Wall clock time and date at job start Fri Apr 10 2020 13:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 180.02562 * 12 11 10 14 14 H 1.09002 * 110.26939 * 34.29993 * 13 12 11 15 15 C 1.54342 * 110.30119 * 156.37362 * 13 12 11 16 16 C 1.54346 * 102.39313 * 92.57459 * 15 13 12 17 17 C 1.51379 * 105.16783 * 26.35075 * 16 15 13 18 18 C 1.38480 * 130.37461 * 162.81341 * 17 16 15 19 19 C 1.38225 * 120.20042 * 179.97438 * 18 17 16 20 20 Cl 1.73600 * 120.04249 * 180.02562 * 19 18 17 21 21 C 1.38368 * 119.90599 * 0.02562 * 19 18 17 22 22 C 1.38078 * 119.92199 * 0.02562 * 21 19 18 23 23 C 1.38317 * 120.30107 * 0.02562 * 22 21 19 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.00899 * 111.00283 * 303.95539 * 12 11 10 32 32 H 1.08996 * 110.82405 * 210.80077 * 15 13 12 33 33 H 1.08998 * 110.82324 * 334.35451 * 15 13 12 34 34 H 1.08997 * 110.30495 * 145.26869 * 16 15 13 35 35 H 1.09000 * 110.30779 * 267.32815 * 16 15 13 36 36 H 1.07997 * 119.90321 * 359.97438 * 18 17 16 37 37 H 1.07999 * 120.03615 * 180.02562 * 21 19 18 38 38 H 1.08002 * 119.88226 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7343 -7.3950 -0.0018 14 1 0.8115 -7.3241 -0.5777 15 6 2.6446 -8.4979 -0.5825 16 6 3.3218 -9.0682 0.6817 17 6 2.3503 -8.7934 1.8097 18 6 2.2712 -9.3414 3.0790 19 6 1.2835 -8.9295 3.9538 20 17 1.1885 -9.6187 5.5443 21 6 0.3706 -7.9671 3.5600 22 6 0.4483 -7.4211 2.2942 23 6 1.4349 -7.8320 1.4162 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.0690 -6.0367 -0.7836 32 1 2.0534 -9.2638 -1.0844 33 1 3.3848 -8.0724 -1.2601 34 1 3.4821 -10.1409 0.5737 35 1 4.2693 -8.5613 0.8647 36 1 2.9834 -10.0928 3.3863 37 1 -0.4017 -7.6434 4.2420 38 1 -0.2643 -6.6696 1.9876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178648744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:38 Heat of formation + Delta-G solvation = -1.976849 kcal Electronic energy + Delta-G solvation = -18639.649578 eV Core-core repulsion = 15699.510106 eV Total energy + Delta-G solvation = -2940.139473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38400 -37.32691 -36.20783 -34.79479 -33.11036 -31.50084 -30.35030 -29.01409 -26.98920 -25.17196 -22.97461 -22.44201 -21.18101 -20.67227 -19.88349 -16.68597 -16.36395 -16.03007 -15.61913 -15.48666 -14.91325 -14.46680 -13.99260 -13.68687 -13.60788 -13.45386 -13.23078 -12.34073 -12.19557 -12.05218 -11.75412 -11.58218 -11.49957 -11.36120 -11.06907 -11.05913 -10.82035 -10.79567 -10.55129 -10.48780 -9.70161 -9.34515 -9.06730 -8.95250 -8.58526 -8.33364 -8.21751 -5.98736 -4.00852 1.06748 1.21011 1.99766 3.34469 3.38603 3.41338 3.49018 4.18847 4.36006 4.44942 4.53961 4.80358 4.85644 4.91910 5.13017 5.20381 5.37026 5.40811 5.47071 5.57632 5.63654 5.74785 5.77230 5.86561 5.89787 5.99330 6.12009 6.18399 6.30614 6.52695 6.69798 6.71156 6.75429 7.13219 7.28322 7.57631 7.68751 7.83817 8.01455 8.44748 9.06046 9.63083 11.12682 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.003287 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.967508 B = 8516.466858 C = 9408.304554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.678 5.678 13 C 0.120 3.880 14 H 0.055 0.945 15 C -0.121 4.121 16 C -0.074 4.074 17 C -0.076 4.076 18 C -0.105 4.105 19 C -0.034 4.034 20 Cl -0.077 7.077 21 C -0.112 4.112 22 C -0.084 4.084 23 C -0.068 4.068 24 H 0.261 0.739 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.342 0.658 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -22.212 3.207 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.311 5.311 13 C 0.010 3.990 14 H 0.073 0.927 15 C -0.159 4.159 16 C -0.111 4.111 17 C -0.077 4.077 18 C -0.123 4.123 19 C -0.060 4.060 20 Cl -0.048 7.048 21 C -0.131 4.131 22 C -0.103 4.103 23 C -0.069 4.069 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.997 -22.136 4.011 22.695 hybrid contribution 0.010 0.978 -0.587 1.141 sum 3.007 -21.157 3.425 21.643 Atomic orbital electron populations 1.69958 1.06056 1.26667 1.50934 1.25027 0.94854 0.99249 0.95360 0.86655 0.79582 0.83122 0.78633 1.20265 1.21305 1.20210 1.21220 0.93021 0.91077 1.50490 0.92736 1.19051 0.93986 0.91351 0.97063 1.21619 0.99198 0.92912 1.00721 1.22209 0.94149 0.90729 0.99886 1.60493 1.20228 1.00340 1.49995 1.20939 0.96305 0.90391 0.91343 0.92726 1.22498 0.98725 0.97618 0.97076 1.20982 0.97674 1.01087 0.91325 1.20526 0.96588 0.96509 0.94036 1.20377 0.98260 1.01269 0.92429 1.20690 0.99147 0.99144 0.87049 1.98358 1.97998 1.84041 1.24435 1.20922 0.99074 0.96392 0.96665 1.20611 0.98302 0.98999 0.92358 1.20582 0.94524 0.95460 0.96337 0.92984 0.96845 0.96620 0.92582 0.93624 0.91515 0.95607 0.83865 0.90469 0.89936 0.90811 0.89480 0.85426 0.84863 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.19 5.41 -26.73 -0.14 -2.34 16 11 C 0.06 0.99 5.52 -3.82 -0.02 0.97 16 12 N -0.68 -9.46 6.34 -106.84 -0.68 -10.14 16 13 C 0.12 1.42 3.19 -67.83 -0.22 1.21 16 14 H 0.05 0.66 7.84 -51.93 -0.41 0.25 16 15 C -0.12 -1.08 6.73 -25.32 -0.17 -1.25 16 16 C -0.07 -0.67 6.77 -26.84 -0.18 -0.85 16 17 C -0.08 -0.87 6.14 -104.12 -0.64 -1.51 16 18 C -0.10 -1.17 9.82 -39.50 -0.39 -1.56 16 19 C -0.03 -0.39 6.32 -39.54 -0.25 -0.64 16 20 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.33 16 21 C -0.11 -1.33 9.83 -39.59 -0.39 -1.72 16 22 C -0.08 -1.07 9.65 -39.61 -0.38 -1.45 16 23 C -0.07 -0.86 5.72 -104.18 -0.60 -1.46 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.17 7.28 -51.93 -0.38 0.79 16 30 H 0.03 0.43 8.07 -51.93 -0.42 0.01 16 31 H 0.34 4.29 8.06 -39.29 -0.32 3.97 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.65 7.56 -51.93 -0.39 0.26 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.13 1.59 7.60 -52.49 -0.40 1.19 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -30.58 329.67 -11.08 -41.66 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.66 Total: -0.75 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -3.93 Total: -23.83 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.06 Total: -36.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.58 -11.08 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178648744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.688 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds