Wall clock time and date at job start Fri Apr 10 2020 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99738 * 2 1 4 4 H 1.48500 * 109.46873 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.47345 * 29.99461 * 3 2 1 6 6 H 1.48503 * 109.47299 * 149.99813 * 3 2 1 7 7 C 1.37878 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47222 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99862 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00401 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00413 * 180.02562 * 14 12 11 16 16 C 1.53777 * 113.61922 * 155.00287 * 15 14 12 17 17 C 1.53778 * 87.08479 * 89.11495 * 16 15 14 18 18 C 1.52997 * 113.61679 * 139.98340 * 17 16 15 19 19 F 1.39905 * 109.47157 * 61.52895 * 18 17 16 20 20 F 1.39900 * 109.47010 * 301.53286 * 18 17 16 21 21 F 1.39897 * 109.47422 * 181.52978 * 18 17 16 22 22 C 1.53783 * 87.17189 * 25.39160 * 17 16 15 23 23 H 0.96996 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47163 * 60.00052 * 9 7 2 25 25 H 1.09000 * 109.47462 * 300.00219 * 9 7 2 26 26 H 1.08999 * 109.47038 * 59.99983 * 10 9 7 27 27 H 1.09003 * 109.46823 * 299.99732 * 10 9 7 28 28 H 1.08999 * 109.47210 * 60.00086 * 11 10 9 29 29 H 1.09000 * 109.47504 * 300.00199 * 11 10 9 30 30 H 0.97006 * 119.99722 * 0.02562 * 14 12 11 31 31 H 1.08998 * 112.90893 * 23.74734 * 15 14 12 32 32 H 1.09006 * 113.61080 * 334.56445 * 16 15 14 33 33 H 1.08997 * 113.61849 * 203.66936 * 16 15 14 34 34 H 1.09007 * 113.61285 * 270.80692 * 17 16 15 35 35 H 1.09000 * 113.61048 * 89.16040 * 22 17 16 36 36 H 1.09003 * 113.61260 * 220.06009 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 -0.0001 12 6 2.4598 -6.1324 -0.0007 13 8 3.6522 -5.9108 -0.0002 14 7 2.0107 -7.4031 -0.0009 15 6 2.9627 -8.5166 -0.0009 16 6 2.3924 -9.8148 0.5944 17 6 1.9076 -10.1594 -0.8237 18 6 2.0794 -11.6353 -1.1884 19 9 1.3209 -12.4227 -0.3156 20 9 3.4289 -11.9881 -1.0813 21 9 1.6455 -11.8447 -2.5018 22 6 3.0396 -9.2597 -1.3471 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8721 -3.6042 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8542 -5.0445 -0.8903 29 1 0.8535 -5.0451 0.8896 30 1 1.0570 -7.5804 -0.0009 31 1 3.9369 -8.2419 0.4035 32 1 1.5823 -9.6503 1.3049 33 1 3.1563 -10.4945 0.9719 34 1 0.9102 -9.7812 -1.0481 35 1 3.9808 -9.7874 -1.5014 36 1 2.7512 -8.6477 -2.2018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594360984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:34 Heat of formation + Delta-G solvation = -215.743918 kcal Electronic energy + Delta-G solvation = -21241.598955 eV Core-core repulsion = 17309.623941 eV Total energy + Delta-G solvation = -3931.975013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.06635 -48.58506 -48.55126 -41.26676 -39.41652 -36.09839 -34.45237 -33.90656 -30.00959 -28.69265 -26.89912 -25.90159 -24.03058 -22.53691 -21.30455 -20.70118 -19.44500 -19.32806 -18.76183 -18.49540 -17.62034 -17.00883 -16.68848 -16.46681 -15.78160 -15.48519 -15.25328 -15.08426 -14.99529 -14.74107 -14.73229 -14.68740 -14.30211 -14.21050 -13.71723 -13.62232 -13.53772 -13.05958 -12.60217 -12.50001 -12.40663 -12.25386 -11.84573 -11.59616 -11.52878 -11.43262 -11.25055 -10.75819 -10.53310 -10.09821 -8.19589 -6.29242 1.40459 1.41180 1.52750 1.64856 1.81068 2.14279 2.42630 2.77166 2.83663 3.01760 3.13588 3.44948 3.63569 3.74523 3.90791 4.01519 4.25504 4.30925 4.50390 4.61615 4.69501 4.77749 4.86627 4.90744 5.00497 5.02181 5.14010 5.22145 5.53307 5.58129 5.77954 5.88950 6.28982 6.56549 6.86719 7.29655 7.39546 8.91875 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.051670 B = 0.002507 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.767473 B =11163.912341 C =11316.038052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.131 4.131 12 C 0.521 3.479 13 O -0.581 6.581 14 N -0.702 5.702 15 C 0.117 3.883 16 C -0.119 4.119 17 C -0.157 4.157 18 C 0.459 3.541 19 F -0.187 7.187 20 F -0.187 7.187 21 F -0.192 7.192 22 C -0.141 4.141 23 H 0.264 0.736 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.419 0.581 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -26.132 -0.783 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.122 4.122 11 C -0.170 4.170 12 C 0.309 3.691 13 O -0.460 6.460 14 N -0.355 5.355 15 C 0.011 3.989 16 C -0.157 4.157 17 C -0.176 4.176 18 C 0.405 3.595 19 F -0.169 7.169 20 F -0.169 7.169 21 F -0.174 7.174 22 C -0.180 4.180 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.256 0.744 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.171 0.829 35 H 0.124 0.876 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.550 -25.908 -0.782 25.966 hybrid contribution -0.074 0.602 -0.235 0.651 sum 1.476 -25.306 -1.017 25.369 Atomic orbital electron populations 1.70057 1.07469 1.27773 1.51665 1.25891 0.95812 1.03019 0.94741 0.85522 0.78659 0.78808 0.78525 1.19757 1.20344 1.19284 1.21713 0.93351 0.92902 1.50607 0.93100 1.19022 0.94222 0.92354 0.95557 1.21166 0.97628 0.93125 1.00267 1.21684 0.97921 0.91510 1.05933 1.21049 0.89346 0.84779 0.73917 1.90678 1.19103 1.85412 1.50850 1.45577 1.10742 1.04044 1.75152 1.21749 0.94449 0.85956 0.96734 1.23328 1.02667 0.95469 0.94208 1.24167 1.04844 0.87408 1.01200 1.20663 0.73259 0.91564 0.74035 1.93183 1.76262 1.77786 1.69620 1.93153 1.34393 1.93572 1.95774 1.93178 1.89643 1.96154 1.38377 1.23549 0.98356 0.97270 0.98784 0.92671 0.98050 0.98001 0.94129 0.94163 0.87221 0.87152 0.74352 0.88890 0.87358 0.86953 0.82894 0.87577 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.33 4.97 29.85 0.15 1.47 16 10 C -0.08 -3.55 4.44 30.59 0.14 -3.42 16 11 C -0.13 -3.87 5.70 29.85 0.17 -3.70 16 12 C 0.52 14.66 7.83 87.66 0.69 15.35 16 13 O -0.58 -21.94 15.58 -3.03 -0.05 -21.99 16 14 N -0.70 -12.30 5.26 -439.77 -2.31 -14.61 16 15 C 0.12 1.84 4.33 45.58 0.20 2.03 16 16 C -0.12 -1.12 7.20 31.12 0.22 -0.90 16 17 C -0.16 -1.56 3.67 -10.27 -0.04 -1.60 16 18 C 0.46 6.26 3.01 71.98 0.22 6.47 16 19 F -0.19 -2.77 17.20 44.97 0.77 -2.00 16 20 F -0.19 -2.91 15.74 44.97 0.71 -2.20 16 21 F -0.19 -3.15 17.32 44.97 0.78 -2.37 16 22 C -0.14 -1.90 7.33 31.18 0.23 -1.67 16 23 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 27 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 28 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.42 4.40 8.70 -92.70 -0.81 3.59 16 31 H 0.09 1.91 7.47 -2.39 -0.02 1.89 16 32 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.11 0.98 7.83 -2.39 -0.02 0.96 16 34 H 0.15 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.11 1.42 7.18 -2.39 -0.02 1.40 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.01 318.72 5.17 -66.84 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 0.29 Total: 2.11 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 2.66 Total: -16.99 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -2.03 Total: -70.29 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 2.26 Total: -6.57 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -72.01 5.17 -66.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594360984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.906 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds