Wall clock time and date at job start Fri Apr 10 2020 14:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99800 * 179.97438 * 12 11 10 14 14 H 1.09011 * 110.26440 * 35.62009 * 13 12 11 15 15 C 1.54338 * 110.30412 * 157.79722 * 13 12 11 16 16 C 1.54337 * 102.39411 * 145.27791 * 15 13 12 17 17 C 1.51381 * 105.17105 * 333.64704 * 16 15 13 18 18 C 1.38499 * 130.37644 * 197.16971 * 17 16 15 19 19 C 1.38083 * 120.23606 * 180.02562 * 18 17 16 20 20 C 1.38373 * 119.91569 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 120.04305 * 180.02562 * 20 19 18 22 22 C 1.38212 * 119.90966 * 359.97438 * 20 19 18 23 23 C 1.38225 * 109.74942 * 17.19160 * 17 16 15 24 24 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 27 27 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 29 29 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 30 30 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 31 31 H 1.00891 * 111.00138 * 56.04633 * 12 11 10 32 32 H 1.09004 * 110.82389 * 263.49900 * 15 13 12 33 33 H 1.09003 * 110.82337 * 27.05045 * 15 13 12 34 34 H 1.09006 * 110.30937 * 214.72657 * 16 15 13 35 35 H 1.09002 * 110.39085 * 92.61201 * 16 15 13 36 36 H 1.08006 * 119.88304 * 0.02562 * 18 17 16 37 37 H 1.07998 * 120.04016 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.89941 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 7.5098 -4.0606 0.0033 14 1 7.9092 -3.2395 0.5989 15 6 8.0092 -5.4144 0.5508 16 6 9.2803 -5.6627 -0.2887 17 6 9.0551 -4.9077 -1.5813 18 6 9.6906 -5.0176 -2.8070 19 6 9.3116 -4.2109 -3.8616 20 6 8.2936 -3.2888 -3.6939 21 17 7.8139 -2.2734 -5.0178 22 6 7.6585 -3.1780 -2.4714 23 6 8.0377 -3.9872 -1.4134 24 1 -0.4849 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8753 -0.6803 -0.8888 27 1 3.6587 -3.1502 -0.8892 28 1 3.6580 -3.1505 0.8907 29 1 5.9157 -2.1223 -0.8873 30 1 5.9142 -2.1228 0.8927 31 1 5.6665 -4.5377 -0.7788 32 1 8.2536 -5.3376 1.6103 33 1 7.2716 -6.1982 0.3780 34 1 9.3997 -6.7276 -0.4886 35 1 10.1583 -5.2747 0.2278 36 1 10.4856 -5.7368 -2.9383 37 1 9.8090 -4.2995 -4.8161 38 1 6.8636 -2.4586 -2.3408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343102746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:20 Heat of formation + Delta-G solvation = -16.427571 kcal Electronic energy + Delta-G solvation = -18824.574877 eV Core-core repulsion = 15883.808774 eV Total energy + Delta-G solvation = -2940.766103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.37455 -38.23041 -37.37147 -36.16707 -34.91372 -33.21267 -31.70800 -29.85456 -28.78471 -26.44882 -23.83452 -23.80641 -22.20516 -21.95873 -21.20311 -18.93138 -18.09906 -16.87558 -16.61610 -16.37531 -16.21686 -16.11102 -15.30758 -14.97247 -14.67519 -14.61013 -14.37507 -13.97712 -13.63494 -13.49667 -13.06867 -12.80082 -12.59854 -12.53356 -12.48046 -12.38270 -12.25127 -11.89305 -11.81660 -11.58979 -11.51459 -11.43651 -11.22015 -10.77637 -10.04420 -9.56768 -9.25372 -8.30542 -6.34690 0.10397 0.22173 1.09893 1.34277 1.35943 1.48201 2.34955 2.54007 3.04725 3.16009 3.42969 3.60978 3.84724 4.06028 4.17412 4.19816 4.23690 4.33833 4.37453 4.55387 4.61127 4.67550 4.77422 4.88110 4.94845 4.96549 5.02471 5.09126 5.10565 5.23006 5.29281 5.34392 5.49759 5.53865 5.59129 5.65283 5.79417 6.06658 6.28322 6.38818 6.73472 7.29899 8.86572 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.004211 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.868456 B = 6648.135443 C = 7917.824451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.010 4.010 10 C -0.090 4.090 11 C 0.066 3.934 12 N -0.678 5.678 13 C 0.123 3.877 14 H 0.092 0.908 15 C -0.102 4.102 16 C -0.076 4.076 17 C -0.087 4.087 18 C -0.095 4.095 19 C -0.110 4.110 20 C -0.051 4.051 21 Cl -0.079 7.079 22 C -0.115 4.115 23 C -0.130 4.130 24 H 0.266 0.734 25 H 0.021 0.979 26 H 0.015 0.985 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.342 0.658 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.594 -11.474 -4.620 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.063 4.063 12 N -0.307 5.307 13 C 0.013 3.987 14 H 0.110 0.890 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.088 4.088 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.077 4.077 21 Cl -0.050 7.050 22 C -0.134 4.134 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.179 0.821 37 H 0.170 0.830 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 26.332 -11.346 -4.025 28.953 hybrid contribution -0.607 1.459 -1.340 2.072 sum 25.724 -9.887 -5.366 28.076 Atomic orbital electron populations 1.70071 1.08328 1.28175 1.52739 1.26040 0.95633 1.03574 0.94087 0.85643 0.79579 0.78177 0.79168 1.19309 1.20753 1.16882 1.21511 0.92236 0.93064 1.50322 0.95187 1.19485 0.93845 0.95064 0.96378 1.21260 0.93970 0.96874 1.00734 1.22022 0.94631 0.89412 1.00267 1.60680 1.06865 1.13349 1.49771 1.21379 0.87011 1.00359 0.89970 0.88963 1.22329 0.96394 0.94789 1.00461 1.21152 0.98842 1.00855 0.90484 1.21056 0.94926 0.96544 0.96267 1.20933 1.00307 0.99364 0.90692 1.21239 0.95925 0.94598 1.01064 1.20928 0.99970 0.97454 0.89388 1.98375 1.91532 1.68029 1.47066 1.20686 1.00551 1.00359 0.91821 1.21509 0.98439 0.96516 0.96743 0.92478 0.96036 0.96667 0.93822 0.92938 0.95281 0.90915 0.83977 0.88746 0.90454 0.88446 0.88189 0.82112 0.82952 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.96 16 2 C 0.00 0.19 5.47 84.65 0.46 0.65 16 3 Si 0.95 45.37 27.47 68.60 1.88 47.25 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.62 5.41 30.60 0.17 -3.46 16 11 C 0.07 2.05 5.46 86.31 0.47 2.52 16 12 N -0.68 -17.79 6.26 -491.95 -3.08 -20.87 16 13 C 0.12 2.57 3.18 44.83 0.14 2.71 16 14 H 0.09 1.95 7.86 -2.38 -0.02 1.93 16 15 C -0.10 -1.54 6.77 31.50 0.21 -1.32 16 16 C -0.08 -0.88 6.77 30.52 0.21 -0.67 16 17 C -0.09 -1.46 6.14 -19.59 -0.12 -1.58 16 18 C -0.10 -1.39 10.04 22.30 0.22 -1.17 16 19 C -0.11 -1.91 9.83 22.27 0.22 -1.69 16 20 C -0.05 -1.16 6.32 22.30 0.14 -1.02 16 21 Cl -0.08 -1.86 28.96 -2.72 -0.08 -1.94 16 22 C -0.12 -2.86 9.47 22.32 0.21 -2.65 16 23 C -0.13 -2.81 5.52 -19.60 -0.11 -2.92 16 24 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 26 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.03 0.91 5.64 -2.39 -0.01 0.89 16 30 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 31 H 0.34 9.10 8.48 -89.70 -0.76 8.34 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 34 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.12 3.23 5.87 -2.91 -0.02 3.22 16 Total: -1.00 -68.51 323.38 1.86 -66.64 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.24 Total: 12.41 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 2.60 Total: -42.54 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.78 Total: -81.82 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -68.51 1.86 -66.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343102746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.215 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds