Wall clock time and date at job start Fri Apr 10 2020 13:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.26674 * 324.38580 * 13 12 11 15 15 C 1.54344 * 110.29937 * 202.20386 * 13 12 11 16 16 C 1.54349 * 102.39188 * 214.72440 * 15 13 12 17 17 C 1.51364 * 105.17180 * 26.35263 * 16 15 13 18 18 C 1.38242 * 109.75972 * 342.80941 * 17 16 15 19 19 C 1.38458 * 119.85906 * 180.02562 * 18 17 16 20 20 C 1.38152 * 120.24078 * 359.95962 * 19 18 17 21 21 C 1.38184 * 119.95553 * 0.03592 * 20 19 18 22 22 C 1.38272 * 119.91610 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 119.90785 * 179.97438 * 22 21 20 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.00899 * 111.00283 * 303.95539 * 12 11 10 32 32 H 1.08993 * 110.82695 * 332.94851 * 15 13 12 33 33 H 1.09000 * 110.82089 * 96.50348 * 15 13 12 34 34 H 1.09004 * 110.30841 * 267.42991 * 16 15 13 35 35 H 1.09005 * 110.38733 * 145.32026 * 16 15 13 36 36 H 1.08002 * 119.87998 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.02466 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.04506 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7343 -7.3950 -0.0018 14 1 0.8239 -7.3307 0.5940 15 6 2.6574 -8.5048 0.5446 16 6 2.2365 -9.7292 -0.2956 17 6 1.6948 -9.1559 -1.5875 18 6 1.4062 -7.8145 -1.4188 19 6 0.8953 -7.0810 -2.4761 20 6 0.6738 -7.6846 -3.6989 21 6 0.9619 -9.0254 -3.8688 22 6 1.4720 -9.7601 -2.8144 23 17 1.8333 -11.4446 -3.0280 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.0690 -6.0367 -0.7836 32 1 3.7047 -8.2578 0.3716 33 1 2.4690 -8.6787 1.6041 34 1 1.4612 -10.2946 0.2216 35 1 3.0979 -10.3663 -0.4963 36 1 0.6693 -6.0331 -2.3446 37 1 0.2747 -7.1093 -4.5212 38 1 0.7889 -9.4988 -4.8240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531705084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:45 Heat of formation + Delta-G solvation = -18.698146 kcal Electronic energy + Delta-G solvation = -18716.101389 eV Core-core repulsion = 15775.236826 eV Total energy + Delta-G solvation = -2940.864562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39491 -38.14143 -37.23773 -36.36081 -34.99836 -32.93610 -31.34312 -30.02507 -28.53761 -26.50357 -24.10091 -23.71469 -22.27059 -22.04283 -21.21244 -18.51663 -18.03269 -16.89391 -16.56205 -16.36496 -16.35849 -16.20615 -15.30416 -14.94299 -14.69669 -14.37154 -14.19030 -13.87212 -13.55383 -13.33997 -12.87534 -12.76333 -12.68515 -12.58771 -12.45645 -12.44384 -12.26657 -12.10214 -11.86052 -11.74065 -11.53247 -11.35390 -11.03677 -10.55528 -9.88771 -9.64260 -9.27740 -8.20139 -6.30802 0.10592 0.20848 1.12889 1.40141 1.40476 1.53977 2.41108 2.53851 3.13162 3.16646 3.36540 3.59134 3.93433 4.01828 4.08174 4.20950 4.32028 4.37091 4.43213 4.46907 4.58924 4.73133 4.78286 4.87336 4.98562 5.01946 5.06941 5.10192 5.22556 5.24883 5.29488 5.36830 5.46011 5.53399 5.75945 5.76729 5.86662 6.04795 6.27573 6.41976 6.86423 7.38510 8.91900 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034246 B = 0.003033 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.414770 B = 9230.526269 C = 9743.672397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.068 3.932 12 N -0.674 5.674 13 C 0.123 3.877 14 H 0.090 0.910 15 C -0.098 4.098 16 C -0.077 4.077 17 C -0.090 4.090 18 C -0.127 4.127 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.035 4.035 23 Cl -0.069 7.069 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.344 0.656 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.152 0.848 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -23.239 -5.222 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.061 4.061 12 N -0.303 5.303 13 C 0.013 3.987 14 H 0.108 0.892 15 C -0.136 4.136 16 C -0.114 4.114 17 C -0.091 4.091 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.129 4.129 21 C -0.130 4.130 22 C -0.062 4.062 23 Cl -0.040 7.040 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.169 0.831 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.373 -23.263 -4.529 23.938 hybrid contribution -0.408 1.034 -1.090 1.556 sum 2.965 -22.229 -5.619 23.119 Atomic orbital electron populations 1.70103 1.07758 1.27675 1.51858 1.25980 0.95784 1.03349 0.94780 0.85407 0.79095 0.78807 0.77804 1.18629 1.20334 1.20346 1.21731 0.93518 0.92452 1.50262 0.92333 1.18960 0.94384 0.93040 0.94755 1.21372 0.98012 0.92965 1.00681 1.21974 0.94108 0.90127 0.99878 1.60684 1.19145 1.00743 1.49744 1.21329 0.97415 0.89867 0.90070 0.89163 1.22307 0.99681 0.91340 1.00305 1.21128 1.01503 0.98159 0.90614 1.20614 0.99348 0.94480 0.94673 1.21552 0.99358 0.94451 0.97515 1.21070 0.98813 1.00335 0.93163 1.21283 0.99574 0.94476 0.97541 1.21231 0.98929 0.94101 0.98733 1.20688 1.04654 0.85939 0.94880 1.98355 1.93382 1.14900 1.97409 0.92788 0.99030 0.99042 0.92875 0.93276 0.91892 0.95343 0.83802 0.90162 0.88631 0.88663 0.89320 0.86309 0.83070 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.80 5.41 30.59 0.17 -3.63 16 11 C 0.07 2.28 5.46 86.30 0.47 2.75 16 12 N -0.67 -18.47 6.26 -491.95 -3.08 -21.55 16 13 C 0.12 2.84 3.18 44.84 0.14 2.98 16 14 H 0.09 2.15 7.86 -2.39 -0.02 2.14 16 15 C -0.10 -1.76 6.77 31.51 0.21 -1.55 16 16 C -0.08 -1.28 6.47 30.52 0.20 -1.08 16 17 C -0.09 -1.89 6.05 -19.57 -0.12 -2.01 16 18 C -0.13 -2.97 5.52 -19.60 -0.11 -3.08 16 19 C -0.12 -2.79 9.68 22.30 0.22 -2.57 16 20 C -0.11 -2.24 10.04 22.24 0.22 -2.02 16 21 C -0.11 -2.10 9.83 22.26 0.22 -1.89 16 22 C -0.04 -0.71 6.32 22.36 0.14 -0.57 16 23 Cl -0.07 -1.24 28.71 -2.72 -0.08 -1.32 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 30 H 0.03 0.95 5.65 -2.39 -0.01 0.94 16 31 H 0.34 9.22 8.48 -89.69 -0.76 8.45 16 32 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.12 3.12 5.87 -2.91 -0.02 3.10 16 37 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -63.72 326.57 2.05 -61.66 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.30 Total: 13.12 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 2.61 Total: -41.67 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -2.80 Total: -78.35 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -63.72 2.05 -61.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531705084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.963 kcal (2) G-P(sol) polarization free energy of solvation -63.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds