Wall clock time and date at job start Fri Apr 10 2020 13:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40049 * 126.52958 * 2 1 4 4 C 1.36635 * 106.91327 * 180.27973 * 3 2 1 5 5 C 1.47146 * 125.81347 * 179.70865 * 4 3 2 6 6 O 1.21536 * 119.99536 * 0.02562 * 5 4 3 7 7 O 1.34815 * 120.00125 * 180.02562 * 5 4 3 8 8 O 1.34569 * 108.37632 * 359.74345 * 4 3 2 9 9 C 1.34528 * 109.36883 * 0.02562 * 8 4 3 10 10 C 1.47328 * 125.80161 * 179.97438 * 9 8 4 11 11 O 1.21609 * 120.00341 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00001 * 0.02562 * 10 9 8 13 13 C 1.47579 * 134.49701 * 180.02562 * 12 10 9 14 14 C 1.53947 * 86.11614 * 155.36008 * 13 12 10 15 15 C 1.50706 * 113.73809 * 137.95390 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.71966 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47405 * 60.00219 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 C 1.47585 * 134.48633 * 0.02562 * 12 10 9 24 24 H 1.08998 * 109.47556 * 270.15685 * 1 2 3 25 25 H 1.09000 * 109.47483 * 30.15540 * 1 2 3 26 26 H 1.09003 * 109.46970 * 150.15456 * 1 2 3 27 27 H 1.08003 * 126.54209 * 0.04226 * 3 2 1 28 28 H 0.96702 * 117.00243 * 180.02562 * 7 5 4 29 29 H 1.08997 * 113.76662 * 41.05329 * 13 12 10 30 30 H 1.09000 * 113.76483 * 269.66159 * 13 12 10 31 31 H 1.08994 * 113.74010 * 269.15100 * 14 13 12 32 32 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 33 33 H 1.09000 * 113.77177 * 90.34376 * 23 12 10 34 34 H 1.08997 * 113.77427 * 318.93669 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3406 1.1254 0.0000 4 6 3.6276 0.6667 -0.0064 5 6 4.8392 1.5016 -0.0148 6 8 4.7423 2.7131 -0.0160 7 8 6.0568 0.9227 -0.0211 8 8 3.5985 -0.6787 -0.0045 9 6 2.3200 -1.0973 0.0025 10 6 1.8728 -2.5011 0.0060 11 8 0.6848 -2.7608 0.0118 12 7 2.7804 -3.4975 0.0028 13 6 2.6986 -4.9710 0.0042 14 6 4.0955 -4.9447 -0.6423 15 6 5.0405 -5.9791 -0.0871 16 1 4.7114 -6.6465 0.6955 17 6 6.3270 -6.0698 -0.5748 18 7 6.7295 -5.2534 -1.5240 19 14 7.4981 -7.3524 0.1128 20 1 6.9338 -8.7078 -0.1095 21 1 8.8103 -7.2433 -0.5739 22 1 7.6816 -7.1253 1.5688 23 6 4.2551 -3.5531 -0.0036 24 1 -0.3634 0.0028 1.0276 25 1 -0.3634 0.8886 -0.5162 26 1 -0.3633 -0.8914 -0.5114 27 1 2.0261 2.1586 0.0006 28 1 6.8232 1.5123 -0.0261 29 1 1.9204 -5.3684 -0.6473 30 1 2.6845 -5.4092 1.0022 31 1 4.0746 -4.9296 -1.7319 32 1 7.6347 -5.3170 -1.8668 33 1 4.6983 -3.5749 0.9920 34 1 4.7197 -2.8186 -0.6614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607601310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:42 Heat of formation + Delta-G solvation = -95.637864 kcal Electronic energy + Delta-G solvation = -21370.184620 eV Core-core repulsion = 17849.441441 eV Total energy + Delta-G solvation = -3520.743178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.09094 -41.22309 -40.88947 -38.84292 -37.38673 -35.38003 -34.63293 -32.38698 -30.98499 -28.74853 -27.35597 -26.94196 -25.92383 -22.86357 -22.44131 -21.57345 -20.33468 -19.20214 -18.92190 -18.59105 -18.17724 -17.99032 -17.15950 -16.70235 -16.46414 -16.04651 -15.32580 -14.97917 -14.79786 -14.46099 -14.19137 -14.05936 -14.00883 -13.77915 -13.36070 -13.19517 -13.02993 -12.81269 -12.79380 -12.57860 -12.25794 -12.23085 -11.56989 -11.18493 -10.98304 -10.91140 -10.56044 -10.13124 -9.61182 -8.15886 -6.27791 -0.73238 0.55670 1.04994 1.50077 1.50288 1.57902 1.60434 1.69657 1.91117 2.08464 2.46732 3.13969 3.26086 3.48389 3.83368 4.14045 4.17072 4.23676 4.32303 4.40594 4.54564 4.63228 4.76264 4.77897 4.81960 4.90300 4.97418 4.98742 5.20242 5.33407 5.56653 5.58754 5.80803 6.20128 6.57877 6.73890 6.80859 6.87473 7.42526 8.93843 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.005256 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.530432 B = 5326.464078 C = 6819.075532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.105 4.105 3 C -0.101 4.101 4 C -0.055 4.055 5 C 0.583 3.417 6 O -0.505 6.505 7 O -0.500 6.500 8 O -0.148 6.148 9 C -0.047 4.047 10 C 0.602 3.398 11 O -0.549 6.549 12 N -0.631 5.631 13 C 0.115 3.885 14 C 0.023 3.977 15 C -0.531 4.531 16 H 0.070 0.930 17 C 0.021 3.979 18 N -0.919 5.919 19 Si 0.958 3.042 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.268 1.268 23 C 0.121 3.879 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.203 0.797 28 H 0.443 0.557 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.080 0.920 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 12.299 3.569 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.120 4.120 4 C -0.107 4.107 5 C 0.426 3.574 6 O -0.396 6.396 7 O -0.314 6.314 8 O -0.044 6.044 9 C -0.101 4.101 10 C 0.391 3.609 11 O -0.431 6.431 12 N -0.363 5.363 13 C -0.006 4.006 14 C 0.004 3.996 15 C -0.569 4.569 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.557 5.557 19 Si 0.784 3.216 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.193 1.193 23 C -0.001 4.001 24 H 0.105 0.895 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.220 0.780 28 H 0.306 0.694 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.707 12.208 3.457 13.912 hybrid contribution 1.450 -0.180 0.095 1.464 sum -4.257 12.028 3.552 13.244 Atomic orbital electron populations 1.20493 0.85602 1.04441 1.03995 1.20961 0.99313 0.89588 1.00967 1.22165 0.88508 1.01812 0.99539 1.21371 0.94826 0.80663 1.13851 1.18747 0.82247 0.84276 0.72090 1.90969 1.87263 1.13728 1.47650 1.84688 1.16508 1.45839 1.84393 1.84251 1.28400 1.21767 1.69976 1.22442 0.81586 0.95249 1.10775 1.16619 0.84838 0.81763 0.77656 1.90756 1.15558 1.82610 1.54205 1.50455 1.09195 1.07842 1.68803 1.23533 0.99017 0.76495 1.01524 1.20430 0.91129 0.92331 0.95716 1.21235 0.96738 1.17755 1.21142 0.91171 1.25773 0.99920 0.97487 0.94740 1.70060 1.18753 1.38716 1.28128 0.85602 0.77698 0.79604 0.78710 1.19459 1.21407 1.19332 1.23565 0.76349 0.99665 1.00531 0.89504 0.88034 0.91149 0.77988 0.69357 0.90576 0.88816 0.94342 0.92651 0.90232 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 9.80 71.23 0.70 -1.27 16 2 C -0.11 -2.89 6.18 -19.82 -0.12 -3.01 16 3 C -0.10 -2.41 10.55 22.33 0.24 -2.17 16 4 C -0.06 -1.57 7.19 24.24 0.17 -1.40 16 5 C 0.58 14.79 8.33 70.16 0.58 15.38 16 6 O -0.51 -13.45 17.65 19.72 0.35 -13.10 16 7 O -0.50 -11.06 13.44 -55.91 -0.75 -11.81 16 8 O -0.15 -5.13 9.16 -7.09 -0.06 -5.20 16 9 C -0.05 -1.61 7.08 24.27 0.17 -1.44 16 10 C 0.60 23.72 8.04 86.63 0.70 24.42 16 11 O -0.55 -22.61 15.44 -4.06 -0.06 -22.67 16 12 N -0.63 -25.89 3.61 -840.83 -3.03 -28.92 16 13 C 0.12 4.60 8.39 86.48 0.73 5.33 16 14 C 0.02 1.09 3.62 -10.88 -0.04 1.05 16 15 C -0.53 -26.52 8.77 25.60 0.22 -26.29 16 16 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 17 C 0.02 1.09 5.46 84.66 0.46 1.55 16 18 N -0.92 -50.30 13.27 21.45 0.28 -50.01 16 19 Si 0.96 40.42 29.54 68.60 2.03 42.45 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 23 C 0.12 5.28 7.49 86.48 0.65 5.93 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.89 6.43 -2.39 -0.02 1.87 16 27 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.44 4.57 9.11 -74.06 -0.67 3.89 16 29 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 31 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.08 3.43 8.09 -2.39 -0.02 3.41 16 34 H 0.06 2.64 7.52 -2.39 -0.02 2.63 16 Total: -1.00 -63.81 310.29 3.69 -60.13 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.48 Total: 11.07 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 4.46 Total: 18.08 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -2.75 Total: -78.94 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.53 Total: -52.78 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -63.81 3.69 -60.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607601310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.512 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds