Wall clock time and date at job start Fri Apr 10 2020 13:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 180.02562 * 12 11 10 14 14 H 1.09002 * 110.26939 * 34.29993 * 13 12 11 15 15 C 1.54342 * 110.30119 * 156.37362 * 13 12 11 16 16 C 1.54346 * 102.39313 * 92.57459 * 15 13 12 17 17 C 1.51379 * 105.16783 * 26.35075 * 16 15 13 18 18 C 1.38480 * 130.37461 * 162.81341 * 17 16 15 19 19 C 1.38225 * 120.20042 * 179.97438 * 18 17 16 20 20 Cl 1.73600 * 120.04249 * 180.02562 * 19 18 17 21 21 C 1.38368 * 119.90599 * 0.02562 * 19 18 17 22 22 C 1.38078 * 119.92199 * 0.02562 * 21 19 18 23 23 C 1.38317 * 120.30107 * 0.02562 * 22 21 19 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.00899 * 111.00283 * 303.95539 * 12 11 10 32 32 H 1.08996 * 110.82405 * 210.80077 * 15 13 12 33 33 H 1.08998 * 110.82324 * 334.35451 * 15 13 12 34 34 H 1.08997 * 110.30495 * 145.26869 * 16 15 13 35 35 H 1.09000 * 110.30779 * 267.32815 * 16 15 13 36 36 H 1.07997 * 119.90321 * 359.97438 * 18 17 16 37 37 H 1.07999 * 120.03615 * 180.02562 * 21 19 18 38 38 H 1.08002 * 119.88226 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7343 -7.3950 -0.0018 14 1 0.8115 -7.3241 -0.5777 15 6 2.6446 -8.4979 -0.5825 16 6 3.3218 -9.0682 0.6817 17 6 2.3503 -8.7934 1.8097 18 6 2.2712 -9.3414 3.0790 19 6 1.2835 -8.9295 3.9538 20 17 1.1885 -9.6187 5.5443 21 6 0.3706 -7.9671 3.5600 22 6 0.4483 -7.4211 2.2942 23 6 1.4349 -7.8320 1.4162 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.0690 -6.0367 -0.7836 32 1 2.0534 -9.2638 -1.0844 33 1 3.3848 -8.0724 -1.2601 34 1 3.4821 -10.1409 0.5737 35 1 4.2693 -8.5613 0.8647 36 1 2.9834 -10.0928 3.3863 37 1 -0.4017 -7.6434 4.2420 38 1 -0.2643 -6.6696 1.9876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178648744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:37 Heat of formation + Delta-G solvation = -18.459455 kcal Electronic energy + Delta-G solvation = -18640.364318 eV Core-core repulsion = 15699.510106 eV Total energy + Delta-G solvation = -2940.854212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26175 -38.29380 -37.27442 -36.14550 -34.84138 -32.91771 -31.63213 -29.87958 -28.45914 -26.58270 -24.17770 -23.81340 -22.27986 -21.76791 -21.22422 -18.48714 -17.57685 -17.00898 -16.73878 -16.61158 -16.31267 -15.95416 -15.33228 -14.75430 -14.71014 -14.34002 -14.28976 -14.09462 -13.71233 -13.31929 -12.92924 -12.80951 -12.58807 -12.50318 -12.47945 -12.35879 -12.14756 -11.95046 -11.89398 -11.65491 -11.52615 -11.36464 -11.06394 -10.55132 -9.84287 -9.53928 -9.31601 -8.20341 -6.31511 0.14896 0.31283 1.11286 1.39827 1.43106 1.51029 2.40820 2.56729 3.12707 3.27805 3.48364 3.57467 3.95061 4.02774 4.14745 4.22704 4.30023 4.33419 4.41090 4.61276 4.65365 4.70924 4.77014 4.92453 4.98103 5.04300 5.08582 5.13817 5.21449 5.22869 5.25592 5.33530 5.51674 5.62387 5.74871 5.82370 5.85514 6.04243 6.26653 6.52606 6.85310 7.37766 8.91359 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.003287 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.967508 B = 8516.466858 C = 9408.304554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.091 4.091 11 C 0.074 3.926 12 N -0.679 5.679 13 C 0.117 3.883 14 H 0.051 0.949 15 C -0.113 4.113 16 C -0.071 4.071 17 C -0.079 4.079 18 C -0.108 4.108 19 C -0.041 4.041 20 Cl -0.070 7.070 21 C -0.122 4.122 22 C -0.102 4.102 23 C -0.089 4.089 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.012 1.012 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.026 0.974 31 H 0.352 0.648 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -23.157 2.788 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.312 5.312 13 C 0.007 3.993 14 H 0.069 0.931 15 C -0.151 4.151 16 C -0.108 4.108 17 C -0.079 4.079 18 C -0.126 4.126 19 C -0.068 4.068 20 Cl -0.041 7.041 21 C -0.140 4.140 22 C -0.120 4.120 23 C -0.090 4.090 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.173 0.827 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.818 -23.103 3.589 23.871 hybrid contribution -0.595 1.228 -0.414 1.426 sum 4.223 -21.875 3.175 22.504 Atomic orbital electron populations 1.70094 1.07806 1.27833 1.51663 1.25996 0.95792 1.03403 0.94697 0.85500 0.78290 0.78045 0.79227 1.18986 1.20779 1.19290 1.21683 0.93554 0.92448 1.50595 0.92236 1.18952 0.94400 0.93126 0.94634 1.21358 0.97983 0.92897 1.00674 1.21863 0.94028 0.90223 0.99426 1.60371 1.19748 1.00372 1.50678 1.21058 0.96827 0.90089 0.91302 0.93086 1.22525 0.98537 0.96770 0.97241 1.21052 0.96872 1.02677 0.90183 1.20871 0.96617 0.95770 0.94691 1.20647 0.98283 1.01443 0.92265 1.20836 0.99258 0.99104 0.87584 1.98357 1.97989 1.83849 1.23887 1.21060 0.99639 0.96707 0.96637 1.20717 0.98811 0.99433 0.93081 1.20805 0.95070 0.96307 0.96841 0.92767 0.98993 0.99344 0.93340 0.92711 0.92666 0.95554 0.82721 0.88784 0.88499 0.88397 0.89344 0.83463 0.84065 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.78 5.41 30.59 0.17 -3.62 16 11 C 0.07 2.50 5.52 86.30 0.48 2.98 16 12 N -0.68 -18.19 6.34 -491.94 -3.12 -21.31 16 13 C 0.12 2.62 3.19 44.84 0.14 2.76 16 14 H 0.05 1.19 7.84 -2.39 -0.02 1.17 16 15 C -0.11 -1.69 6.73 31.51 0.21 -1.48 16 16 C -0.07 -1.08 6.77 30.52 0.21 -0.88 16 17 C -0.08 -1.67 6.14 -19.54 -0.12 -1.79 16 18 C -0.11 -2.24 9.82 22.32 0.22 -2.02 16 19 C -0.04 -0.93 6.32 22.30 0.14 -0.79 16 20 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 21 C -0.12 -2.92 9.83 22.26 0.22 -2.71 16 22 C -0.10 -2.64 9.65 22.25 0.21 -2.43 16 23 C -0.09 -2.21 5.72 -19.58 -0.11 -2.32 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 26 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 2.00 7.28 -2.39 -0.02 1.98 16 30 H 0.03 0.89 8.07 -2.39 -0.02 0.87 16 31 H 0.35 8.16 8.06 -89.69 -0.72 7.44 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.20 7.56 -2.39 -0.02 1.18 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.12 3.21 7.60 -2.91 -0.02 3.19 16 Total: -1.00 -65.95 329.67 2.05 -63.90 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.33 Total: 11.09 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 2.61 Total: -41.66 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -2.83 Total: -78.54 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -65.95 2.05 -63.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178648744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.438 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds