Wall clock time and date at job start Fri Apr 10 2020 13:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47202 * 270.00148 * 3 2 1 5 5 H 1.48501 * 109.47603 * 30.00349 * 3 2 1 6 6 H 1.48506 * 109.47086 * 149.99988 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.67877 * 324.99827 * 12 11 10 14 14 C 1.53325 * 109.68170 * 204.48137 * 12 11 10 15 15 C 1.52734 * 108.38433 * 170.41007 * 14 12 11 16 16 C 1.50623 * 110.59078 * 51.08957 * 15 14 12 17 17 C 1.39029 * 117.75925 * 162.29722 * 16 15 14 18 18 Cl 1.73605 * 119.73637 * 359.76763 * 17 16 15 19 19 C 1.38051 * 120.52370 * 179.74987 * 17 16 15 20 20 C 1.38249 * 119.75308 * 359.97438 * 19 17 16 21 21 C 1.37931 * 119.78489 * 0.11457 * 20 19 17 22 22 C 1.37646 * 122.57361 * 342.24508 * 16 15 14 23 23 C 1.50645 * 122.57047 * 0.66432 * 22 16 15 24 24 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 26 26 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 28 28 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 29 29 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 30 30 H 1.09005 * 109.67984 * 290.13429 * 14 12 11 31 31 H 1.09000 * 109.67966 * 50.64528 * 14 12 11 32 32 H 1.08997 * 109.25622 * 171.38169 * 15 14 12 33 33 H 1.09004 * 109.24684 * 290.80282 * 15 14 12 34 34 H 1.07996 * 120.12284 * 180.02562 * 19 17 16 35 35 H 1.07996 * 120.10087 * 180.13059 * 20 19 17 36 36 H 1.08005 * 119.71356 * 180.02562 * 21 20 19 37 37 H 1.08996 * 109.29820 * 221.98482 * 23 22 16 38 38 H 1.09005 * 109.21493 * 102.55399 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 1 3.3195 -5.8318 -0.5917 14 6 1.7391 -7.3038 -0.6019 15 6 2.7854 -8.3966 -0.8108 16 6 3.5772 -8.6200 0.4509 17 6 4.2962 -9.8047 0.5630 18 17 4.2515 -10.9645 -0.7280 19 6 5.0456 -10.0658 1.6926 20 6 5.0821 -9.1420 2.7205 21 6 4.3678 -7.9671 2.6114 22 6 3.6106 -7.7031 1.4770 23 6 2.8464 -6.4057 1.4304 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8726 -3.6048 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8740 -4.9838 -0.7836 30 1 0.9686 -7.6591 0.0824 31 1 1.2873 -7.0397 -1.5581 32 1 2.2857 -9.3240 -1.0905 33 1 3.4620 -8.0980 -1.6116 34 1 5.6020 -10.9880 1.7726 35 1 5.6682 -9.3396 3.6057 36 1 4.3974 -7.2460 3.4149 37 1 3.4746 -5.6036 1.8178 38 1 1.9534 -6.4929 2.0494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171024123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:48 Heat of formation + Delta-G solvation = -24.292505 kcal Electronic energy + Delta-G solvation = -18792.564972 eV Core-core repulsion = 15851.457820 eV Total energy + Delta-G solvation = -2941.107152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15585 -38.46553 -37.39063 -35.98180 -34.57357 -33.12993 -31.71528 -30.14340 -28.87309 -26.15771 -24.49647 -23.15134 -23.07204 -22.27734 -20.33459 -18.50957 -17.76574 -16.97247 -16.70499 -16.51166 -16.09873 -15.71198 -15.30250 -15.10256 -14.59954 -14.40448 -14.20275 -14.08104 -13.74496 -13.33175 -13.15713 -13.05238 -12.84154 -12.63274 -12.45827 -12.22401 -12.18974 -12.02700 -11.86826 -11.65536 -11.38017 -11.29092 -11.11603 -10.56023 -9.60327 -9.57009 -9.30377 -8.20056 -6.31426 0.18132 0.30612 1.16601 1.40644 1.42023 1.53202 2.40713 2.63166 3.13409 3.19058 3.59510 3.74237 3.92700 4.05163 4.08934 4.17521 4.35914 4.44636 4.51419 4.52517 4.60546 4.64504 4.73237 4.81558 4.93305 4.95730 5.00895 5.07422 5.17968 5.28435 5.32449 5.43758 5.47007 5.60926 5.68933 5.79717 5.88002 6.15516 6.29173 6.56108 6.86012 7.37858 8.92030 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.003090 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.620893 B = 9058.436568 C = 9497.340781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.690 5.690 12 C 0.087 3.913 13 H 0.037 0.963 14 C -0.112 4.112 15 C -0.076 4.076 16 C -0.082 4.082 17 C -0.048 4.048 18 Cl -0.071 7.071 19 C -0.118 4.118 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.070 4.070 23 C -0.066 4.066 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.005 1.005 27 H 0.057 0.943 28 H 0.016 0.984 29 H 0.342 0.658 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -22.777 2.247 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.043 4.043 11 N -0.322 5.322 12 C -0.022 4.022 13 H 0.055 0.945 14 C -0.150 4.150 15 C -0.113 4.113 16 C -0.082 4.082 17 C -0.075 4.075 18 Cl -0.042 7.042 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.071 4.071 23 C -0.103 4.103 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.014 0.986 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.161 0.839 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.747 -22.780 2.808 24.936 hybrid contribution 0.369 1.031 -1.042 1.512 sum 10.115 -21.749 1.765 24.051 Atomic orbital electron populations 1.70110 1.07789 1.27790 1.51436 1.25966 0.95769 1.03335 0.94646 0.85435 0.78663 0.78374 0.78499 1.19756 1.20697 1.18725 1.21618 0.93499 0.92330 1.50892 0.92262 1.18914 0.94288 0.92208 0.95115 1.21801 0.95524 0.88459 0.98534 1.60484 1.19993 1.01413 1.50281 1.21496 0.94171 0.90598 0.95959 0.94525 1.21686 0.97876 0.93808 1.01622 1.20491 0.96853 0.99890 0.94091 1.19604 0.98660 0.92832 0.97143 1.21100 1.02508 0.92018 0.91845 1.98350 1.97493 1.58421 1.49908 1.21260 0.98992 1.01278 0.92137 1.21340 0.99011 0.92883 0.99295 1.21537 0.96522 0.98417 0.97577 1.19688 0.97939 0.95486 0.93969 1.20402 0.99451 0.93163 0.97297 0.92738 0.99009 0.98615 0.92447 0.96596 0.83923 0.90835 0.90305 0.89142 0.90143 0.83156 0.82330 0.84285 0.91329 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.72 5.23 29.85 0.16 1.88 16 10 C 0.09 3.61 5.43 86.30 0.47 4.08 16 11 N -0.69 -24.01 6.32 -491.46 -3.10 -27.12 16 12 C 0.09 2.45 2.51 44.94 0.11 2.57 16 13 H 0.04 1.09 7.77 -2.39 -0.02 1.07 16 14 C -0.11 -2.55 5.37 30.61 0.16 -2.39 16 15 C -0.08 -1.57 5.00 29.74 0.15 -1.42 16 16 C -0.08 -1.82 5.74 -19.84 -0.11 -1.94 16 17 C -0.05 -0.97 6.31 22.42 0.14 -0.83 16 18 Cl -0.07 -1.30 27.26 -2.72 -0.07 -1.38 16 19 C -0.12 -2.00 9.82 22.23 0.22 -1.78 16 20 C -0.11 -1.70 10.05 22.20 0.22 -1.48 16 21 C -0.12 -2.38 9.61 22.36 0.21 -2.17 16 22 C -0.07 -1.62 5.74 -19.86 -0.11 -1.74 16 23 C -0.07 -1.73 5.14 29.74 0.15 -1.58 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.06 2.41 7.67 -2.39 -0.02 2.39 16 28 H 0.02 0.66 8.06 -2.39 -0.02 0.64 16 29 H 0.34 11.47 8.25 -89.69 -0.74 10.73 16 30 H 0.07 1.69 8.10 -2.38 -0.02 1.67 16 31 H 0.08 1.66 7.94 -2.39 -0.02 1.64 16 32 H 0.09 1.69 7.23 -2.39 -0.02 1.67 16 33 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.14 2.32 8.05 -2.91 -0.02 2.30 16 37 H 0.07 1.90 7.71 -2.39 -0.02 1.88 16 38 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -64.13 323.75 1.91 -62.22 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.31 Total: 13.96 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 2.47 Total: -37.32 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.82 Total: -83.85 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.38 kcal Total: -64.13 1.91 -62.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171024123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.927 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds