Wall clock time and date at job start Fri Apr 10 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99738 * 2 1 4 4 H 1.48500 * 109.46873 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.47345 * 29.99461 * 3 2 1 6 6 H 1.48503 * 109.47299 * 149.99813 * 3 2 1 7 7 C 1.37878 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47222 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99862 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00401 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00413 * 180.02562 * 14 12 11 16 16 C 1.53777 * 113.61922 * 155.00287 * 15 14 12 17 17 C 1.53778 * 87.08479 * 89.11495 * 16 15 14 18 18 C 1.52997 * 113.61679 * 139.98340 * 17 16 15 19 19 F 1.39905 * 109.47157 * 61.52895 * 18 17 16 20 20 F 1.39900 * 109.47010 * 301.53286 * 18 17 16 21 21 F 1.39897 * 109.47422 * 181.52978 * 18 17 16 22 22 C 1.53783 * 87.17189 * 25.39160 * 17 16 15 23 23 H 0.96996 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47163 * 60.00052 * 9 7 2 25 25 H 1.09000 * 109.47462 * 300.00219 * 9 7 2 26 26 H 1.08999 * 109.47038 * 59.99983 * 10 9 7 27 27 H 1.09003 * 109.46823 * 299.99732 * 10 9 7 28 28 H 1.08999 * 109.47210 * 60.00086 * 11 10 9 29 29 H 1.09000 * 109.47504 * 300.00199 * 11 10 9 30 30 H 0.97006 * 119.99722 * 0.02562 * 14 12 11 31 31 H 1.08998 * 112.90893 * 23.74734 * 15 14 12 32 32 H 1.09006 * 113.61080 * 334.56445 * 16 15 14 33 33 H 1.08997 * 113.61849 * 203.66936 * 16 15 14 34 34 H 1.09007 * 113.61285 * 270.80692 * 17 16 15 35 35 H 1.09000 * 113.61048 * 89.16040 * 22 17 16 36 36 H 1.09003 * 113.61260 * 220.06009 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 -0.0001 12 6 2.4598 -6.1324 -0.0007 13 8 3.6522 -5.9108 -0.0002 14 7 2.0107 -7.4031 -0.0009 15 6 2.9627 -8.5166 -0.0009 16 6 2.3924 -9.8148 0.5944 17 6 1.9076 -10.1594 -0.8237 18 6 2.0794 -11.6353 -1.1884 19 9 1.3209 -12.4227 -0.3156 20 9 3.4289 -11.9881 -1.0813 21 9 1.6455 -11.8447 -2.5018 22 6 3.0396 -9.2597 -1.3471 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8721 -3.6042 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8542 -5.0445 -0.8903 29 1 0.8535 -5.0451 0.8896 30 1 1.0570 -7.5804 -0.0009 31 1 3.9369 -8.2419 0.4035 32 1 1.5823 -9.6503 1.3049 33 1 3.1563 -10.4945 0.9719 34 1 0.9102 -9.7812 -1.0481 35 1 3.9808 -9.7874 -1.5014 36 1 2.7512 -8.6477 -2.2018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594360984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:35 Heat of formation + Delta-G solvation = -194.958144 kcal Electronic energy + Delta-G solvation = -21240.697616 eV Core-core repulsion = 17309.623941 eV Total energy + Delta-G solvation = -3931.073674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.43029 -47.94080 -47.90640 -40.38085 -38.45057 -34.21719 -33.43839 -32.00085 -28.70309 -27.51715 -26.34046 -24.20234 -23.16139 -21.11626 -20.00033 -19.82443 -18.78409 -18.69335 -18.03515 -16.82471 -16.27640 -16.04324 -15.42583 -15.04084 -14.83410 -14.50246 -14.40513 -14.35338 -14.11681 -14.08413 -13.84353 -13.51910 -13.42137 -12.99585 -12.72629 -12.28730 -11.87985 -11.65932 -11.41960 -11.19515 -10.94758 -10.81880 -10.63492 -10.54417 -9.77603 -9.70544 -9.30253 -9.18946 -9.04071 -8.33268 -5.98972 -4.00436 2.40696 2.78370 3.05966 3.34096 3.35715 3.40026 3.42293 3.44764 3.60298 4.03962 4.26593 4.34756 4.48185 4.51766 5.00140 5.08688 5.13941 5.31663 5.37237 5.37871 5.50007 5.61669 5.66826 5.70794 6.21487 6.38450 6.69517 6.89972 7.13628 7.46318 7.69224 7.81631 8.01584 8.34411 8.45524 9.06738 9.63708 11.12545 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.051670 B = 0.002507 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.767473 B =11163.912341 C =11316.038052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.516 3.484 13 O -0.532 6.532 14 N -0.726 5.726 15 C 0.129 3.871 16 C -0.133 4.133 17 C -0.168 4.168 18 C 0.459 3.541 19 F -0.184 7.184 20 F -0.182 7.182 21 F -0.184 7.184 22 C -0.142 4.142 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.400 0.600 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -25.304 -0.937 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.178 4.178 12 C 0.305 3.695 13 O -0.407 6.407 14 N -0.379 5.379 15 C 0.022 3.978 16 C -0.171 4.171 17 C -0.187 4.187 18 C 0.405 3.595 19 F -0.166 7.166 20 F -0.163 7.163 21 F -0.166 7.166 22 C -0.181 4.181 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.235 0.765 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.151 0.849 35 H 0.122 0.878 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.062 -25.028 -0.934 25.130 hybrid contribution -0.210 0.404 -0.178 0.489 sum 1.851 -24.624 -1.112 24.718 Atomic orbital electron populations 1.69957 1.06047 1.26571 1.51187 1.25020 0.94855 0.99267 0.95366 0.86592 0.79904 0.83403 0.78115 1.20670 1.21258 1.19825 1.21272 0.93200 0.91016 1.50188 0.92567 1.19130 0.93955 0.91463 0.97125 1.21456 0.98663 0.91497 1.01736 1.21861 0.98117 0.93980 1.03875 1.21337 0.90484 0.83551 0.74144 1.90687 1.17353 1.84562 1.48139 1.45875 1.09446 1.05292 1.77242 1.21647 0.95273 0.85592 0.95272 1.23368 1.02181 0.97556 0.94014 1.24141 1.04364 0.88788 1.01447 1.20462 0.73619 0.90960 0.74427 1.93187 1.76214 1.77567 1.69597 1.93161 1.33931 1.93439 1.95785 1.93191 1.89579 1.96059 1.37735 1.23583 0.97519 0.97259 0.99725 0.93051 0.96620 0.96593 0.92655 0.92675 0.89252 0.89214 0.76513 0.86884 0.89064 0.87656 0.84911 0.87751 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C -0.14 -2.13 5.70 -27.89 -0.16 -2.29 16 12 C 0.52 7.54 7.83 -10.99 -0.09 7.45 16 13 O -0.53 -9.97 15.58 5.56 0.09 -9.89 16 14 N -0.73 -7.13 5.26 -52.93 -0.28 -7.41 16 15 C 0.13 1.11 4.33 -67.03 -0.29 0.82 16 16 C -0.13 -0.81 7.20 -25.92 -0.19 -1.00 16 17 C -0.17 -1.06 3.67 -89.81 -0.33 -1.39 16 18 C 0.46 3.60 3.01 37.16 0.11 3.71 16 19 F -0.18 -1.57 17.20 2.25 0.04 -1.53 16 20 F -0.18 -1.55 15.74 2.25 0.04 -1.51 16 21 F -0.18 -1.66 17.32 2.25 0.04 -1.62 16 22 C -0.14 -1.08 7.33 -25.82 -0.19 -1.26 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 2.78 8.70 -40.82 -0.36 2.42 16 31 H 0.11 1.18 7.47 -51.93 -0.39 0.80 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.59 7.83 -51.93 -0.41 0.18 16 34 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.76 7.18 -51.93 -0.37 0.38 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -32.98 318.72 -6.22 -39.20 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.86 Total: -3.35 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.80 Total: -9.37 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.46 Total: -33.59 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.11 Total: -4.67 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.98 -6.22 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594360984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.755 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds