Wall clock time and date at job start Fri Apr 10 2020 14:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47061 * 299.99736 * 3 2 1 6 6 H 1.48500 * 109.47076 * 60.00346 * 3 2 1 7 7 C 1.37880 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47670 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47262 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99833 * 180.02562 * 12 11 10 14 14 H 1.09000 * 110.72922 * 31.59784 * 13 12 11 15 15 C 1.54348 * 110.99445 * 268.06842 * 13 12 11 16 16 C 1.51374 * 105.16804 * 215.35717 * 15 13 12 17 17 C 1.38508 * 130.38462 * 197.18161 * 16 15 13 18 18 C 1.38528 * 120.12780 * 180.20234 * 17 16 15 19 19 C 1.38223 * 119.99989 * 359.80248 * 18 17 16 20 20 C 1.38228 * 119.92086 * 0.12862 * 19 18 17 21 21 Cl 1.73596 * 119.90848 * 179.97438 * 20 19 18 22 22 C 1.38364 * 109.78774 * 17.26321 * 16 15 13 23 23 C 1.51370 * 109.67127 * 359.87587 * 22 16 15 24 24 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47471 * 59.99608 * 9 7 2 26 26 H 1.09000 * 109.47127 * 299.99608 * 9 7 2 27 27 H 1.09005 * 109.46863 * 59.99704 * 10 9 7 28 28 H 1.09000 * 109.46933 * 299.99967 * 10 9 7 29 29 H 1.09006 * 109.46449 * 59.99826 * 11 10 9 30 30 H 1.09000 * 109.46842 * 300.00533 * 11 10 9 31 31 H 1.00899 * 111.00162 * 56.05469 * 12 11 10 32 32 H 1.08998 * 110.29840 * 334.27390 * 15 13 12 33 33 H 1.08993 * 110.30324 * 96.33756 * 15 13 12 34 34 H 1.08000 * 119.88008 * 359.97438 * 17 16 15 35 35 H 1.08005 * 119.97369 * 179.97438 * 18 17 16 36 36 H 1.08007 * 120.04498 * 180.10170 * 19 18 17 37 37 H 1.09002 * 110.30562 * 223.95409 * 23 22 16 38 38 H 1.08997 * 110.30096 * 101.89855 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0005 14 1 0.7873 -7.3201 -0.5332 15 6 1.5143 -7.9046 1.4407 16 6 1.6574 -9.4091 1.3547 17 6 1.2618 -10.4001 2.2378 18 6 1.5067 -11.7315 1.9440 19 6 2.1433 -12.0734 0.7657 20 6 2.5373 -11.0853 -0.1170 21 17 3.3375 -11.5150 -1.5964 22 6 2.2962 -9.7523 0.1763 23 6 2.6223 -8.5005 -0.6098 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 0.8534 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.0703 -6.0366 0.7815 32 1 2.2700 -7.4904 2.1081 33 1 0.5163 -7.6373 1.7879 34 1 0.7647 -10.1330 3.1587 35 1 1.1975 -12.5022 2.6345 36 1 2.3332 -13.1114 0.5351 37 1 2.3801 -8.6415 -1.6632 38 1 3.6759 -8.2458 -0.4953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168694180.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:07 Heat of formation + Delta-G solvation = -20.594836 kcal Electronic energy + Delta-G solvation = -18292.103206 eV Core-core repulsion = 15351.156397 eV Total energy + Delta-G solvation = -2940.946809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.23722 -38.35945 -37.36904 -36.19462 -34.70515 -32.55399 -32.13763 -29.34939 -28.30174 -27.34857 -24.36058 -23.05738 -22.17499 -22.10025 -21.38814 -18.50496 -17.54468 -17.19841 -16.65004 -16.43898 -16.18479 -16.08363 -15.29324 -14.77544 -14.57775 -14.33955 -14.06697 -13.91905 -13.75113 -13.53289 -13.17238 -12.83981 -12.64049 -12.55587 -12.45863 -12.43912 -12.14396 -12.08344 -11.95611 -11.74691 -11.52065 -11.36190 -11.06588 -10.55102 -9.62820 -9.57559 -9.36209 -8.19794 -6.30432 0.17211 0.26557 1.18544 1.40438 1.40855 1.54329 2.41474 2.60888 3.05145 3.13538 3.39578 3.64793 3.92183 4.04098 4.14591 4.15566 4.31247 4.39902 4.42918 4.49673 4.69740 4.72451 4.74872 4.83198 4.89289 4.93621 5.05490 5.12078 5.17194 5.23791 5.26909 5.38619 5.51942 5.54001 5.77190 5.84787 5.87547 6.07077 6.28271 6.47841 6.87085 7.38880 8.92333 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037810 B = 0.002604 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.376797 B =10748.951296 C =11247.383777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.073 3.927 12 N -0.680 5.680 13 C 0.090 3.910 14 H 0.084 0.916 15 C -0.106 4.106 16 C -0.091 4.091 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.037 4.037 21 Cl -0.078 7.078 22 C -0.101 4.101 23 C -0.066 4.066 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.348 0.652 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.076 0.924 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -26.612 3.918 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.056 4.056 12 N -0.310 5.310 13 C -0.020 4.020 14 H 0.103 0.897 15 C -0.145 4.145 16 C -0.092 4.092 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.064 4.064 21 Cl -0.049 7.049 22 C -0.102 4.102 23 C -0.103 4.103 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.167 0.833 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.163 0.837 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.094 0.906 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.992 -26.509 3.084 26.985 hybrid contribution -0.155 0.980 0.584 1.152 sum 3.837 -25.529 3.668 26.075 Atomic orbital electron populations 1.70100 1.07777 1.27686 1.51896 1.25988 0.95786 1.03383 0.94798 0.85401 0.79086 0.78788 0.77796 1.18623 1.20404 1.20287 1.21743 0.93547 0.92462 1.50217 0.92278 1.18974 0.94440 0.93079 0.94793 1.21382 0.98030 0.92948 1.00779 1.21857 0.93933 0.89896 0.99895 1.60454 1.19403 1.00692 1.50481 1.22212 0.96704 0.88527 0.94571 0.89740 1.21823 1.03453 0.90780 0.98454 1.20661 0.98228 0.95930 0.94344 1.21189 0.99558 0.92159 0.99733 1.21458 0.97764 0.96525 0.96564 1.21259 0.99131 0.99369 0.93822 1.20718 1.02153 0.93277 0.90227 1.98363 1.78644 1.93358 1.34580 1.20547 0.99379 0.92998 0.97260 1.20967 1.00987 0.89433 0.98933 0.92783 0.99101 0.98913 0.92946 0.93009 0.92051 0.95260 0.83255 0.89205 0.89931 0.83689 0.81944 0.83073 0.90579 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.82 5.41 30.59 0.17 -3.65 16 11 C 0.07 2.42 5.55 86.30 0.48 2.90 16 12 N -0.68 -18.27 6.35 -486.86 -3.09 -21.36 16 13 C 0.09 2.08 3.40 45.83 0.16 2.23 16 14 H 0.08 2.05 7.83 -2.39 -0.02 2.03 16 15 C -0.11 -2.09 6.46 30.52 0.20 -1.90 16 16 C -0.09 -1.76 6.14 -19.56 -0.12 -1.88 16 17 C -0.11 -1.67 10.06 22.40 0.23 -1.44 16 18 C -0.11 -1.36 10.06 22.34 0.22 -1.14 16 19 C -0.12 -1.80 9.82 22.26 0.22 -1.58 16 20 C -0.04 -0.73 6.32 22.36 0.14 -0.59 16 21 Cl -0.08 -1.53 28.71 -2.72 -0.08 -1.61 16 22 C -0.10 -2.12 6.06 -19.53 -0.12 -2.24 16 23 C -0.07 -1.44 6.19 30.52 0.19 -1.25 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.12 8.08 -2.38 -0.02 2.10 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.35 8.52 8.10 -89.69 -0.73 7.80 16 32 H 0.09 1.68 7.58 -2.39 -0.02 1.66 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 Total: -1.00 -64.73 331.11 2.06 -62.66 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.32 Total: 10.33 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 2.60 Total: -39.68 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -2.81 Total: -78.31 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -64.73 2.06 -62.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168694180.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.067 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds