Wall clock time and date at job start Fri Apr 10 2020 14:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48502 * 109.46994 * 269.99765 * 3 2 1 5 5 H 1.48497 * 109.47060 * 29.99849 * 3 2 1 6 6 H 1.48502 * 109.47262 * 149.99807 * 3 2 1 7 7 C 1.37880 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00567 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99496 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47438 * 60.00010 * 9 7 2 11 11 N 1.46506 * 109.47091 * 179.97438 * 9 7 2 12 12 C 1.34773 * 120.00154 * 204.99816 * 11 9 7 13 13 O 1.21280 * 120.00148 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00085 * 180.02562 * 12 11 9 15 15 C 1.52998 * 109.47286 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46991 * 179.97438 * 15 14 12 17 17 C 1.53786 * 113.61503 * 85.86302 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 15 19 19 C 1.53781 * 113.61337 * 183.47096 * 16 15 14 20 20 C 1.53006 * 109.47348 * 299.99884 * 9 7 2 21 21 F 1.39902 * 109.46701 * 300.00037 * 20 9 7 22 22 F 1.39901 * 109.46693 * 60.00251 * 20 9 7 23 23 F 1.39901 * 109.47084 * 180.02562 * 20 9 7 24 24 H 0.97003 * 120.00474 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99321 * 25.00439 * 11 9 7 26 26 H 1.09000 * 109.46992 * 60.00177 * 14 12 11 27 27 H 1.09006 * 109.46974 * 300.00340 * 14 12 11 28 28 H 1.09000 * 109.47147 * 60.00043 * 15 14 12 29 29 H 1.08997 * 109.47118 * 299.99864 * 15 14 12 30 30 H 1.09002 * 112.85017 * 314.66684 * 16 15 14 31 31 H 1.08992 * 113.61675 * 254.61398 * 17 16 15 32 32 H 1.09000 * 113.60973 * 25.51686 * 17 16 15 33 33 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 34 34 H 1.09003 * 113.61268 * 89.11946 * 18 17 16 35 35 H 1.08999 * 113.61567 * 334.48261 * 19 16 15 36 36 H 1.09000 * 113.61379 * 105.30384 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2031 -3.6127 0.0005 12 6 1.8370 -4.8123 -0.4927 13 8 0.7196 -4.9699 -0.9370 14 6 2.8161 -5.9579 -0.4922 15 6 2.1541 -7.1949 -1.1024 16 6 3.1485 -8.3577 -1.1024 17 6 3.1669 -9.1525 0.2140 18 6 3.2939 -10.4222 -0.6490 19 6 2.6076 -9.6307 -1.7747 20 6 0.3709 -2.5799 1.2495 21 9 1.1749 -2.5056 2.3920 22 9 -0.5382 -1.5166 1.2488 23 9 -0.3281 -3.7918 1.2497 24 1 -0.4851 0.8400 -0.0004 25 1 3.0969 -3.4865 0.3556 26 1 3.1198 -6.1757 0.5318 27 1 3.6924 -5.6872 -1.0813 28 1 1.8507 -6.9767 -2.1264 29 1 1.2777 -7.4657 -0.5137 30 1 4.1395 -8.0672 -1.4510 31 1 4.0424 -8.9535 0.8320 32 1 2.2321 -9.0953 0.7716 33 1 2.7025 -11.2610 -0.2817 34 1 4.3248 -10.6962 -0.8736 35 1 1.5202 -9.7041 -1.7598 36 1 3.0309 -9.8166 -2.7618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928807279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:13 Heat of formation + Delta-G solvation = -192.897100 kcal Electronic energy + Delta-G solvation = -22647.311509 eV Core-core repulsion = 18716.327209 eV Total energy + Delta-G solvation = -3930.984301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.43021 -48.06540 -47.74210 -40.72521 -39.53190 -36.50789 -34.46322 -33.63256 -30.42475 -27.21255 -26.55384 -26.33928 -23.78296 -22.56914 -21.29906 -20.25239 -19.27767 -18.86802 -18.67149 -18.16950 -17.43007 -16.85756 -16.56003 -16.21995 -15.80221 -15.29932 -14.99448 -14.84589 -14.60039 -14.48184 -14.31808 -14.18932 -14.03988 -13.85164 -13.60391 -13.25244 -13.10303 -12.87192 -12.68871 -12.59942 -12.25361 -12.19457 -11.86028 -11.59318 -11.36554 -11.09406 -10.93348 -10.68680 -10.66529 -10.02878 -8.21695 -6.52810 1.46309 1.47385 1.59024 1.73125 2.25198 2.41799 2.54831 2.93677 3.69658 3.73276 3.80968 3.82709 3.88567 4.02369 4.04779 4.18614 4.34721 4.44189 4.70676 4.75319 4.89326 4.94908 4.96216 4.98159 5.08609 5.14732 5.23421 5.35566 5.45459 5.49027 5.56381 5.65280 5.73190 6.52554 6.77742 7.17146 7.42785 8.71094 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.004257 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.079062 B = 6575.391938 C = 6951.281814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.561 4.561 8 H 0.094 0.906 9 C 0.248 3.752 10 H 0.044 0.956 11 N -0.708 5.708 12 C 0.495 3.505 13 O -0.586 6.586 14 C -0.124 4.124 15 C -0.090 4.090 16 C -0.106 4.106 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.143 4.143 20 C 0.413 3.587 21 F -0.202 7.202 22 F -0.152 7.152 23 F -0.220 7.220 24 H 0.268 0.732 25 H 0.415 0.585 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 -13.204 -0.146 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.181 1.181 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.141 3.859 10 H 0.062 0.938 11 N -0.359 5.359 12 C 0.283 3.717 13 O -0.466 6.466 14 C -0.164 4.164 15 C -0.128 4.128 16 C -0.125 4.125 17 C -0.179 4.179 18 C -0.174 4.174 19 C -0.180 4.180 20 C 0.357 3.643 21 F -0.184 7.184 22 F -0.133 7.133 23 F -0.202 7.202 24 H 0.078 0.922 25 H 0.251 0.749 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.050 -13.205 -0.435 16.015 hybrid contribution -0.235 1.076 0.469 1.197 sum 8.814 -12.130 0.034 14.994 Atomic orbital electron populations 1.70538 1.07576 1.28128 1.44793 1.26036 0.95890 1.03824 0.93466 0.85150 0.78546 0.77005 0.78574 1.19524 1.21112 1.18092 1.21247 0.94565 0.88340 1.55615 0.88853 1.19302 0.89136 0.87952 0.89538 0.93846 1.46023 1.17066 1.10154 1.62699 1.21825 0.89108 0.84619 0.76112 1.90668 1.24085 1.83809 1.48020 1.21698 0.97861 0.91460 1.05339 1.21263 0.97762 0.93287 1.00450 1.22601 0.99322 0.92817 0.97716 1.23055 1.02168 0.96456 0.96212 1.22852 1.01426 0.96613 0.96536 1.22957 1.00249 0.96103 0.98711 1.23333 0.80853 0.72305 0.87812 1.92984 1.74125 1.96148 1.55171 1.93374 1.69041 1.54564 1.96324 1.93058 1.81666 1.48443 1.97027 0.92217 0.74872 0.86939 0.86129 0.92816 0.93353 0.87554 0.90459 0.91175 0.91455 0.89011 0.91165 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.03 9.50 21.45 0.20 -48.83 16 2 C 0.01 0.67 5.20 84.66 0.44 1.11 16 3 Si 0.98 40.45 29.54 68.60 2.03 42.47 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.56 -28.32 8.46 25.60 0.22 -28.11 16 8 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 9 C 0.25 12.54 2.21 44.25 0.10 12.64 16 10 H 0.04 2.55 7.58 -2.39 -0.02 2.53 16 11 N -0.71 -28.20 4.99 -446.08 -2.22 -30.43 16 12 C 0.49 18.89 7.36 87.66 0.65 19.53 16 13 O -0.59 -28.07 14.56 -3.03 -0.04 -28.11 16 14 C -0.12 -3.08 5.70 29.85 0.17 -2.91 16 15 C -0.09 -2.24 4.33 30.59 0.13 -2.11 16 16 C -0.11 -1.91 3.64 -10.26 -0.04 -1.94 16 17 C -0.14 -2.35 7.65 31.21 0.24 -2.11 16 18 C -0.14 -1.99 8.09 31.21 0.25 -1.74 16 19 C -0.14 -2.45 7.64 31.12 0.24 -2.21 16 20 C 0.41 21.68 2.81 71.98 0.20 21.88 16 21 F -0.20 -9.96 16.94 44.97 0.76 -9.19 16 22 F -0.15 -8.70 12.91 44.97 0.58 -8.12 16 23 F -0.22 -11.54 15.68 44.97 0.71 -10.83 16 24 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 25 H 0.41 13.51 8.54 -92.71 -0.79 12.72 16 26 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 29 H 0.05 1.41 7.83 -2.39 -0.02 1.39 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.33 7.92 -2.39 -0.02 1.31 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -65.49 309.63 4.91 -60.57 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.31 Total: 18.43 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 2.60 Total: 14.04 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.02 Total: -79.26 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.11 kcal Atomic # 9 Polarization: -30.19 SS G_CDS: 2.05 Total: -28.14 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -65.49 4.91 -60.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.323 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds