Wall clock time and date at job start Fri Apr 10 2020 14:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48497 * 109.46914 * 269.99775 * 3 2 1 5 5 H 1.48497 * 109.47147 * 29.99927 * 3 2 1 6 6 H 1.48502 * 109.47170 * 150.00063 * 3 2 1 7 7 C 1.37875 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47073 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47258 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00546 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99530 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00306 * 180.02562 * 13 12 11 16 16 C 1.52994 * 112.85110 * 48.79952 * 15 13 12 17 17 F 1.39894 * 109.47554 * 191.19753 * 16 15 13 18 18 F 1.39895 * 109.47319 * 311.20359 * 16 15 13 19 19 F 1.39904 * 109.46654 * 71.19949 * 16 15 13 20 20 C 1.53782 * 113.61498 * 180.02562 * 15 13 12 21 21 C 1.53781 * 87.08260 * 89.19810 * 20 15 13 22 22 C 1.53786 * 87.17350 * 25.39213 * 21 20 15 23 23 H 0.97000 * 119.99890 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47469 * 60.00048 * 9 7 2 25 25 H 1.09002 * 109.47074 * 299.99872 * 9 7 2 26 26 H 1.08998 * 109.47124 * 59.99460 * 10 9 7 27 27 H 1.09002 * 109.46641 * 299.99761 * 10 9 7 28 28 H 1.08998 * 109.47708 * 59.99669 * 11 10 9 29 29 H 1.09002 * 109.47253 * 299.99871 * 11 10 9 30 30 H 0.97001 * 119.99856 * 359.97438 * 12 11 10 31 31 H 1.09001 * 113.61250 * 334.64628 * 20 15 13 32 32 H 1.08997 * 113.61225 * 203.74469 * 20 15 13 33 33 H 1.09002 * 113.61445 * 139.98212 * 21 20 15 34 34 H 1.09002 * 113.61408 * 270.79943 * 21 20 15 35 35 H 1.08993 * 113.61491 * 89.15923 * 22 21 20 36 36 H 1.09000 * 113.61138 * 220.06261 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0019 14 8 0.7906 -7.5929 -0.0020 15 6 2.9623 -8.5168 -0.0020 16 6 4.0542 -8.3650 1.0589 17 9 5.0568 -9.3147 0.8355 18 9 4.6032 -7.0805 0.9826 19 9 3.5009 -8.5609 2.3288 20 6 2.2917 -9.9006 -0.0027 21 6 2.3070 -9.8203 -1.5383 22 6 3.5042 -8.8648 -1.4004 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8539 -5.0446 -0.8913 29 1 0.8533 -5.0451 0.8886 30 1 3.3859 -5.9234 -0.0021 31 1 1.2889 -9.9001 0.4246 32 1 2.9238 -10.6923 0.3994 33 1 2.5556 -10.7647 -2.0225 34 1 1.4189 -9.3494 -1.9598 35 1 4.4683 -9.3728 -1.3811 36 1 3.4787 -8.0293 -2.0999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126011986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:27 Heat of formation + Delta-G solvation = -203.719381 kcal Electronic energy + Delta-G solvation = -22417.791985 eV Core-core repulsion = 18486.338394 eV Total energy + Delta-G solvation = -3931.453590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.32350 -48.85367 -48.75515 -41.75173 -38.79625 -36.97842 -35.27124 -33.15306 -30.20472 -28.50456 -26.89288 -25.64709 -24.41651 -22.72503 -22.38229 -20.56164 -19.58971 -19.53531 -19.28127 -18.55571 -17.35291 -17.13114 -16.70232 -16.45540 -16.04750 -15.68713 -15.55238 -15.35816 -15.19041 -15.08563 -14.92447 -14.73175 -14.31429 -13.95516 -13.80852 -13.65005 -13.43752 -13.30293 -12.76117 -12.58352 -12.40754 -12.08934 -11.76624 -11.72042 -11.66447 -11.62661 -11.27791 -11.00999 -10.56023 -10.27315 -8.20314 -6.31746 1.04306 1.41564 1.42804 1.53809 1.64241 1.82312 2.41672 2.50483 2.67515 2.85011 3.13635 3.30758 3.43809 3.53899 3.66391 4.08204 4.15244 4.25140 4.49855 4.56256 4.63994 4.78878 4.86667 4.88976 4.91636 5.01057 5.12464 5.27802 5.28799 5.49733 5.68023 5.82572 6.20530 6.30357 6.85132 6.93438 7.37918 8.91773 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.003614 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.481963 B = 7745.763244 C = 8163.642303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.128 3.872 12 N -0.713 5.713 13 C 0.533 3.467 14 O -0.555 6.555 15 C -0.175 4.175 16 C 0.472 3.528 17 F -0.163 7.163 18 F -0.181 7.181 19 F -0.184 7.184 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.106 4.106 23 H 0.263 0.737 24 H -0.004 1.004 25 H -0.007 1.007 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.413 0.587 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.230 -22.325 -1.883 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.142 4.142 11 C 0.004 3.996 12 N -0.367 5.367 13 C 0.318 3.682 14 O -0.433 6.433 15 C -0.179 4.179 16 C 0.418 3.582 17 F -0.144 7.144 18 F -0.162 7.162 19 F -0.166 7.166 20 C -0.143 4.143 21 C -0.164 4.164 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.253 0.747 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.275 -22.336 -1.849 24.656 hybrid contribution 0.417 1.430 0.493 1.569 sum 10.692 -20.906 -1.356 23.521 Atomic orbital electron populations 1.70105 1.07898 1.27819 1.51613 1.25996 0.95736 1.03470 0.94709 0.85423 0.78655 0.78322 0.78503 1.19710 1.20997 1.18579 1.21667 0.93711 0.92044 1.50610 0.91686 1.18936 0.94355 0.92750 0.95265 1.21618 0.98564 0.91923 1.02075 1.21351 0.91785 0.85109 1.01338 1.46353 1.11992 1.05102 1.73288 1.19676 0.88597 0.83554 0.76370 1.90712 1.17269 1.84819 1.50506 1.23751 0.95387 0.99478 0.99323 1.20051 0.82602 0.73735 0.81859 1.93189 1.62585 1.64222 1.94390 1.93063 1.87074 1.39934 1.96130 1.93209 1.85376 1.94782 1.43208 1.22985 1.01941 0.90232 0.99192 1.22769 0.97561 1.01290 0.94826 1.23191 1.01265 1.01111 0.88789 0.92776 0.98568 0.98876 0.91799 0.91222 0.92115 0.92817 0.74681 0.90217 0.85845 0.86983 0.90789 0.84976 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -4.07 5.27 30.59 0.16 -3.90 16 11 C 0.13 4.53 5.67 86.38 0.49 5.02 16 12 N -0.71 -20.62 5.25 -463.08 -2.43 -23.05 16 13 C 0.53 15.19 6.65 87.66 0.58 15.77 16 14 O -0.55 -19.75 15.76 -3.04 -0.05 -19.80 16 15 C -0.17 -3.45 0.88 -52.34 -0.05 -3.50 16 16 C 0.47 9.43 2.66 71.98 0.19 9.62 16 17 F -0.16 -2.67 15.76 44.97 0.71 -1.96 16 18 F -0.18 -3.87 14.41 44.97 0.65 -3.22 16 19 F -0.18 -4.34 17.17 44.97 0.77 -3.57 16 20 C -0.11 -1.72 6.81 31.12 0.21 -1.51 16 21 C -0.13 -1.73 7.73 31.12 0.24 -1.49 16 22 C -0.11 -1.42 7.11 31.18 0.22 -1.20 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.41 10.26 5.94 -92.71 -0.55 9.71 16 31 H 0.08 1.63 7.43 -2.39 -0.02 1.62 16 32 H 0.12 1.38 7.88 -2.39 -0.02 1.36 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.13 1.14 7.14 -2.39 -0.02 1.13 16 36 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -67.59 312.44 5.41 -62.19 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.55 Total: 9.70 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 2.90 Total: -9.49 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.15 Total: -79.69 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.80 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 2.13 Total: -8.75 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -67.59 5.41 -62.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126011986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.532 kcal (2) G-P(sol) polarization free energy of solvation -67.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds