Wall clock time and date at job start Fri Apr 10 2020 14:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99805 * 2 1 4 4 H 1.48508 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47191 * 300.00427 * 3 2 1 6 6 H 1.48501 * 109.46943 * 60.00216 * 3 2 1 7 7 C 1.37877 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47480 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47693 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47403 * 179.97438 * 11 10 9 13 13 C 1.46430 * 110.99933 * 170.00194 * 12 11 10 14 14 C 1.53378 * 108.64975 * 287.83135 * 13 12 11 15 15 C 1.53032 * 107.93468 * 291.74432 * 14 13 12 16 16 C 1.50805 * 109.66722 * 47.31463 * 15 14 13 17 17 C 1.38624 * 118.11542 * 164.59518 * 16 15 14 18 18 C 1.38148 * 120.48004 * 179.68333 * 17 16 15 19 19 Cl 1.73599 * 120.06798 * 179.87672 * 18 17 16 20 20 C 1.38412 * 119.85822 * 0.16237 * 18 17 16 21 21 C 1.37812 * 119.93908 * 359.60428 * 20 18 17 22 22 C 1.38366 * 122.01219 * 344.36374 * 16 15 14 23 23 H 0.96991 * 120.00254 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47347 * 60.00004 * 9 7 2 25 25 H 1.08999 * 109.47252 * 300.00632 * 9 7 2 26 26 H 1.09002 * 109.47184 * 60.00046 * 10 9 7 27 27 H 1.08999 * 109.47134 * 300.00386 * 10 9 7 28 28 H 1.09002 * 109.46616 * 59.99884 * 11 10 9 29 29 H 1.08999 * 109.47298 * 300.00472 * 11 10 9 30 30 H 1.09002 * 109.60634 * 168.08026 * 13 12 11 31 31 H 1.09003 * 109.74621 * 47.66490 * 13 12 11 32 32 H 1.09000 * 109.76786 * 172.13546 * 14 13 12 33 33 H 1.08998 * 109.81607 * 51.38361 * 14 13 12 34 34 H 1.09000 * 109.44147 * 287.25710 * 15 14 13 35 35 H 1.08999 * 109.44479 * 167.37630 * 15 14 13 36 36 H 1.08003 * 119.75802 * 359.71445 * 17 16 15 37 37 H 1.07995 * 120.02949 * 179.86175 * 20 18 17 38 38 H 1.07996 * 119.77771 * 180.28468 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4806 -4.9871 0.0001 12 7 2.4352 -6.1036 -0.0005 13 6 1.7531 -7.3773 0.2374 14 6 1.3189 -7.4341 1.7073 15 6 2.5804 -7.5345 2.5678 16 6 3.5883 -6.5094 2.1125 17 6 4.6502 -6.2184 2.9547 18 6 5.6055 -5.2921 2.5836 19 17 6.9292 -4.9335 3.6480 20 6 5.5017 -4.6461 1.3638 21 6 4.4510 -4.9345 0.5200 22 6 3.4811 -5.8673 0.8915 23 1 -0.4850 0.8399 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8536 -5.0451 -0.8897 29 1 0.8541 -5.0446 0.8903 30 1 2.4336 -8.2019 0.0249 31 1 0.8765 -7.4515 -0.4061 32 1 0.6895 -8.3085 1.8723 33 1 0.7679 -6.5296 1.9650 34 1 3.0081 -8.5323 2.4695 35 1 2.3234 -7.3520 3.6112 36 1 4.7316 -6.7200 3.9078 37 1 6.2457 -3.9198 1.0719 38 1 4.3751 -4.4323 -0.4331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102397111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:00 Heat of formation + Delta-G solvation = 10.291249 kcal Electronic energy + Delta-G solvation = -19615.321355 eV Core-core repulsion = 16675.713867 eV Total energy + Delta-G solvation = -2939.607488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73235 -37.37710 -35.94449 -34.95090 -33.18069 -31.14255 -30.22272 -29.65529 -26.90152 -24.66607 -23.11409 -23.03851 -22.01573 -20.40543 -19.07824 -16.71374 -16.45290 -16.17209 -15.73872 -15.06739 -14.71010 -14.31523 -14.18948 -13.82768 -13.44376 -13.24784 -12.92978 -12.72387 -12.30030 -12.18810 -11.80856 -11.66451 -11.46574 -11.15968 -10.99950 -10.90552 -10.81345 -10.60504 -10.49122 -10.34504 -9.74795 -9.37631 -9.11082 -9.00000 -8.59806 -8.34897 -7.66231 -6.00547 -4.02490 1.29070 1.42167 2.25870 3.31284 3.38913 3.43193 3.65461 3.99533 4.46464 4.63961 4.73706 4.85335 4.95064 5.20637 5.24259 5.35732 5.40655 5.49690 5.54244 5.63020 5.72213 5.77303 5.80339 5.83870 6.06995 6.09199 6.21033 6.21925 6.37116 6.44205 6.63919 6.68361 6.79478 7.07636 7.20753 7.53402 7.65307 7.78648 7.98839 8.41829 9.04385 9.61792 11.10982 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.005617 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.333335 B = 4983.297757 C = 6564.507313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.057 3.943 12 N -0.502 5.502 13 C 0.056 3.944 14 C -0.161 4.161 15 C -0.074 4.074 16 C -0.114 4.114 17 C -0.102 4.102 18 C -0.048 4.048 19 Cl -0.084 7.084 20 C -0.105 4.105 21 C -0.091 4.091 22 C 0.125 3.875 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.086 -16.397 4.321 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.157 4.157 11 C -0.067 4.067 12 N -0.217 5.217 13 C -0.072 4.072 14 C -0.200 4.200 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.075 4.075 19 Cl -0.055 7.055 20 C -0.124 4.124 21 C -0.111 4.111 22 C 0.028 3.972 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.192 -16.280 3.908 18.221 hybrid contribution 0.186 1.083 0.893 1.416 sum 7.377 -15.197 4.801 17.562 Atomic orbital electron populations 1.69967 1.06056 1.26470 1.51078 1.25012 0.94826 0.99241 0.95348 0.86567 0.80210 0.83872 0.77574 1.19673 1.21005 1.21036 1.21247 0.93053 0.90913 1.50272 0.92612 1.19063 0.93898 0.91299 0.97137 1.22161 0.99597 0.93004 1.00955 1.22433 0.93398 0.89718 1.01164 1.58892 1.11342 1.03962 1.47547 1.22192 0.98809 0.91199 0.94960 1.22221 0.97540 1.03193 0.97037 1.20473 0.93629 0.97161 0.99844 1.19801 0.97296 1.01488 0.93169 1.20717 0.93515 0.97952 0.99922 1.20705 0.92355 1.01139 0.93280 1.98341 1.47212 1.94326 1.65628 1.20881 0.99036 0.99851 0.92655 1.21350 0.91824 0.97177 1.00764 1.18527 0.93467 0.95934 0.89253 0.93084 0.96526 0.96823 0.92311 0.92270 0.90270 0.93965 0.90445 0.89885 0.90666 0.90824 0.90611 0.90546 0.85576 0.84921 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.42 3.67 -26.73 -0.10 -2.51 16 11 C 0.06 0.95 5.13 -3.83 -0.02 0.93 16 12 N -0.50 -7.39 4.70 -171.27 -0.81 -8.20 16 13 C 0.06 0.65 5.81 -3.88 -0.02 0.63 16 14 C -0.16 -1.73 6.03 -26.52 -0.16 -1.89 16 15 C -0.07 -0.80 5.81 -27.82 -0.16 -0.96 16 16 C -0.11 -1.55 5.74 -104.38 -0.60 -2.15 16 17 C -0.10 -1.34 9.42 -39.47 -0.37 -1.72 16 18 C -0.05 -0.67 6.32 -39.55 -0.25 -0.92 16 19 Cl -0.08 -1.07 28.96 -51.86 -1.50 -2.58 16 20 C -0.10 -1.53 9.82 -39.67 -0.39 -1.92 16 21 C -0.09 -1.41 6.89 -39.23 -0.27 -1.69 16 22 C 0.13 1.89 4.63 -83.82 -0.39 1.51 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 1.22 5.65 -51.93 -0.29 0.93 16 27 H 0.06 1.18 6.69 -51.93 -0.35 0.83 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.72 6.25 -51.93 -0.32 0.39 16 30 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.14 2.25 6.07 -52.49 -0.32 1.93 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -29.92 314.76 -10.50 -40.42 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.37 Total: -1.38 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -3.28 Total: -23.56 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.07 Total: -34.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.92 -10.50 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102397111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.710 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds