Wall clock time and date at job start Fri Apr 10 2020 13:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.67574 * 34.48076 * 12 11 10 14 14 C 1.53332 * 109.67972 * 155.00177 * 12 11 10 15 15 C 1.52731 * 108.38057 * 189.62511 * 14 12 11 16 16 C 1.50627 * 110.60004 * 308.98109 * 15 14 12 17 17 C 1.39031 * 117.75703 * 197.49171 * 16 15 14 18 18 Cl 1.73606 * 119.73699 * 0.19566 * 17 16 15 19 19 C 1.38045 * 120.52063 * 180.23603 * 17 16 15 20 20 C 1.38243 * 119.75878 * 0.02562 * 19 17 16 21 21 C 1.37937 * 119.78467 * 359.90012 * 20 19 17 22 22 C 1.37648 * 122.57584 * 17.55658 * 16 15 14 23 23 C 1.50635 * 122.56546 * 359.51743 * 22 16 15 24 24 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 30 30 H 1.09001 * 109.68551 * 309.34548 * 14 12 11 31 31 H 1.08996 * 109.68484 * 69.86781 * 14 12 11 32 32 H 1.09004 * 109.25595 * 69.26923 * 15 14 12 33 33 H 1.08995 * 109.25261 * 188.73251 * 15 14 12 34 34 H 1.08006 * 120.11983 * 180.02562 * 19 17 16 35 35 H 1.08001 * 120.10734 * 179.87527 * 20 19 17 36 36 H 1.08002 * 119.71305 * 180.02562 * 21 20 19 37 37 H 1.08993 * 109.26632 * 257.38839 * 23 22 16 38 38 H 1.08999 * 109.24605 * 137.95007 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4906 -2.6364 0.0022 12 6 6.0171 -4.0079 0.0040 13 1 5.3588 -4.6544 -0.5762 14 6 7.4238 -4.0218 -0.6062 15 6 7.8450 -5.4753 -0.8123 16 6 7.6510 -6.2679 0.4538 17 6 8.3143 -7.4848 0.5640 18 17 9.3270 -8.0342 -0.7347 19 6 8.1733 -8.2600 1.6974 20 6 7.3659 -7.8235 2.7312 21 6 6.7085 -6.6156 2.6240 22 6 6.8507 -5.8324 1.4855 23 6 6.1099 -4.5215 1.4393 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1497 0.8925 29 1 5.8523 -2.1109 -0.7795 30 1 7.4133 -3.5032 -1.5649 31 1 8.1222 -3.5290 0.0701 32 1 7.2426 -5.9149 -1.6073 33 1 8.8963 -5.5077 -1.0983 34 1 8.6919 -9.2042 1.7763 35 1 7.2500 -8.4264 3.6197 36 1 6.0783 -6.2755 3.4325 37 1 6.6373 -3.7887 2.0500 38 1 5.1047 -4.6627 1.8363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171024125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:51 Heat of formation + Delta-G solvation = -4.873230 kcal Electronic energy + Delta-G solvation = -18835.923870 eV Core-core repulsion = 15895.658801 eV Total energy + Delta-G solvation = -2940.265069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31741 -37.42203 -36.58829 -34.57318 -32.79054 -32.16760 -30.56020 -29.21207 -27.80563 -24.48194 -23.34325 -22.34628 -21.95476 -20.40309 -19.34824 -16.96251 -16.77475 -16.02612 -15.79057 -15.18467 -14.67690 -14.29494 -14.21986 -13.87530 -13.57588 -13.25758 -13.09521 -12.89057 -12.47384 -12.37273 -12.19045 -11.86484 -11.47293 -11.39472 -11.27816 -11.10109 -11.00438 -10.77420 -10.40925 -10.06528 -9.85344 -9.68176 -9.22844 -8.81852 -8.77330 -8.53927 -7.98666 -6.04625 -4.03123 0.95706 1.08342 1.93475 3.31917 3.39573 3.40461 3.45304 4.27494 4.42087 4.46093 4.63532 4.76831 4.88564 4.98419 5.05049 5.11676 5.29932 5.35398 5.45689 5.46038 5.55028 5.65839 5.81505 5.83140 5.92150 6.02034 6.10918 6.15347 6.17906 6.23222 6.36750 6.44459 6.64449 6.77132 7.13441 7.37006 7.60128 7.74548 7.89684 8.52853 8.99458 9.57741 11.08733 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033971 B = 0.003215 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.037454 B = 8707.308755 C = 9143.690188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.690 5.690 12 C 0.087 3.913 13 H 0.046 0.954 14 C -0.120 4.120 15 C -0.081 4.081 16 C -0.068 4.068 17 C -0.037 4.037 18 Cl -0.075 7.075 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.054 4.054 23 C -0.072 4.072 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.009 0.991 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.338 0.662 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.578 -15.739 1.999 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.322 5.322 12 C -0.023 4.023 13 H 0.064 0.936 14 C -0.157 4.157 15 C -0.118 4.118 16 C -0.069 4.069 17 C -0.063 4.063 18 Cl -0.046 7.046 19 C -0.137 4.137 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.055 4.055 23 C -0.109 4.109 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.027 0.973 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.549 -15.593 2.561 25.136 hybrid contribution 0.171 0.430 -0.982 1.086 sum 19.720 -15.163 1.579 24.925 Atomic orbital electron populations 1.69916 1.06339 1.26927 1.51132 1.25014 0.94731 0.99228 0.94477 0.86745 0.80496 0.83423 0.78454 1.20408 1.21447 1.18734 1.21074 0.89422 0.94497 1.51015 0.91153 1.19545 0.96640 0.91865 0.96714 1.22006 0.84013 0.99990 0.99457 1.60572 1.09958 1.11815 1.49808 1.21442 0.94728 0.90976 0.95193 0.93628 1.21755 0.97045 0.95551 1.01388 1.20525 1.02459 0.94707 0.94152 1.19497 0.96865 0.93610 0.96917 1.20966 0.98282 0.96081 0.90987 1.98352 1.67539 1.89281 1.49462 1.20929 1.00223 0.99954 0.92612 1.21010 0.96916 0.96539 0.98506 1.21328 0.99712 0.94464 0.97796 1.19737 0.96126 0.96770 0.92820 1.20523 1.00023 0.92252 0.98126 0.92727 0.95659 0.97308 0.95998 0.91755 0.84394 0.91133 0.90781 0.90212 0.90094 0.85213 0.85192 0.85297 0.89226 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.23 4.30 -27.89 -0.12 -0.35 16 10 C 0.07 1.45 5.43 -3.83 -0.02 1.43 16 11 N -0.69 -11.07 6.32 -106.69 -0.67 -11.74 16 12 C 0.09 1.16 2.51 -67.67 -0.17 0.99 16 13 H 0.05 0.66 7.76 -51.93 -0.40 0.25 16 14 C -0.12 -1.32 5.36 -26.70 -0.14 -1.46 16 15 C -0.08 -0.85 5.00 -28.06 -0.14 -0.99 16 16 C -0.07 -0.78 5.74 -104.58 -0.60 -1.38 16 17 C -0.04 -0.39 6.31 -39.36 -0.25 -0.64 16 18 Cl -0.08 -0.74 27.27 -51.86 -1.41 -2.15 16 19 C -0.12 -1.13 9.82 -39.65 -0.39 -1.52 16 20 C -0.11 -1.01 10.05 -39.69 -0.40 -1.41 16 21 C -0.11 -1.18 9.61 -39.44 -0.38 -1.56 16 22 C -0.05 -0.62 5.74 -104.62 -0.60 -1.22 16 23 C -0.07 -0.91 5.15 -28.05 -0.14 -1.05 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 26 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 27 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 28 H 0.06 1.29 7.71 -51.93 -0.40 0.89 16 29 H 0.34 5.09 8.24 -39.29 -0.32 4.77 16 30 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 31 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.78 7.24 -51.93 -0.38 0.40 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 1.14 8.05 -52.49 -0.42 0.71 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -30.45 320.22 -10.57 -41.02 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.62 Total: 0.65 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.78 Total: -22.53 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.10 Total: -38.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.41 Total: -2.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.45 -10.57 -41.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171024125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.146 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds