Wall clock time and date at job start Fri Apr 10 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48502 * 109.47278 * 240.00254 * 3 2 1 5 5 H 1.48506 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47161 * 119.99929 * 3 2 1 7 7 C 1.37877 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47072 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47106 * 179.97438 * 11 10 9 13 13 C 1.47159 * 110.99925 * 190.00281 * 12 11 10 14 14 C 1.52898 * 108.50892 * 165.35382 * 13 12 11 15 15 C 1.50715 * 109.95247 * 50.47297 * 14 13 12 16 16 C 1.38656 * 118.47718 * 163.03472 * 15 14 13 17 17 C 1.38148 * 120.33693 * 179.56341 * 16 15 14 18 18 Cl 1.73601 * 120.10273 * 180.02562 * 17 16 15 19 19 C 1.38380 * 119.79710 * 0.02562 * 17 16 15 20 20 C 1.37995 * 119.85907 * 0.09735 * 19 17 16 21 21 C 1.37846 * 121.65204 * 342.80742 * 15 14 13 22 22 C 1.46623 * 111.00066 * 66.97751 * 12 11 10 23 23 H 0.96994 * 119.99341 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47471 * 59.99775 * 9 7 2 25 25 H 1.09000 * 109.46997 * 299.99862 * 9 7 2 26 26 H 1.08992 * 109.47443 * 59.99688 * 10 9 7 27 27 H 1.09003 * 109.47013 * 299.99195 * 10 9 7 28 28 H 1.09003 * 109.46736 * 60.00162 * 11 10 9 29 29 H 1.09000 * 109.47231 * 299.99972 * 11 10 9 30 30 H 1.08997 * 109.63589 * 45.64563 * 13 12 11 31 31 H 1.09002 * 109.79277 * 285.15137 * 13 12 11 32 32 H 1.08998 * 109.39214 * 290.32290 * 14 13 12 33 33 H 1.09004 * 109.38925 * 170.62365 * 14 13 12 34 34 H 1.07995 * 119.83144 * 359.60840 * 16 15 14 35 35 H 1.08002 * 120.07052 * 180.37656 * 19 17 16 36 36 H 1.08000 * 119.79864 * 180.02562 * 20 19 17 37 37 H 1.08999 * 109.26620 * 55.70258 * 22 12 11 38 38 H 1.08996 * 109.26864 * 296.22689 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4349 -6.1036 -0.0024 13 6 1.7493 -7.3836 -0.2415 14 6 2.7989 -8.4379 -0.5943 15 6 3.9043 -8.4261 0.4302 16 6 4.7534 -9.5201 0.4991 17 6 5.7850 -9.5458 1.4176 18 17 6.8450 -10.9182 1.4982 19 6 5.9708 -8.4742 2.2732 20 6 5.1241 -7.3867 2.2062 21 6 4.0869 -7.3603 1.2850 22 6 3.1832 -6.1556 1.2575 23 1 -0.4849 0.8400 0.0004 24 1 0.6247 -2.5564 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.8713 -3.6047 0.8889 27 1 2.8726 -3.6039 -0.8910 28 1 0.8541 -5.0447 -0.8923 29 1 0.8533 -5.0450 0.8877 30 1 1.0477 -7.2743 -1.0685 31 1 1.2121 -7.6880 0.6567 32 1 3.2147 -8.2197 -1.5779 33 1 2.3314 -9.4225 -0.6111 34 1 4.6081 -10.3559 -0.1691 35 1 6.7796 -8.4870 2.9889 36 1 5.2702 -6.5507 2.8741 37 1 2.4822 -6.2127 2.0901 38 1 3.7850 -5.2522 1.3559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192246906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:19 Heat of formation + Delta-G solvation = 0.437151 kcal Electronic energy + Delta-G solvation = -18705.991790 eV Core-core repulsion = 15765.956997 eV Total energy + Delta-G solvation = -2940.034794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28007 -37.69634 -36.48987 -34.18902 -32.98902 -31.92693 -30.63039 -29.30679 -26.70725 -24.83040 -23.48150 -22.51380 -22.05074 -19.99588 -19.58515 -17.00535 -16.41735 -16.06744 -15.76437 -14.93737 -14.76762 -14.42377 -14.27139 -14.10068 -13.56525 -13.31581 -13.21756 -12.49853 -12.43845 -12.24617 -12.12410 -11.75717 -11.41546 -11.24709 -11.10887 -11.02463 -10.80165 -10.75533 -10.51577 -10.47678 -9.64680 -9.33537 -9.07215 -9.02726 -8.64880 -8.33921 -8.14090 -5.99408 -4.01515 0.98473 1.10376 1.93227 3.33994 3.38195 3.40893 3.41450 4.00245 4.46813 4.48284 4.59907 4.70619 4.92906 5.04637 5.15772 5.26319 5.35177 5.36502 5.44155 5.61833 5.66823 5.70337 5.73223 5.80802 5.94269 5.99479 6.03704 6.13579 6.26842 6.36449 6.64748 6.67277 6.75739 7.08333 7.24885 7.33069 7.68154 7.82892 8.00876 8.44095 9.05503 9.62508 11.12034 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031903 B = 0.002974 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.441853 B = 9411.695599 C =10065.562976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.055 3.945 12 N -0.533 5.533 13 C 0.049 3.951 14 C -0.075 4.075 15 C -0.056 4.056 16 C -0.113 4.113 17 C -0.038 4.038 18 Cl -0.079 7.079 19 C -0.115 4.115 20 C -0.103 4.103 21 C -0.064 4.064 22 C 0.088 3.912 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.050 0.950 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -21.263 2.847 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.072 4.072 12 N -0.257 5.257 13 C -0.079 4.079 14 C -0.113 4.113 15 C -0.057 4.057 16 C -0.131 4.131 17 C -0.065 4.065 18 Cl -0.050 7.050 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.065 4.065 22 C -0.039 4.039 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.068 0.932 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.727 -21.181 2.460 23.040 hybrid contribution 0.044 0.680 0.716 0.988 sum 8.771 -20.501 3.175 22.523 Atomic orbital electron populations 1.69957 1.06058 1.26675 1.50949 1.25026 0.94846 0.99244 0.95367 0.86662 0.79583 0.83139 0.78641 1.20212 1.21318 1.20259 1.21216 0.93017 0.91053 1.50470 0.92727 1.19066 0.94011 0.91374 0.97092 1.21655 0.99181 0.92650 1.00827 1.22367 0.93507 0.90757 1.00541 1.62372 1.27346 1.03175 1.32780 1.22152 0.95331 0.89736 1.00715 1.20575 0.93927 0.98986 0.97787 1.19556 0.96779 0.92612 0.96708 1.20961 0.94484 0.99098 0.98589 1.20807 0.95076 0.90373 1.00209 1.98359 1.65328 1.43399 1.97932 1.20930 1.00446 0.92670 0.99281 1.21059 0.94352 0.98155 0.98632 1.19834 0.96216 0.95285 0.95123 1.21046 0.95736 0.95908 0.91252 0.92980 0.96591 0.96835 0.93527 0.92494 0.90838 0.95082 0.89999 0.94554 0.89432 0.90403 0.85162 0.85051 0.84877 0.93233 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.14 5.09 -26.73 -0.14 -2.27 16 11 C 0.06 0.92 4.95 -3.82 -0.02 0.90 16 12 N -0.53 -7.71 4.68 -236.20 -1.10 -8.82 16 13 C 0.05 0.58 5.57 -3.73 -0.02 0.55 16 14 C -0.08 -0.77 5.94 -27.93 -0.17 -0.94 16 15 C -0.06 -0.64 5.77 -104.60 -0.60 -1.25 16 16 C -0.11 -1.19 9.44 -39.46 -0.37 -1.56 16 17 C -0.04 -0.41 6.32 -39.56 -0.25 -0.66 16 18 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 19 C -0.11 -1.18 9.84 -39.62 -0.39 -1.57 16 20 C -0.10 -1.12 9.65 -39.48 -0.38 -1.50 16 21 C -0.06 -0.78 5.79 -104.62 -0.61 -1.39 16 22 C 0.09 1.19 4.91 -5.16 -0.03 1.16 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.21 7.89 -51.93 -0.41 0.80 16 29 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 30 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 31 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.10 1.38 6.65 -51.93 -0.35 1.03 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -30.06 324.76 -11.20 -41.26 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.69 Total: -3.92 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -3.52 Total: -21.59 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.37 Total: -35.04 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.06 -11.20 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192246906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.697 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds