Wall clock time and date at job start Fri Apr 10 2020 14:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47061 * 299.99736 * 3 2 1 6 6 H 1.48500 * 109.47076 * 60.00346 * 3 2 1 7 7 C 1.37880 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47670 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47262 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99833 * 180.02562 * 12 11 10 14 14 H 1.09000 * 110.72922 * 31.59784 * 13 12 11 15 15 C 1.54348 * 110.99445 * 268.06842 * 13 12 11 16 16 C 1.51374 * 105.16804 * 215.35717 * 15 13 12 17 17 C 1.38508 * 130.38462 * 197.18161 * 16 15 13 18 18 C 1.38528 * 120.12780 * 180.20234 * 17 16 15 19 19 C 1.38223 * 119.99989 * 359.80248 * 18 17 16 20 20 C 1.38228 * 119.92086 * 0.12862 * 19 18 17 21 21 Cl 1.73596 * 119.90848 * 179.97438 * 20 19 18 22 22 C 1.38364 * 109.78774 * 17.26321 * 16 15 13 23 23 C 1.51370 * 109.67127 * 359.87587 * 22 16 15 24 24 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47471 * 59.99608 * 9 7 2 26 26 H 1.09000 * 109.47127 * 299.99608 * 9 7 2 27 27 H 1.09005 * 109.46863 * 59.99704 * 10 9 7 28 28 H 1.09000 * 109.46933 * 299.99967 * 10 9 7 29 29 H 1.09006 * 109.46449 * 59.99826 * 11 10 9 30 30 H 1.09000 * 109.46842 * 300.00533 * 11 10 9 31 31 H 1.00899 * 111.00162 * 56.05469 * 12 11 10 32 32 H 1.08998 * 110.29840 * 334.27390 * 15 13 12 33 33 H 1.08993 * 110.30324 * 96.33756 * 15 13 12 34 34 H 1.08000 * 119.88008 * 359.97438 * 17 16 15 35 35 H 1.08005 * 119.97369 * 179.97438 * 18 17 16 36 36 H 1.08007 * 120.04498 * 180.10170 * 19 18 17 37 37 H 1.09002 * 110.30562 * 223.95409 * 23 22 16 38 38 H 1.08997 * 110.30096 * 101.89855 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0005 14 1 0.7873 -7.3201 -0.5332 15 6 1.5143 -7.9046 1.4407 16 6 1.6574 -9.4091 1.3547 17 6 1.2618 -10.4001 2.2378 18 6 1.5067 -11.7315 1.9440 19 6 2.1433 -12.0734 0.7657 20 6 2.5373 -11.0853 -0.1170 21 17 3.3375 -11.5150 -1.5964 22 6 2.2962 -9.7523 0.1763 23 6 2.6223 -8.5005 -0.6098 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 0.8534 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.0703 -6.0366 0.7815 32 1 2.2700 -7.4904 2.1081 33 1 0.5163 -7.6373 1.7879 34 1 0.7647 -10.1330 3.1587 35 1 1.1975 -12.5022 2.6345 36 1 2.3332 -13.1114 0.5351 37 1 2.3801 -8.6415 -1.6632 38 1 3.6759 -8.2458 -0.4953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168694180.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:08 Heat of formation + Delta-G solvation = -4.643859 kcal Electronic energy + Delta-G solvation = -18291.411520 eV Core-core repulsion = 15351.156397 eV Total energy + Delta-G solvation = -2940.255123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46222 -37.38299 -36.55217 -34.73330 -32.97505 -31.41442 -30.92571 -28.14331 -27.51444 -25.69244 -22.75301 -22.11248 -21.39922 -20.94171 -19.94678 -16.83987 -16.50646 -16.10311 -15.60634 -15.40661 -14.95150 -14.44220 -14.03722 -13.86335 -13.69951 -13.22703 -13.04117 -12.63856 -12.31805 -12.12641 -11.86569 -11.71764 -11.45437 -11.36268 -11.29055 -11.14077 -10.99418 -10.85367 -10.58741 -10.46193 -9.71002 -9.34153 -9.04093 -8.91422 -8.83362 -8.34188 -8.22819 -5.99165 -4.01103 0.88259 0.97104 1.93015 3.30819 3.31849 3.39270 3.43809 4.03077 4.20432 4.46133 4.52443 4.67322 4.80321 4.88893 5.04197 5.10540 5.19739 5.36857 5.46693 5.56284 5.62433 5.63554 5.79119 5.84901 5.91306 5.93972 5.99233 6.06382 6.25112 6.30241 6.51700 6.71240 6.76043 7.13232 7.29790 7.56991 7.69387 7.83851 8.01420 8.44680 9.06448 9.63017 11.12346 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037810 B = 0.002604 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.376797 B =10748.951296 C =11247.383777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.058 3.942 12 N -0.680 5.680 13 C 0.091 3.909 14 H 0.090 0.910 15 C -0.113 4.113 16 C -0.078 4.078 17 C -0.105 4.105 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.023 4.023 21 Cl -0.073 7.073 22 C -0.083 4.083 23 C -0.072 4.072 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.340 0.660 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -25.588 2.917 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.309 5.309 13 C -0.021 4.021 14 H 0.109 0.891 15 C -0.152 4.152 16 C -0.079 4.079 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.049 4.049 21 Cl -0.045 7.045 22 C -0.085 4.085 23 C -0.110 4.110 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.251 -25.464 2.082 25.755 hybrid contribution 0.100 0.739 0.883 1.156 sum 3.352 -24.725 2.964 25.126 Atomic orbital electron populations 1.69975 1.06064 1.26449 1.51144 1.25035 0.94850 0.99287 0.95400 0.86543 0.80154 0.83809 0.77549 1.19717 1.21009 1.21065 1.21299 0.93102 0.91050 1.50180 0.92612 1.19068 0.94013 0.91390 0.97119 1.21632 0.99209 0.92954 1.00776 1.22182 0.94111 0.90647 1.00050 1.60562 1.19814 1.00708 1.49864 1.22244 0.97018 0.89489 0.93306 0.89134 1.21936 1.03154 0.90400 0.99671 1.20585 0.97518 0.95848 0.93961 1.20883 0.99993 0.92035 0.99379 1.21072 0.99108 0.96143 0.96623 1.20941 0.99717 0.98750 0.93940 1.20521 1.01518 0.93025 0.89876 1.98369 1.78497 1.93393 1.34197 1.20547 0.98211 0.92902 0.96794 1.21096 1.01465 0.89239 0.99164 0.93096 0.96567 0.96813 0.93645 0.92490 0.91336 0.95542 0.84074 0.89624 0.90230 0.85580 0.85013 0.84925 0.90037 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.19 5.41 -26.73 -0.14 -2.34 16 11 C 0.06 0.97 5.55 -3.83 -0.02 0.94 16 12 N -0.68 -9.32 6.35 -105.24 -0.67 -9.99 16 13 C 0.09 1.06 3.40 -66.30 -0.23 0.83 16 14 H 0.09 1.10 7.83 -51.93 -0.41 0.69 16 15 C -0.11 -1.17 6.46 -26.85 -0.17 -1.34 16 16 C -0.08 -0.81 6.14 -104.15 -0.64 -1.45 16 17 C -0.10 -0.93 10.06 -39.37 -0.40 -1.33 16 18 C -0.11 -0.89 10.06 -39.48 -0.40 -1.29 16 19 C -0.11 -1.01 9.82 -39.59 -0.39 -1.40 16 20 C -0.02 -0.24 6.32 -39.45 -0.25 -0.49 16 21 Cl -0.07 -0.74 28.71 -51.86 -1.49 -2.23 16 22 C -0.08 -0.91 6.06 -104.11 -0.63 -1.54 16 23 C -0.07 -0.80 6.19 -26.85 -0.17 -0.97 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.34 4.34 8.10 -39.29 -0.32 4.03 16 32 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -30.18 331.11 -11.16 -41.34 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.73 Total: -0.98 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -3.98 Total: -23.52 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.07 Total: -36.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.49 Total: -2.23 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.18 -11.16 -41.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168694180.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.697 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds