Wall clock time and date at job start Fri Apr 10 2020 14:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48497 * 109.46914 * 269.99775 * 3 2 1 5 5 H 1.48497 * 109.47147 * 29.99927 * 3 2 1 6 6 H 1.48502 * 109.47170 * 150.00063 * 3 2 1 7 7 C 1.37875 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47073 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47258 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00546 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99530 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00306 * 180.02562 * 13 12 11 16 16 C 1.52994 * 112.85110 * 48.79952 * 15 13 12 17 17 F 1.39894 * 109.47554 * 191.19753 * 16 15 13 18 18 F 1.39895 * 109.47319 * 311.20359 * 16 15 13 19 19 F 1.39904 * 109.46654 * 71.19949 * 16 15 13 20 20 C 1.53782 * 113.61498 * 180.02562 * 15 13 12 21 21 C 1.53781 * 87.08260 * 89.19810 * 20 15 13 22 22 C 1.53786 * 87.17350 * 25.39213 * 21 20 15 23 23 H 0.97000 * 119.99890 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47469 * 60.00048 * 9 7 2 25 25 H 1.09002 * 109.47074 * 299.99872 * 9 7 2 26 26 H 1.08998 * 109.47124 * 59.99460 * 10 9 7 27 27 H 1.09002 * 109.46641 * 299.99761 * 10 9 7 28 28 H 1.08998 * 109.47708 * 59.99669 * 11 10 9 29 29 H 1.09002 * 109.47253 * 299.99871 * 11 10 9 30 30 H 0.97001 * 119.99856 * 359.97438 * 12 11 10 31 31 H 1.09001 * 113.61250 * 334.64628 * 20 15 13 32 32 H 1.08997 * 113.61225 * 203.74469 * 20 15 13 33 33 H 1.09002 * 113.61445 * 139.98212 * 21 20 15 34 34 H 1.09002 * 113.61408 * 270.79943 * 21 20 15 35 35 H 1.08993 * 113.61491 * 89.15923 * 22 21 20 36 36 H 1.09000 * 113.61138 * 220.06261 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0019 14 8 0.7906 -7.5929 -0.0020 15 6 2.9623 -8.5168 -0.0020 16 6 4.0542 -8.3650 1.0589 17 9 5.0568 -9.3147 0.8355 18 9 4.6032 -7.0805 0.9826 19 9 3.5009 -8.5609 2.3288 20 6 2.2917 -9.9006 -0.0027 21 6 2.3070 -9.8203 -1.5383 22 6 3.5042 -8.8648 -1.4004 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8539 -5.0446 -0.8913 29 1 0.8533 -5.0451 0.8886 30 1 3.3859 -5.9234 -0.0021 31 1 1.2889 -9.9001 0.4246 32 1 2.9238 -10.6923 0.3994 33 1 2.5556 -10.7647 -2.0225 34 1 1.4189 -9.3494 -1.9598 35 1 4.4683 -9.3728 -1.3811 36 1 3.4787 -8.0293 -2.0999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126011986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:28 Heat of formation + Delta-G solvation = -184.771193 kcal Electronic energy + Delta-G solvation = -22416.970329 eV Core-core repulsion = 18486.338394 eV Total energy + Delta-G solvation = -3930.631935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -50.45155 -47.98984 -47.86795 -40.73993 -37.79009 -35.47509 -33.39221 -31.36724 -29.19275 -26.83697 -26.17541 -24.30214 -23.08202 -21.61919 -20.73874 -19.53142 -18.69111 -18.64689 -18.33823 -16.62676 -16.32756 -15.78481 -15.34566 -15.08275 -14.75630 -14.66279 -14.48464 -14.34440 -14.19881 -14.05275 -13.94318 -13.73106 -13.05123 -12.80075 -12.63847 -12.29273 -11.87125 -11.78338 -11.35971 -11.03259 -10.95931 -10.91602 -10.76747 -10.61720 -10.10155 -9.90415 -9.44339 -9.14348 -8.94094 -8.38530 -6.03188 -4.06301 2.06939 2.60509 2.92856 3.30303 3.35114 3.36793 3.39875 3.54759 3.70217 4.11573 4.27584 4.32378 4.43009 4.51023 4.93257 5.15925 5.25922 5.32776 5.45568 5.53509 5.63792 5.64581 5.70885 5.92428 6.09763 6.32467 6.54601 6.74773 6.95411 7.48797 7.61292 7.73227 7.95165 8.09875 8.36482 9.00183 9.58074 11.08123 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.003614 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.481963 B = 7745.763244 C = 8163.642303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.718 5.718 13 C 0.535 3.465 14 O -0.520 6.520 15 C -0.170 4.170 16 C 0.470 3.530 17 F -0.175 7.175 18 F -0.176 7.176 19 F -0.174 7.174 20 C -0.107 4.107 21 C -0.132 4.132 22 C -0.116 4.116 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.403 0.597 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 -21.461 -1.363 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.371 5.371 13 C 0.318 3.682 14 O -0.396 6.396 15 C -0.175 4.175 16 C 0.415 3.585 17 F -0.156 7.156 18 F -0.157 7.157 19 F -0.155 7.155 20 C -0.145 4.145 21 C -0.169 4.169 22 C -0.154 4.154 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.241 0.759 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.877 -21.454 -1.327 22.893 hybrid contribution 1.183 1.205 0.316 1.718 sum 9.059 -20.249 -1.010 22.206 Atomic orbital electron populations 1.69964 1.06068 1.26714 1.50545 1.25022 0.94853 0.99306 0.95229 0.86576 0.79825 0.83393 0.78103 1.20648 1.21192 1.19867 1.21197 0.93021 0.90902 1.50987 0.92614 1.19032 0.93804 0.90800 0.97696 1.21908 0.99838 0.93132 1.01096 1.21751 0.91774 0.84888 1.02306 1.46509 1.12005 1.05445 1.73160 1.19096 0.88320 0.83074 0.77746 1.90726 1.15422 1.84253 1.49164 1.23734 0.95864 1.00482 0.97453 1.20059 0.82393 0.73715 0.82326 1.93166 1.63184 1.64772 1.94514 1.93076 1.87016 1.39484 1.96157 1.93226 1.85145 1.94732 1.42402 1.22873 1.02636 0.90763 0.98212 1.22802 0.98373 1.00100 0.95652 1.23075 1.00177 1.01007 0.91128 0.92912 0.96225 0.96215 0.92563 0.92615 0.91362 0.91392 0.75861 0.88302 0.88379 0.89894 0.88766 0.87543 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.11 2.01 5.67 -4.05 -0.02 1.99 16 12 N -0.72 -10.57 5.25 -60.30 -0.32 -10.88 16 13 C 0.54 7.72 6.65 -10.99 -0.07 7.65 16 14 O -0.52 -9.09 15.76 5.55 0.09 -9.00 16 15 C -0.17 -1.83 0.88 -154.76 -0.14 -1.96 16 16 C 0.47 5.16 2.66 37.15 0.10 5.26 16 17 F -0.18 -1.70 15.76 2.25 0.04 -1.66 16 18 F -0.18 -2.05 14.41 2.25 0.03 -2.01 16 19 F -0.17 -2.15 17.17 2.25 0.04 -2.12 16 20 C -0.11 -0.97 6.81 -25.92 -0.18 -1.15 16 21 C -0.13 -1.05 7.73 -25.92 -0.20 -1.25 16 22 C -0.12 -0.94 7.11 -25.82 -0.18 -1.12 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.40 5.28 5.94 -40.82 -0.24 5.03 16 31 H 0.10 1.03 7.43 -51.93 -0.39 0.65 16 32 H 0.10 0.70 7.88 -51.93 -0.41 0.29 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.11 0.69 7.14 -51.93 -0.37 0.31 16 36 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -31.03 312.44 -5.83 -36.86 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.75 Total: -0.33 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.38 Total: -6.00 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.42 Total: -36.88 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.03 -5.83 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126011986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.912 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds