Wall clock time and date at job start Fri Apr 10 2020 14:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48502 * 109.47278 * 240.00254 * 3 2 1 5 5 H 1.48506 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47161 * 119.99929 * 3 2 1 7 7 C 1.37877 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47072 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47106 * 179.97438 * 11 10 9 13 13 C 1.47159 * 110.99925 * 190.00281 * 12 11 10 14 14 C 1.52898 * 108.50892 * 165.35382 * 13 12 11 15 15 C 1.50715 * 109.95247 * 50.47297 * 14 13 12 16 16 C 1.38656 * 118.47718 * 163.03472 * 15 14 13 17 17 C 1.38148 * 120.33693 * 179.56341 * 16 15 14 18 18 Cl 1.73601 * 120.10273 * 180.02562 * 17 16 15 19 19 C 1.38380 * 119.79710 * 0.02562 * 17 16 15 20 20 C 1.37995 * 119.85907 * 0.09735 * 19 17 16 21 21 C 1.37846 * 121.65204 * 342.80742 * 15 14 13 22 22 C 1.46623 * 111.00066 * 66.97751 * 12 11 10 23 23 H 0.96994 * 119.99341 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47471 * 59.99775 * 9 7 2 25 25 H 1.09000 * 109.46997 * 299.99862 * 9 7 2 26 26 H 1.08992 * 109.47443 * 59.99688 * 10 9 7 27 27 H 1.09003 * 109.47013 * 299.99195 * 10 9 7 28 28 H 1.09003 * 109.46736 * 60.00162 * 11 10 9 29 29 H 1.09000 * 109.47231 * 299.99972 * 11 10 9 30 30 H 1.08997 * 109.63589 * 45.64563 * 13 12 11 31 31 H 1.09002 * 109.79277 * 285.15137 * 13 12 11 32 32 H 1.08998 * 109.39214 * 290.32290 * 14 13 12 33 33 H 1.09004 * 109.38925 * 170.62365 * 14 13 12 34 34 H 1.07995 * 119.83144 * 359.60840 * 16 15 14 35 35 H 1.08002 * 120.07052 * 180.37656 * 19 17 16 36 36 H 1.08000 * 119.79864 * 180.02562 * 20 19 17 37 37 H 1.08999 * 109.26620 * 55.70258 * 22 12 11 38 38 H 1.08996 * 109.26864 * 296.22689 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4349 -6.1036 -0.0024 13 6 1.7493 -7.3836 -0.2415 14 6 2.7989 -8.4379 -0.5943 15 6 3.9043 -8.4261 0.4302 16 6 4.7534 -9.5201 0.4991 17 6 5.7850 -9.5458 1.4176 18 17 6.8450 -10.9182 1.4982 19 6 5.9708 -8.4742 2.2732 20 6 5.1241 -7.3867 2.2062 21 6 4.0869 -7.3603 1.2850 22 6 3.1832 -6.1556 1.2575 23 1 -0.4849 0.8400 0.0004 24 1 0.6247 -2.5564 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.8713 -3.6047 0.8889 27 1 2.8726 -3.6039 -0.8910 28 1 0.8541 -5.0447 -0.8923 29 1 0.8533 -5.0450 0.8877 30 1 1.0477 -7.2743 -1.0685 31 1 1.2121 -7.6880 0.6567 32 1 3.2147 -8.2197 -1.5779 33 1 2.3314 -9.4225 -0.6111 34 1 4.6081 -10.3559 -0.1691 35 1 6.7796 -8.4870 2.9889 36 1 5.2702 -6.5507 2.8741 37 1 2.4822 -6.2127 2.0901 38 1 3.7850 -5.2522 1.3559 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192246906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:18 Heat of formation + Delta-G solvation = -15.246667 kcal Electronic energy + Delta-G solvation = -18706.671892 eV Core-core repulsion = 15765.956997 eV Total energy + Delta-G solvation = -2940.714895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17086 -38.71768 -37.35397 -35.87076 -34.33891 -33.24975 -31.92520 -30.28269 -28.33306 -26.15274 -24.63921 -23.62370 -23.22696 -21.66564 -20.52433 -18.48474 -17.83018 -17.13062 -16.79765 -16.52034 -15.85128 -15.65364 -15.60090 -15.22012 -14.55209 -14.45408 -14.14244 -14.08026 -13.78393 -13.42446 -13.21486 -13.06285 -12.88108 -12.58096 -12.49435 -12.40952 -12.08529 -11.92311 -11.91498 -11.58595 -11.40709 -11.32089 -11.04295 -10.53473 -9.84452 -9.53725 -9.23691 -8.19281 -6.30006 0.13870 0.29975 1.14112 1.40602 1.43548 1.51444 2.41573 2.57968 2.89941 3.13917 3.65525 3.70697 3.90397 4.04241 4.16282 4.22779 4.30896 4.42188 4.43442 4.51153 4.58720 4.69894 4.72592 4.83546 4.89214 4.96820 5.00125 5.09201 5.16167 5.22130 5.23942 5.30306 5.52033 5.55161 5.76137 5.82662 5.87508 6.09700 6.11326 6.28963 6.86836 7.39139 8.92407 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031903 B = 0.002974 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.441853 B = 9411.695599 C =10065.562976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.089 4.089 11 C 0.067 3.933 12 N -0.541 5.541 13 C 0.047 3.953 14 C -0.071 4.071 15 C -0.066 4.066 16 C -0.114 4.114 17 C -0.045 4.045 18 Cl -0.071 7.071 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.083 4.083 22 C 0.090 3.910 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.009 1.009 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.048 0.952 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -22.212 2.866 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.060 4.060 12 N -0.265 5.265 13 C -0.081 4.081 14 C -0.108 4.108 15 C -0.067 4.067 16 C -0.132 4.132 17 C -0.071 4.071 18 Cl -0.042 7.042 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.083 4.083 22 C -0.037 4.037 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.009 0.991 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.066 0.934 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.054 -22.153 2.479 24.454 hybrid contribution -0.353 0.911 0.723 1.216 sum 9.701 -21.242 3.202 23.570 Atomic orbital electron populations 1.70087 1.07754 1.27812 1.51733 1.25969 0.95770 1.03301 0.94756 0.85529 0.78313 0.78188 0.79200 1.19242 1.20801 1.19138 1.21674 0.93504 0.92472 1.50487 0.92354 1.18961 0.94383 0.92979 0.94795 1.21387 0.97974 0.92784 1.00600 1.22076 0.93329 0.90075 1.00528 1.62302 1.26992 1.03693 1.33473 1.22262 0.95979 0.88679 1.01175 1.20589 0.93214 0.99641 0.97310 1.19739 0.97394 0.92677 0.96846 1.21137 0.94098 0.99266 0.98733 1.20982 0.95230 0.90714 1.00219 1.98362 1.65038 1.42934 1.97900 1.21149 1.00652 0.92272 0.99467 1.21229 0.94043 0.98833 0.98539 1.19834 0.96821 0.95184 0.96468 1.20983 0.95718 0.96290 0.90749 0.92770 0.98899 0.99067 0.93219 0.93097 0.90720 0.95317 0.89192 0.94270 0.89383 0.87789 0.83415 0.83343 0.83734 0.93371 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.40 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.69 5.09 30.59 0.16 -3.54 16 11 C 0.07 2.26 4.95 86.31 0.43 2.69 16 12 N -0.54 -15.33 4.68 -901.22 -4.21 -19.54 16 13 C 0.05 1.03 5.57 86.22 0.48 1.51 16 14 C -0.07 -1.29 5.94 29.82 0.18 -1.12 16 15 C -0.07 -1.40 5.77 -19.85 -0.11 -1.52 16 16 C -0.11 -2.15 9.44 22.35 0.21 -1.94 16 17 C -0.04 -0.87 6.32 22.28 0.14 -0.73 16 18 Cl -0.07 -1.24 28.96 -2.72 -0.08 -1.32 16 19 C -0.12 -2.19 9.84 22.25 0.22 -1.97 16 20 C -0.11 -2.21 9.65 22.33 0.22 -2.00 16 21 C -0.08 -1.94 5.79 -19.86 -0.12 -2.05 16 22 C 0.09 2.40 4.91 85.59 0.42 2.82 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.05 2.00 6.66 -2.39 -0.02 1.98 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.47 7.89 -2.39 -0.02 2.45 16 29 H 0.03 0.97 8.06 -2.39 -0.02 0.95 16 30 H 0.09 1.83 7.85 -2.39 -0.02 1.81 16 31 H 0.04 0.85 8.06 -2.39 -0.02 0.83 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.05 1.27 8.07 -2.39 -0.02 1.25 16 38 H 0.09 2.42 6.65 -2.39 -0.02 2.41 16 Total: -1.00 -64.16 324.76 2.11 -62.05 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.03 Total: 5.92 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 3.06 Total: -36.82 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -3.93 Total: -76.28 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -64.16 2.11 -62.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192246906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.804 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds