Wall clock time and date at job start Fri Apr 10 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43205 * 119.99669 * 258.06647 * 3 2 1 5 5 N 3.51039 * 140.68849 * 258.06977 * 2 1 3 6 6 C 1.41156 * 119.99885 * 78.06215 * 3 2 1 7 7 C 1.39000 * 120.00165 * 354.89980 * 6 3 2 8 8 H 1.07999 * 119.99593 * 331.09977 * 7 6 3 9 9 C 1.40827 * 120.00038 * 151.11007 * 7 6 3 10 10 N 1.30336 * 120.00059 * 168.21007 * 9 7 6 11 11 Si 1.86803 * 120.00240 * 348.20163 * 9 7 6 12 12 H 1.48494 * 109.46987 * 89.18193 * 11 9 7 13 13 H 1.48497 * 109.47310 * 209.18630 * 11 9 7 14 14 H 1.48499 * 109.46891 * 329.18770 * 11 9 7 15 15 N 1.38300 * 120.00022 * 174.89415 * 6 3 2 16 16 C 1.39734 * 119.99942 * 120.18839 * 15 6 3 17 17 C 1.38938 * 120.11537 * 353.35719 * 16 15 6 18 18 C 1.37957 * 119.85731 * 180.02562 * 17 16 15 19 19 C 1.38575 * 120.31475 * 359.97438 * 18 17 16 20 20 C 1.38286 * 119.97387 * 0.02649 * 19 18 17 21 21 C 1.38369 * 119.92595 * 359.97438 * 20 19 18 22 22 C 1.51382 * 109.75167 * 180.02562 * 20 19 18 23 23 C 1.54337 * 105.17289 * 342.79636 * 22 20 19 24 24 C 1.51707 * 130.21403 * 179.85700 * 19 18 17 25 25 H 0.97006 * 120.00018 * 179.97438 * 10 9 7 26 26 H 0.97003 * 119.99908 * 300.19455 * 15 6 3 27 27 H 1.07997 * 120.06894 * 0.04600 * 17 16 15 28 28 H 1.07992 * 119.83885 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.92478 * 179.97438 * 21 20 19 30 30 H 1.08999 * 110.30040 * 223.87655 * 22 20 19 31 31 H 1.09000 * 110.38808 * 101.76703 * 22 20 19 32 32 H 1.09001 * 110.82198 * 144.60295 * 23 22 20 33 33 H 1.09002 * 110.82309 * 267.95503 * 23 22 20 34 34 H 1.09002 * 110.25363 * 78.28012 * 24 19 18 35 35 H 1.09001 * 110.49628 * 316.03055 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.2574 1.2134 5 7 3.8520 0.4597 2.1759 6 6 3.2738 -0.2519 -1.1960 7 6 2.5831 -0.6054 -2.3493 8 1 1.6421 -1.1302 -2.2756 9 6 3.1106 -0.2796 -3.6138 10 7 2.5937 -0.8024 -4.6899 11 14 4.5509 0.9023 -3.7487 12 1 5.8240 0.1420 -3.6699 13 1 4.4824 1.6200 -5.0469 14 1 4.4913 1.8843 -2.6364 15 7 4.6527 -0.1475 -1.2204 16 6 5.4314 -1.2567 -1.5609 17 6 4.8349 -2.4986 -1.7405 18 6 5.6089 -3.5902 -2.0760 19 6 6.9787 -3.4539 -2.2354 20 6 7.5755 -2.2193 -2.0573 21 6 6.8035 -1.1214 -1.7207 22 6 9.0674 -2.3344 -2.2869 23 6 9.3753 -3.8438 -2.1932 24 6 8.0306 -4.4867 -2.5937 25 1 2.9568 -0.5777 -5.5610 26 1 5.0792 0.6957 -1.0011 27 1 3.7676 -2.6090 -1.6180 28 1 5.1450 -4.5554 -2.2152 29 1 7.2697 -0.1573 -1.5812 30 1 9.6119 -1.7888 -1.5162 31 1 9.3299 -1.9554 -3.2747 32 1 10.1622 -4.1230 -2.8940 33 1 9.6492 -4.1209 -1.1752 34 1 8.0121 -4.6882 -3.6648 35 1 7.8691 -5.4068 -2.0320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:42 Heat of formation + Delta-G solvation = 65.162888 kcal Electronic energy + Delta-G solvation = -20543.153321 eV Core-core repulsion = 17504.817752 eV Total energy + Delta-G solvation = -3038.335569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20183 -39.37116 -37.34751 -36.60885 -36.03447 -34.99982 -32.76159 -31.36728 -29.09690 -28.86368 -27.60858 -23.64312 -23.32966 -21.67842 -21.54450 -20.33602 -19.07470 -18.39050 -17.76553 -17.25453 -16.32617 -16.16579 -15.69304 -14.89274 -14.75778 -14.61100 -14.48253 -14.32753 -14.09908 -13.94536 -13.60343 -13.52401 -13.46731 -13.30516 -13.00034 -12.87171 -12.80543 -12.51988 -12.25117 -12.15174 -11.91399 -11.79749 -11.55261 -11.40282 -10.75443 -9.81760 -9.52684 -9.33167 -8.26797 -7.19560 0.29461 0.59408 0.77879 1.27609 1.43061 1.49183 1.98540 2.00143 2.17658 2.21267 2.50838 2.67986 2.98914 3.33093 3.68366 3.71173 3.81081 4.19448 4.29355 4.32598 4.41463 4.51910 4.61427 4.70117 4.78994 4.88002 4.97531 5.05031 5.14103 5.17668 5.31729 5.42936 5.44359 5.52968 5.62399 5.66792 5.80224 5.87900 6.11515 6.16269 6.60392 6.76158 7.10836 7.27201 7.64269 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.006576 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.403425 B = 4256.882653 C = 4909.080061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.327 3.673 3 C -0.306 4.306 4 C 0.319 3.681 5 N -0.546 5.546 6 C 0.360 3.640 7 C -0.363 4.363 8 H 0.092 0.908 9 C 0.058 3.942 10 N -0.753 5.753 11 Si 0.958 3.042 12 H -0.228 1.228 13 H -0.286 1.286 14 H -0.248 1.248 15 N -0.692 5.692 16 C 0.194 3.806 17 C -0.177 4.177 18 C -0.079 4.079 19 C -0.157 4.157 20 C -0.074 4.074 21 C -0.178 4.178 22 C -0.080 4.080 23 C -0.113 4.113 24 C -0.073 4.073 25 H 0.315 0.685 26 H 0.408 0.592 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.661 -4.701 -6.320 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C 0.020 3.980 3 C -0.325 4.325 4 C 0.012 3.988 5 N -0.229 5.229 6 C 0.256 3.744 7 C -0.390 4.390 8 H 0.110 0.890 9 C -0.171 4.171 10 N -0.371 5.371 11 Si 0.780 3.220 12 H -0.151 1.151 13 H -0.213 1.213 14 H -0.172 1.172 15 N -0.321 5.321 16 C 0.096 3.904 17 C -0.199 4.199 18 C -0.098 4.098 19 C -0.159 4.159 20 C -0.075 4.075 21 C -0.200 4.200 22 C -0.116 4.116 23 C -0.151 4.151 24 C -0.110 4.110 25 H 0.127 0.873 26 H 0.246 0.754 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.590 -4.556 -5.125 17.031 hybrid contribution -0.237 0.745 -0.405 0.880 sum 15.353 -3.811 -5.530 16.758 Atomic orbital electron populations 1.81043 1.12936 1.19826 1.09762 1.24904 0.91619 0.90072 0.91413 1.12975 0.82458 1.47976 0.89078 1.25147 0.92084 0.90052 0.91533 1.81059 1.10358 1.20024 1.11457 1.16577 0.80901 0.87035 0.89886 1.19970 1.04899 1.24428 0.89744 0.88987 1.27233 0.99385 0.96496 0.94027 1.69384 1.35561 1.30633 1.01536 0.85527 0.79076 0.78854 0.78577 1.15136 1.21316 1.17187 1.42203 1.03610 1.12405 1.73890 1.17625 0.90370 0.86749 0.95637 1.20869 1.00476 0.91823 1.06699 1.20563 0.92900 0.98219 0.98126 1.20836 0.93834 0.96785 1.04413 1.20617 0.97182 0.92621 0.97082 1.20180 0.90965 0.99913 1.08938 1.21116 0.89444 0.98247 1.02842 1.22295 0.96760 0.93335 1.02678 1.21059 0.91832 0.96467 1.01666 0.87277 0.75359 0.86370 0.85310 0.85190 0.89969 0.89362 0.88586 0.90772 0.90029 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.26 18.54 19.00 0.35 -26.91 16 2 C 0.33 15.35 14.07 88.33 1.24 16.59 16 3 C -0.31 -13.29 5.88 -20.07 -0.12 -13.41 16 4 C 0.32 14.03 14.82 88.33 1.31 15.34 16 5 N -0.55 -24.87 18.54 19.00 0.35 -24.51 16 6 C 0.36 14.57 4.43 39.02 0.17 14.74 16 7 C -0.36 -15.62 7.09 23.09 0.16 -15.45 16 8 H 0.09 4.44 7.51 -2.91 -0.02 4.42 16 9 C 0.06 2.36 5.35 85.55 0.46 2.82 16 10 N -0.75 -31.40 13.90 21.98 0.31 -31.10 16 11 Si 0.96 31.98 24.38 68.60 1.67 33.66 16 12 H -0.23 -7.17 5.43 99.48 0.54 -6.63 16 13 H -0.29 -9.43 7.11 99.48 0.71 -8.72 16 14 H -0.25 -8.04 6.58 99.48 0.65 -7.39 16 15 N -0.69 -24.67 2.23 -179.87 -0.40 -25.07 16 16 C 0.19 6.67 4.53 38.18 0.17 6.85 16 17 C -0.18 -6.31 8.84 22.37 0.20 -6.11 16 18 C -0.08 -2.44 10.03 22.28 0.22 -2.21 16 19 C -0.16 -4.23 6.15 -19.45 -0.12 -4.35 16 20 C -0.07 -1.98 6.13 -19.60 -0.12 -2.10 16 21 C -0.18 -5.32 8.63 22.43 0.19 -5.12 16 22 C -0.08 -1.48 6.77 30.52 0.21 -1.27 16 23 C -0.11 -1.73 7.07 31.50 0.22 -1.50 16 24 C -0.07 -1.39 6.80 30.62 0.21 -1.18 16 25 H 0.31 11.60 8.29 -92.70 -0.77 10.84 16 26 H 0.41 13.20 7.77 -92.71 -0.72 12.48 16 27 H 0.12 4.65 6.20 -2.91 -0.02 4.63 16 28 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -53.27 308.03 6.90 -46.37 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.21 Total: 23.96 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 4.41 Total: 3.61 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: 0.61 Total: -107.60 kcal Atomic # 14 Polarization: 31.98 SS G_CDS: 1.67 Total: 33.66 kcal Total: -53.27 6.90 -46.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.534 kcal (2) G-P(sol) polarization free energy of solvation -53.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds