Wall clock time and date at job start Fri Apr 10 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43205 * 119.99669 * 258.06647 * 3 2 1 5 5 N 3.51039 * 140.68849 * 258.06977 * 2 1 3 6 6 C 1.41156 * 119.99885 * 78.06215 * 3 2 1 7 7 C 1.39000 * 120.00165 * 354.89980 * 6 3 2 8 8 H 1.07999 * 119.99593 * 331.09977 * 7 6 3 9 9 C 1.40827 * 120.00038 * 151.11007 * 7 6 3 10 10 N 1.30336 * 120.00059 * 168.21007 * 9 7 6 11 11 Si 1.86803 * 120.00240 * 348.20163 * 9 7 6 12 12 H 1.48494 * 109.46987 * 89.18193 * 11 9 7 13 13 H 1.48497 * 109.47310 * 209.18630 * 11 9 7 14 14 H 1.48499 * 109.46891 * 329.18770 * 11 9 7 15 15 N 1.38300 * 120.00022 * 174.89415 * 6 3 2 16 16 C 1.39734 * 119.99942 * 120.18839 * 15 6 3 17 17 C 1.38938 * 120.11537 * 353.35719 * 16 15 6 18 18 C 1.37957 * 119.85731 * 180.02562 * 17 16 15 19 19 C 1.38575 * 120.31475 * 359.97438 * 18 17 16 20 20 C 1.38286 * 119.97387 * 0.02649 * 19 18 17 21 21 C 1.38369 * 119.92595 * 359.97438 * 20 19 18 22 22 C 1.51382 * 109.75167 * 180.02562 * 20 19 18 23 23 C 1.54337 * 105.17289 * 342.79636 * 22 20 19 24 24 C 1.51707 * 130.21403 * 179.85700 * 19 18 17 25 25 H 0.97006 * 120.00018 * 179.97438 * 10 9 7 26 26 H 0.97003 * 119.99908 * 300.19455 * 15 6 3 27 27 H 1.07997 * 120.06894 * 0.04600 * 17 16 15 28 28 H 1.07992 * 119.83885 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.92478 * 179.97438 * 21 20 19 30 30 H 1.08999 * 110.30040 * 223.87655 * 22 20 19 31 31 H 1.09000 * 110.38808 * 101.76703 * 22 20 19 32 32 H 1.09001 * 110.82198 * 144.60295 * 23 22 20 33 33 H 1.09002 * 110.82309 * 267.95503 * 23 22 20 34 34 H 1.09002 * 110.25363 * 78.28012 * 24 19 18 35 35 H 1.09001 * 110.49628 * 316.03055 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.2574 1.2134 5 7 3.8520 0.4597 2.1759 6 6 3.2738 -0.2519 -1.1960 7 6 2.5831 -0.6054 -2.3493 8 1 1.6421 -1.1302 -2.2756 9 6 3.1106 -0.2796 -3.6138 10 7 2.5937 -0.8024 -4.6899 11 14 4.5509 0.9023 -3.7487 12 1 5.8240 0.1420 -3.6699 13 1 4.4824 1.6200 -5.0469 14 1 4.4913 1.8843 -2.6364 15 7 4.6527 -0.1475 -1.2204 16 6 5.4314 -1.2567 -1.5609 17 6 4.8349 -2.4986 -1.7405 18 6 5.6089 -3.5902 -2.0760 19 6 6.9787 -3.4539 -2.2354 20 6 7.5755 -2.2193 -2.0573 21 6 6.8035 -1.1214 -1.7207 22 6 9.0674 -2.3344 -2.2869 23 6 9.3753 -3.8438 -2.1932 24 6 8.0306 -4.4867 -2.5937 25 1 2.9568 -0.5777 -5.5610 26 1 5.0792 0.6957 -1.0011 27 1 3.7676 -2.6090 -1.6180 28 1 5.1450 -4.5554 -2.2152 29 1 7.2697 -0.1573 -1.5812 30 1 9.6119 -1.7888 -1.5162 31 1 9.3299 -1.9554 -3.2747 32 1 10.1622 -4.1230 -2.8940 33 1 9.6492 -4.1209 -1.1752 34 1 8.0121 -4.6882 -3.6648 35 1 7.8691 -5.4068 -2.0320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:42 Heat of formation + Delta-G solvation = 76.141211 kcal Electronic energy + Delta-G solvation = -20542.677265 eV Core-core repulsion = 17504.817752 eV Total energy + Delta-G solvation = -3037.859513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.98695 -38.00881 -35.71453 -34.81078 -34.55652 -33.57341 -31.41206 -30.05217 -27.85589 -27.31270 -26.50456 -22.46431 -21.85239 -20.61855 -20.23288 -18.76318 -17.44029 -16.98113 -16.20562 -15.93931 -15.44219 -14.93368 -14.48674 -13.38453 -13.25107 -13.22909 -12.96879 -12.77825 -12.75442 -12.67089 -12.42997 -11.88537 -11.81664 -11.77077 -11.60069 -11.48922 -11.16411 -11.13915 -11.07643 -10.94525 -10.76817 -10.55252 -10.40669 -10.05023 -9.39603 -8.35006 -8.21296 -7.75488 -6.90551 -5.46368 1.75640 1.82256 2.15281 2.74333 2.83715 2.89294 3.44911 3.69195 3.83189 4.00867 4.14794 4.28269 4.31949 4.66127 4.73510 5.02674 5.09260 5.32118 5.38201 5.45959 5.47249 5.74467 5.77112 5.82691 5.84796 5.86090 6.08382 6.13357 6.18145 6.27277 6.37602 6.46110 6.78293 6.81889 7.02297 7.07249 7.20733 7.40567 7.52305 7.75079 8.04387 8.24799 8.88046 9.08713 9.18935 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.006576 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.403425 B = 4256.882653 C = 4909.080061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.323 3.677 3 C -0.296 4.296 4 C 0.309 3.691 5 N -0.530 5.530 6 C 0.343 3.657 7 C -0.360 4.360 8 H 0.121 0.879 9 C 0.080 3.920 10 N -0.730 5.730 11 Si 0.919 3.081 12 H -0.240 1.240 13 H -0.288 1.288 14 H -0.254 1.254 15 N -0.693 5.693 16 C 0.214 3.786 17 C -0.155 4.155 18 C -0.069 4.069 19 C -0.154 4.154 20 C -0.067 4.067 21 C -0.172 4.172 22 C -0.079 4.079 23 C -0.120 4.120 24 C -0.072 4.072 25 H 0.304 0.696 26 H 0.401 0.599 27 H 0.141 0.859 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.505 -4.446 -5.449 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C 0.014 3.986 3 C -0.314 4.314 4 C 0.002 3.998 5 N -0.213 5.213 6 C 0.240 3.760 7 C -0.387 4.387 8 H 0.138 0.862 9 C -0.152 4.152 10 N -0.348 5.348 11 Si 0.744 3.256 12 H -0.164 1.164 13 H -0.216 1.216 14 H -0.178 1.178 15 N -0.320 5.320 16 C 0.114 3.886 17 C -0.176 4.176 18 C -0.088 4.088 19 C -0.156 4.156 20 C -0.068 4.068 21 C -0.195 4.195 22 C -0.116 4.116 23 C -0.157 4.157 24 C -0.109 4.109 25 H 0.116 0.884 26 H 0.238 0.762 27 H 0.159 0.841 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.420 -4.281 -4.254 13.809 hybrid contribution 0.727 0.794 -0.593 1.230 sum 13.147 -3.486 -4.847 14.440 Atomic orbital electron populations 1.81063 1.12213 1.18435 1.08998 1.24642 0.91280 0.90596 0.92060 1.12917 0.83090 1.46801 0.88627 1.25185 0.92424 0.90486 0.91750 1.81064 1.09851 1.19143 1.11194 1.16814 0.79882 0.88301 0.90970 1.20065 1.05773 1.24302 0.88552 0.86158 1.26667 0.97956 0.95758 0.94789 1.69391 1.34667 1.29944 1.00757 0.86101 0.80900 0.80181 0.78457 1.16389 1.21566 1.17764 1.42317 1.04620 1.11708 1.73384 1.17492 0.89629 0.87212 0.94217 1.20914 1.01195 0.90630 1.04904 1.20353 0.92003 0.98205 0.98249 1.20345 0.93840 0.95380 1.06049 1.20082 0.95063 0.93151 0.98469 1.19917 0.91644 0.98533 1.09380 1.20994 0.92077 0.96816 1.01747 1.22263 0.97051 0.94801 1.01605 1.20941 0.92241 0.96932 1.00805 0.88442 0.76190 0.84149 0.86562 0.86838 0.91157 0.90657 0.91131 0.91249 0.91128 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.65 18.54 41.84 0.78 -11.88 16 2 C 0.32 7.40 14.07 -22.47 -0.32 7.08 16 3 C -0.30 -6.35 5.88 -104.94 -0.62 -6.96 16 4 C 0.31 6.81 14.82 -22.48 -0.33 6.47 16 5 N -0.53 -12.18 18.54 41.83 0.78 -11.40 16 6 C 0.34 6.88 4.43 -83.56 -0.37 6.51 16 7 C -0.36 -7.55 7.09 -38.32 -0.27 -7.83 16 8 H 0.12 2.76 7.51 -52.49 -0.39 2.37 16 9 C 0.08 1.62 5.35 -17.21 -0.09 1.52 16 10 N -0.73 -15.19 13.90 55.59 0.77 -14.42 16 11 Si 0.92 16.23 24.38 -169.99 -4.14 12.08 16 12 H -0.24 -4.10 5.43 56.52 0.31 -3.80 16 13 H -0.29 -5.13 7.11 56.52 0.40 -4.73 16 14 H -0.25 -4.40 6.58 56.52 0.37 -4.03 16 15 N -0.69 -12.57 2.23 -8.21 -0.02 -12.59 16 16 C 0.21 3.76 4.53 -83.79 -0.38 3.38 16 17 C -0.15 -2.74 8.84 -39.43 -0.35 -3.09 16 18 C -0.07 -1.09 10.03 -39.56 -0.40 -1.49 16 19 C -0.15 -2.26 6.15 -103.98 -0.64 -2.90 16 20 C -0.07 -0.99 6.13 -104.22 -0.64 -1.63 16 21 C -0.17 -2.76 8.63 -39.33 -0.34 -3.10 16 22 C -0.08 -0.90 6.77 -26.85 -0.18 -1.08 16 23 C -0.12 -1.17 7.07 -25.33 -0.18 -1.35 16 24 C -0.07 -0.81 6.80 -26.69 -0.18 -0.99 16 25 H 0.30 5.67 8.29 -40.82 -0.34 5.33 16 26 H 0.40 6.75 7.77 -40.82 -0.32 6.43 16 27 H 0.14 2.63 6.20 -52.49 -0.33 2.31 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -24.95 308.03 -6.16 -31.11 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.68 Total: 7.88 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -5.29 Total: -5.43 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 2.31 Total: -50.29 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -4.14 Total: 12.08 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -24.95 -6.16 -31.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.251 kcal (2) G-P(sol) polarization free energy of solvation -24.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds