0.015 4.015 14 C 0.015 3.985 15 C -0.560 4.560 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.521 5.521 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.017 4.017 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.187 0.813 28 H 0.279 0.721 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.305 11.088 2.562 12.556 hybrid contribution 1.342 0.069 0.390 1.400 sum -3.962 11.157 2.952 12.203 Atomic orbital electron populations 1.20393 0.87368 1.03801 1.03008 1.20561 0.98193 0.90148 1.03834 1.21801 0.89673 1.00796 1.01147 1.20834 0.93310 0.81323 1.14459 1.18954 0.82065 0.84729 0.72353 1.90970 1.87061 1.13601 1.47077 1.84723 1.16047 1.44877 1.84965 1.84301 1.28293 1.20445 1.69013 1.22738 0.80745 0.95743 1.06797 1.16398 0.85183 0.80973 0.78546 1.90777 1.15239 1.81925 1.53632 1.50539 1.09698 1.07512 1.67858 1.23645 1.00694 0.76137 1.01028 1.20528 0.89224 0.91543 0.97200 1.20893 0.96336 1.17502 1.21281 0.91792 1.25025 0.98299 0.95700 0.94443 1.69939 1.18463 1.36977 1.26673 0.86585 0.79913 0.81876 0.79244 1.20020 1.21204 1.20061 1.23923 0.75495 1.01147 1.01166 0.90809 0.91389 0.89146 0.81314 0.72077 0.91438 0.90142 0.91466 0.92490 0.90242 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.80 36.00 0.35 -0.74 16 2 C -0.12 -1.82 6.18 -104.55 -0.65 -2.47 16 3 C -0.11 -1.51 10.55 -39.48 -0.42 -1.93 16 4 C -0.05 -0.70 7.19 -36.55 -0.26 -0.96 16 5 C 0.58 7.77 8.33 34.35 0.29 8.05 16 6 O -0.50 -7.16 17.65 -19.29 -0.34 -7.50 16 7 O -0.49 -5.80 13.44 -42.23 -0.57 -6.37 16 8 O -0.13 -2.19 9.16 4.15 0.04 -2.15 16 9 C -0.01 -0.09 7.08 -36.49 -0.26 -0.35 16 10 C 0.60 11.79 8.04 -12.56 -0.10 11.69 16 11 O -0.53 -11.03 15.44 5.27 0.08 -10.95 16 12 N -0.62 -12.65 3.61 -179.74 -0.65 -13.30 16 13 C 0.11 2.11 8.39 -2.97 -0.02 2.09 16 14 C 0.03 0.78 3.62 -90.84 -0.33 0.46 16 15 C -0.52 -12.97 8.77 -34.44 -0.30 -13.28 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -23.75 13.27 55.43 0.74 -23.02 16 19 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.10 2.22 7.49 -2.97 -0.02 2.20 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.27 6.43 -51.93 -0.33 0.94 16 27 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 28 H 0.42 2.52 9.11 45.56 0.42 2.94 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 31 H 0.07 1.68 8.13 -51.93 -0.42 1.25 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 34 H 0.07 1.56 7.52 -51.93 -0.39 1.16 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -29.79 310.29 -5.67 -35.46 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.81 Total: 1.98 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.82 Total: 6.43 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.09 Total: -36.32 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.79 Total: -26.97 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.79 -5.67 -35.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607601310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.764 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds